Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g01041 ATGGCGGTCATTAGAACCACCACAAACATGATCCTCAGAGAAATCCTTCATTCGCAACCCTATTTTACTCTATCAGTACCCCCACTCTTCCCTGCTACTTTGAACAATCCCAATGCCGCTTTGCGATTCAGGCTGCGTGAGATCAGTTTTGGTCGTGTCATATGTGCCGCTTCGGAGTCGTCCGGTGCCGGAGGAAAGGTATCTTCCCGCCTGTCGCAGGTTCAGCAGCTGTTGCAAGAGGCGGAGGAGCGCGCTCTATCGGCTGACGACGAACCCGCCCCTAAAATCACTCTCGATCACGTCACTGTGAATTTTGCAAGAAGTGGTGGCCCTGGAGGTCAGAATGTCAATAAAGTGAACACGAAGGTTGACATGCGCTTCAATGTTAAAGATGCATATTGGCTAAGCGAGAGAATCAGGGAAAAGATTATGCAAACGGAGAAAAATCGGATCAACAAGGATGGGGAGCTTGTAATTTCATCCACTAAAACTAGAACGCAGAAGGGGAACATTGAAGATGCCTTGGAGAAACTTCAGGCAATAATTGATGCTGCTTCTTATGTCCCGCCACCTCCCTCAGAAGAACAAAAGAAGAAAATTGCTAAGATGGCTGCCATTGGAGAACAGAAACGCCTTAAAAGCAAGAAGGTCCTTTCTGACAAGAAGGCGTTTCGAAGGAGTCGAGGCAGTTGGGATTAA 699 47.78 MAVIRTTTNMILREILHSQPYFTLSVPPLFPATLNNPNAALRFRLREISFGRVICAASESSGAGGKVSSRLSQVQQLLQEAEERALSADDEPAPKITLDHVTVNFARSGGPGGQNVNKVNTKVDMRFNVKDAYWLSERIREKIMQTEKNRINKDGELVISSTKTRTQKGNIEDALEKLQAIIDAASYVPPPPSEEQKKKIAKMAAIGEQKRLKSKKVLSDKKAFRRSRGSWD 232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 8001842 8007924 + CmaCh16G010410.1 Cma16g01041 311639

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g01041 232 Coils Coil 71 91 - -
Cma16g01041 232 ProSitePatterns Prokaryotic-type class I peptide chain release factors signature. 107 123 IPR000352 GO:0003747|GO:0006415
Cma16g01041 232 PANTHER CLASS I PEPTIDE CHAIN RELEASE FACTOR 1 232 - -
Cma16g01041 232 SUPERFAMILY Peptidyl-tRNA hydrolase domain-like 93 186 - -
Cma16g01041 232 Pfam RF-1 domain 95 222 IPR000352 GO:0003747|GO:0006415
Cma16g01041 232 MobiDBLite consensus disorder prediction 213 232 - -
Cma16g01041 232 Gene3D - 91 230 - -
Cma16g01041 232 PANTHER CLASS I PEPTIDE CHAIN RELEASE FACTOR 1 232 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g01041 K15033 ICT1, MRPL58; peptidyl-tRNA hydrolase ICT1 [EC:3.1.1.29] - csv:101203339 403.29
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g480 . . . . . Bpe07g00148 . . . Cmo16g01089 . . . . . Cpe14g00861 . . . . . . . . Cla10g00299 Cam10g0312 Cec10g0322 Cco10g0315 Clacu10g0309 Cmu10g1148 Cre10g0558 . . Cone6ag0712 Cone9ag0713 Lsi07g01344 . . Cme06g02631 . . . . . . . Bma12g00141 . . . . Cma16g01041 . Car16g00992 . . . . . . . . . . . . . . . . . Csa03g00319 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011191 1 0 0 5 1 0 1 1 1 1 0 0 1 1 1 1 0 2 1 0 1 1 1 1 1 1 1 3 2 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g01041 Cma_Chr16 FPKM 7.178785 9.014683 9.078128 10.110371 32.103607 31.41556 29.316086 9.176937 9.439183 9.292341