Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g01058 ATGGACATGACATCAAATCATGCATCTCCTGTTCTCACTGAACCTGCACCTATGAATAAATCAAGGCTAGGAATCCATTCTGCTATTTTGCCTTACTCTCAACCAGGTGCTTCCTTTCCCCCAAGTAAATATATCCCAATTCCTAGGAAGAAGTCTGGAAAATTTGATGATGTGTGGTCCAATGGTTGGTTGGATGCCATGAAATCCTCTTCTCCTCCTCGAAAGAAAATAAAGGATTTTGATGCCGAGTTCGCTTCAGATGATGATACTGATGTTGCTTACAGCTCATGGGTGCTGAAGCACCCTTCAGCACTCGGCTCTCTAGAGCAAATAACCAGTTACGCAAGAAATAAGAAAATAGCTGTTTTTTTGGACTATGATGGGACCCTTTCTCCTATAGTAGATGATCCAGATTGTGCTCTTATGTCTAATACTATGCGTTTTGCTGTAAGAAATGTTGCCAAATATTTTCCAACGGCAATCATTAGTGGAAGAAAGCGAGAAAAGGTTTTTGACTTGGTAGGACTAACAGAACTCTATTATGCTGGTAGTCATGGGATGGACATTGTCGGGCCTGTGAGTCAAACAGTGCTGAATTCCCATCCCAACTGTACTAGATCTACTGACCACCAGGGTAAGGATGTTAATCTGTTCCAGCCCGCAAGGGAATTCTTGCCCATGATAGACGAGGTTTTTGGAACCCTCGTCGAGAAGACGAAGGATATTAGAGGCGCAAAAGTTGAAAACCACAAGTTTTGTGCCGCTGTACATTACCGCAATGTACATGAGAAGAATTGGCCTACAATAGCACAGTGTGTTCATGATGTACTAAAAGACCACCCACGTTTACGATTAACACATGGGCGGAAGGTTTTAGAGATCCGTCCGGTGTTCGATTGGAACAAGGGAAAAGCTGTTGAATTTCTGCTCGAATCTCTCGGATTAAACGCAAGTGAAGACGTGCTCCCTATCTATATTGGTGATGACAGAACTGATGAAGATGCTTTTAAGGTGCTGCGGGAGAGAAACCAAGGCTACGGCATCTTGGTGTCTTCTGTGCCTAAAGAGACCAATGCATTCTACTCTCTTAGGGATCCCCCAGAGGTAATGGAATTCCTGATGGGATTGGTGGGAAGCAGGAAGGTGGAGAAAAATACTTGA 1161 43.67 MDMTSNHASPVLTEPAPMNKSRLGIHSAILPYSQPGASFPPSKYIPIPRKKSGKFDDVWSNGWLDAMKSSSPPRKKIKDFDAEFASDDDTDVAYSSWVLKHPSALGSLEQITSYARNKKIAVFLDYDGTLSPIVDDPDCALMSNTMRFAVRNVAKYFPTAIISGRKREKVFDLVGLTELYYAGSHGMDIVGPVSQTVLNSHPNCTRSTDHQGKDVNLFQPAREFLPMIDEVFGTLVEKTKDIRGAKVENHKFCAAVHYRNVHEKNWPTIAQCVHDVLKDHPRLRLTHGRKVLEIRPVFDWNKGKAVEFLLESLGLNASEDVLPIYIGDDRTDEDAFKVLRERNQGYGILVSSVPKETNAFYSLRDPPEVMEFLMGLVGSRKVEKNT 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 8103258 8105523 - CmaCh16G010580.1 Cma16g01058 311656

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g01058 386 CDD HAD_TPP 121 371 - -
Cma16g01058 386 Pfam Trehalose-phosphatase 123 366 IPR003337 GO:0003824|GO:0005992
Cma16g01058 386 TIGRFAM T6PP: trehalose-phosphatase 118 377 IPR003337 GO:0003824|GO:0005992
Cma16g01058 386 SUPERFAMILY HAD-like 121 374 IPR036412 -
Cma16g01058 386 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 385 IPR044651 GO:0004805|GO:0005992
Cma16g01058 386 Gene3D - 120 210 IPR023214 -
Cma16g01058 386 Gene3D - 232 386 IPR023214 -
Cma16g01058 386 PANTHER TREHALOSE-PHOSPHATE PHOSPHATASE F-RELATED 1 385 - -
Cma16g01058 386 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 122 341 IPR006379 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g01058 K01087 otsB; trehalose 6-phosphate phosphatase [EC:3.1.3.12] - csv:101220548 700.664
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g00764 Cma16g01058 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00337 Cma-Chr4:1648361 Cma16g01058 Cma-Chr16:8103258 1.78E-164 dispersed
Cma16g00191 Cma-Chr16:843023 Cma16g01058 Cma-Chr16:8103258 1.53E-174 dispersed
Cma16g00689 Cma-Chr16:3588515 Cma16g01058 Cma-Chr16:8103258 1.72E-127 dispersed
Cma16g01058 Cma-Chr16:8103258 Cma03g01336 Cma-Chr3:8580070 1.79E-08 dispersed
Cma16g01058 Cma-Chr16:8103258 Cma06g00764 Cma-Chr6:3878314 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g499 . Blo03g00173 Bda06g01308 . . Bpe07g00160 . . Cmo06g00785 Cmo16g01108 . . . . . Cpe14g00877 . . . . . . . . Cla10g00284 Cam10g0295 Cec10g0302 Cco10g0298 Clacu10g0294 Cmu10g1133 Cre10g0541 . . . . Lsi07g01330 . . Cme06g02612 . . . . . . Bma05g00775 . . . . Cma06g00764 Cma16g01058 Car06g00683 Car16g01007 Cpe08g00753 . . . . . . . . . . . . . . . . Csa03g00303 Chy06g02019 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000914 2 2 2 3 3 3 4 3 3 2 3 3 4 2 2 4 3 5 4 3 2 2 2 2 2 3 2 6 3 2 86
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g01058 Cma_Chr16 FPKM 2.170073 2.686309 1.965706 1.141038 6.240536 5.178659 4.713196 0.833965 0.262468 0.837709