Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g01059 ATGCCGAATTCCCAATCCCAACCTGCTTCCCGCTATGTCGCGGTAATAGGCGCCGGCGCCGGTGGCATTGTCGTTGCCCGTGAGCTCAGCCGCGAGGGCCACCGTGTGGTCGTCTTCGAACGGAACAGTCAAATTGGAGGGACCTGGGTGTATTCTCCGGAAATTGAATCCGATCCACTTGGAGTCAACCCTGATCGGACCCGAATCCATAGCAGCCTTTACAAATCTCTACGCACCAATCTCCCCAGAGAACTTATGGGCGTTCGGGATTACCCGTTTTTGCCACGAGAAGGGGGAGATCGAGATCCGAGGCGATTTCCAGGTCATCGAGAGGTTTTGAAGTATTTGGAAGATTTCGCGAATGAATTTGGGATCTGTGAATTGGTGAGATTTGGAACTGAGGTGGTTTTTGTTGGTCTGGAGCTTGGAAAATGGAGGATTCGATTTCGATGTGAAAATGGGGCTGTTCATGAAGAAACTTTTGATGCTGTAGTTGTTTGTGTTGGGAATTTTACGCAGCCTCGAGTGGCAGAGATTCCTGGTATCGATGAATGGCCTGGTGAACAGATACATAGTCATAATTATCGCAGTCCCGAACCATTTCGGGGTAAGGTTGTTGTCGTGATAGGTTATTCTTCAAGTGGTACGGACATTTCTCAGGAGCTCATTGGGGTTGCCAAAGAAATTCATATTGCTTGTAAATCAGCTAAAACAGAGCTTTTGGACACACAATCAAGTATTAATAGCGTGTCATTGCATCCAATGATCGAAAGTGTCCATAAAGATGGGAGAGTGGTCTTTCAAGATGGGTGCATCGTTTCGGTGGATGTGATTCTGCACTGCACTGGGTACAAGTATGATTACCCTTTTCTTGAAACCAATGGCATTGTTACTGTGAACGAGAACCGTGTAGGACCTCTATACAAGCATGTCTTCCCCCCAGCGTTGGCCCCGGGGCTTTCCTTTGTTGGGTTACCATTTAAGGCTGTTCCATTGCCCTTGTTTGAGCTTCAAGGCAATTGGGTTGCTGGTGTTTTATCAAACAGGATTGCACTTCCATCAAAAGAGGAGATGTTGGCCGATGTTAGAGCTTTCTACGCAGCTCTAGAAGCTTCTGGCAAGCCCAAGCATCTGACCCACGAATTGGGTGATTCTTCGCCTGCCTACATGAACTGGCTTGCAGCAACTTGTGGTCGTCCTGCCTATGAAGAATGGAGAAGAGAAATGTACATTGCTACTAACATTAATAGACTGGCCAATCTCGAGTCCTTCCGTGATGTTTGGCACGACGATGAGTTGAGTCGTCAAGCTTATGAGGAATTTAGTAAGTTTACTACAAATGAAAGAAGTCAAAACAACTCACATATGAATATTTGA 1377 46.62 MPNSQSQPASRYVAVIGAGAGGIVVARELSREGHRVVVFERNSQIGGTWVYSPEIESDPLGVNPDRTRIHSSLYKSLRTNLPRELMGVRDYPFLPREGGDRDPRRFPGHREVLKYLEDFANEFGICELVRFGTEVVFVGLELGKWRIRFRCENGAVHEETFDAVVVCVGNFTQPRVAEIPGIDEWPGEQIHSHNYRSPEPFRGKVVVVIGYSSSGTDISQELIGVAKEIHIACKSAKTELLDTQSSINSVSLHPMIESVHKDGRVVFQDGCIVSVDVILHCTGYKYDYPFLETNGIVTVNENRVGPLYKHVFPPALAPGLSFVGLPFKAVPLPLFELQGNWVAGVLSNRIALPSKEEMLADVRAFYAALEASGKPKHLTHELGDSSPAYMNWLAATCGRPAYEEWRREMYIATNINRLANLESFRDVWHDDELSRQAYEEFSKFTTNERSQNNSHMNI 458
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 8113473 8117754 - CmaCh16G010590.1 Cma16g01059 311657

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g01059 458 Gene3D - 178 281 IPR036188 -
Cma16g01059 458 PANTHER FLAVIN-CONTAINING MONOOXYGENASE 7 445 - -
Cma16g01059 458 SUPERFAMILY FAD/NAD(P)-binding domain 13 231 IPR036188 -
Cma16g01059 458 Gene3D - 13 427 IPR036188 -
Cma16g01059 458 PANTHER DIMETHYLANILINE MONOOXYGENASE 7 445 - -
Cma16g01059 458 SUPERFAMILY FAD/NAD(P)-binding domain 256 430 IPR036188 -
Cma16g01059 458 Pfam Flavin-binding monooxygenase-like 249 364 IPR020946 GO:0004499|GO:0050660|GO:0050661
Cma16g01059 458 Pfam Flavin-binding monooxygenase-like 12 235 IPR020946 GO:0004499|GO:0050660|GO:0050661
Cma16g01059 458 PRINTS Flavin-containing monooxygenase (FMO) signature 11 27 IPR000960 GO:0050660|GO:0050661
Cma16g01059 458 PRINTS Flavin-containing monooxygenase (FMO) signature 35 59 IPR000960 GO:0050660|GO:0050661
Cma16g01059 458 PRINTS Flavin-containing monooxygenase (FMO) signature 190 204 IPR000960 GO:0050660|GO:0050661
Cma16g01059 458 PRINTS Flavin-containing monooxygenase (FMO) signature 217 232 IPR000960 GO:0050660|GO:0050661
Cma16g01059 458 PRINTS Flavin-containing monooxygenase (FMO) signature 268 295 IPR000960 GO:0050660|GO:0050661
Cma16g01059 458 PRINTS Flavin-containing monooxygenase (FMO) signature 333 346 IPR000960 GO:0050660|GO:0050661
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g01059 - - - csv:116401639 761.525
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g01059 Cma-Chr16:8113473 Cma10g00791 Cma-Chr10:3638282 6.95E-19 dispersed
Cma01g00810 Cma-Chr1:4355263 Cma16g01059 Cma-Chr16:8113473 8.26E-144 transposed
Cma16g01059 Cma-Chr16:8113473 Cma06g00767 Cma-Chr6:3891113 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g505 . . . . . Bpe07g00163 . . . Cmo16g01109 . . . . . Cpe14g00878 . . . . . . . . . . . . . . . . . . . . . . Cme06g02609 . . . . . . . Bma12g00154 . . . . Cma16g01059 Car06g00685 . . . . . . . . . . . . . . . . . . . Chy06g02022 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002306 0 0 1 1 1 3 2 1 2 4 1 1 2 4 4 2 1 1 2 2 1 2 1 4 2 2 1 4 1 5 58
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g01059 Cma_Chr16 FPKM 7.227401 9.075574 7.808846 7.314149 12.533722 10.473264 11.266932 7.870291 9.288177 9.100794