Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g01045 ATGTTGAGGCCATTGCCAGTTTCTGAAGCAGAGAGATTGCGAAGCTCCTCCATAGTCGTCTTCTACAATGGGTCAAAAGGTATTTCAGCTTCAGCATTGCCGTACAAGAGGACTCCACCGAGTTGGCTCAAGATTTCTACTCAAGATGTTGAAGAAAACATCTGCAAATTCGCGAAGAAGGGTTTGACGCCGTCTCAGATCGGTGTAATTCTTCGTGATTCTCATGGTATTGCTCAGGTCAAGAGCGTTACTGGAAACAAGATCTTGCGAATTCTTAAAGCTCATGGGCTTGCTCCGGAGATTCCTGAGGATCTGTACCATTTGATTAAGAAGGCCGTCTCGATTAGAAAGCATTTGGAAAGGAACAGGAAGGATAAGGACTCGAAGTTCAGGTTGATTCTTGTGGAGAGTAGGATTCATCGGCTAGCTCGCTATTACAAGAAGACCAAGAAGCTCCCACCTGTCTGGAAATATTCTAAGCAGAGTGCTCCTTGGTTTACCTCATGGTTAGGAGTGTGCTTTGAGGTTGTCACAGAGGAGGTTCTGTTCTGTTCTGTTCTTAATAAGATTGTTCCTGAGGCCCTCCCCCGCCTCACCTTCCGAGATTCCCGCCGTCAAGCGCCGACCAGGCAATTCTCCTGCTACTCACTCTTGTGTACTTTAGCGTTCATTAGATTTCGGAATTTATCGTACCAATTCCGTAAGGAAACTGAATTAATTAGACGTTTTCATTCCGGAACGAATCTGAAATCAAATTCTCCGGATTCTTCCTGCTCTGCCGTTGCGATTTTCTGGGATTTGGACAATAAACCACCGAAATCGTTACCGCCTTACGAAGCTGCGGTTAAGCTCAAGGCTGCAGCGGCTTCCTTTGGCGCCGTTCGGTACATGGTGGCTTATGCGAATCGGCATGCGTTCAGCTATGTGCCGCAAGTTGTTAGAGAGAAGAGGAGAGAGAGGAAGATGCTTAATCAATTGGAGAGGAAAGGTGTGATTAAATCGATTGAGCCGTATCTGTGTCGTGTTTGTGGGAGAAATTTCTATACGAATGAGAAGTTAGTGAATCATTTTAAGCAAATTCATGAGAGTGAGCATAAGAAGAGGTTGAATCAGATCGAATCTGCCAAGGGGAGTAGAAGAGTGAAGTTGCTCGCTAAGTATTCGATGAAAATACAGAAGTATAAGAATGCTGCTAGGGATGTTTTGACTCCGAAAGAGGGATATGGTCTAGCAGATGAGTTGAAGAGGGCAGGGTTTTTTGTGAAGACTGTGTCGGATAAGCCTGAAGCTGCGGATGTAGAATTGAGAAACGACATGGTTGAGGTCATGGATAGGAGAAGAGCAGAGTGTTTGGTTCTTGTATCAGATGATTCTGATTTTGTGAATGTTTTGAAGGAGGCCAAGTTGAGATGTCTTAGAACAGTTGTTGTTGGGGATCTTAATGATGGGCCATTGAAGAGAAATGCTGATACTGGGTTTTCTTGGAAGGAGATTTTAATGGGGAAGGCTAAGAAGGAGGCTGTGTCTGTTGTGGGAAAATGGAAGGATCGGGACGTTTTGAAGAGATTGGAATGGACATACAATCCTCAATTGGAGAAGGAAGTGTTTGGTTTGGATGATGATATGGGCGAGGATGAAGATGTTGAACAAGGTTCAGTTGATGAGAATATGACAAATGGTGACAGTGGTGCTTGGTGGGATCTCAACTCTGATGCTGAAACTGAAGCTGTGTCGTCACGATCATGTAAATGA 1752 44.58 MLRPLPVSEAERLRSSSIVVFYNGSKGISASALPYKRTPPSWLKISTQDVEENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYSKQSAPWFTSWLGVCFEVVTEEVLFCSVLNKIVPEALPRLTFRDSRRQAPTRQFSCYSLLCTLAFIRFRNLSYQFRKETELIRRFHSGTNLKSNSPDSSCSAVAIFWDLDNKPPKSLPPYEAAVKLKAAAASFGAVRYMVAYANRHAFSYVPQVVREKRRERKMLNQLERKGVIKSIEPYLCRVCGRNFYTNEKLVNHFKQIHESEHKKRLNQIESAKGSRRVKLLAKYSMKIQKYKNAARDVLTPKEGYGLADELKRAGFFVKTVSDKPEAADVELRNDMVEVMDRRRAECLVLVSDDSDFVNVLKEAKLRCLRTVVVGDLNDGPLKRNADTGFSWKEILMGKAKKEAVSVVGKWKDRDVLKRLEWTYNPQLEKEVFGLDDDMGEDEDVEQGSVDENMTNGDSGAWWDLNSDAETEAVSSRSCK 583
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 8025295 8031049 + CmaCh16G010450.1 Cma16g01045 311643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g01045 583 Hamap 30S ribosomal protein S15 [rpsO]. 20 166 IPR023029 -
Cma16g01045 583 SMART Ribosomal_S13_N_2 21 77 IPR012606 GO:0003735|GO:0005840|GO:0006412
Cma16g01045 583 Gene3D - 100 166 - -
Cma16g01045 583 Pfam NYN domain 409 490 IPR021139 GO:0004540
Cma16g01045 583 SMART Ribosomal_S15_2 87 166 IPR000589 GO:0003735|GO:0005840|GO:0006412
Cma16g01045 583 PANTHER - 234 576 - -
Cma16g01045 583 SUPERFAMILY S15/NS1 RNA-binding domain 83 160 IPR009068 -
Cma16g01045 583 SUPERFAMILY beta-beta-alpha zinc fingers 337 363 IPR036236 -
Cma16g01045 583 PANTHER ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN 234 576 - -
Cma16g01045 583 CDD Ribosomal_S15p_S13e 87 160 IPR000589 GO:0003735|GO:0005840|GO:0006412
Cma16g01045 583 Gene3D - 52 99 - -
Cma16g01045 583 Gene3D - 255 498 - -
Cma16g01045 583 ProSiteProfiles Zinc finger C2H2 type domain profile. 338 366 IPR013087 -
Cma16g01045 583 CDD PIN_LabA-like 348 479 - -
Cma16g01045 583 Pfam Ribosomal S13/S15 N-terminal domain 23 77 IPR012606 GO:0003735|GO:0005840|GO:0006412
Cma16g01045 583 ProSitePatterns Zinc finger C2H2 type domain signature. 340 361 IPR013087 -
Cma16g01045 583 MobiDBLite consensus disorder prediction 541 583 - -
Cma16g01045 583 Pfam Ribosomal protein S15 91 158 IPR000589 GO:0003735|GO:0005840|GO:0006412
Cma16g01045 583 ProSitePatterns Ribosomal protein S15 signature. 115 145 IPR000589 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g01045 Cma-Chr16:8025295 Cma17g00035 Cma-Chr17:152618 7.00E-89 dispersed
Cma09g00247 Cma-Chr9:1040916 Cma16g01045 Cma-Chr16:8025295 9.77E-69 transposed
Cma15g01163 Cma-Chr15:7373468 Cma16g01045 Cma-Chr16:8025295 3.48E-88 wgd
Cma16g01045 Cma-Chr16:8025295 Cma02g01499 Cma-Chr2:8566856 1.14E-87 wgd
Cma16g01045 Cma-Chr16:8025295 Cma06g00757 Cma-Chr6:3844519 2.78E-89 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36591 PF01936 NYN 2.80E-09 CL0280 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g01045 - - cmax:111465052 730.324