Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g01066 ATGCGGGTTAAGGAGATGCACCCTCTATGCTGTATCTCTCTGGAGAATTTCAGCGGCGGAATCGGCGACCAGTCGCCGGAGGAAGCCTCGTCGTTGTCGCGGTGTAGAAGCTTGCCGGTGAGCCTTCCGGCATTTTCAAATAATAACTCGCTGCAGGTTTCTGGATCTGTAACTAGAGTGGCTGGAGTTCTATACAAGTGGACTAATTACGGCAAGGGATGGAGATCGAGATGGTTCGTTTTGAGAGATGGTGTGTTATCGTACTCCAAAATCGGCCTTCTATCTCCTGATGACGATGTTCGATTGATCGGACAGATTTCGACGAATCGGCTTCCGAGAGGGAAGCGACAGAAAACTGGGGGAATAGTTCATTTGAAGGTCTCACGGTTCCGAGAAAGCAAGTCAGATGAGCGGCGGTTTTATATATTCACTGCCACAAAGACACTTCATCTGAGAACGGAATCAAAGAACGACAGGGTGACCTGGATACAAGCTTTAGCCTCTTCCAGAAACTTATTTCCATTGAAAATTGTGAATGATAATCTTCCATTTGTACCAAATGATTTATCTCTTTCCGCTCAGAAACTCAAGAAGCGTTTACTTGAAGAGGGTATCAGTGATGCAGTTGTTAAGGACTGCGAACAAATCATCCTCTCTGAATTCTCAGAAATGCAGGGACAGCTGAAAGTACTTTTGGAAGAAAGATCTTGTTTGATTGATACCTTGAGGGAACTGGAGGCAGCTAATATAGAAATTGAAGCTAATGGAATTCACAATGGTGAATACCAGTTGATGAAACATGATTTTTCCACCGAATGCAGTGGAAAGTATAGTGAATGTACGACTACGGAGTCTTCAGAAGACGTTGAGAAACAAGATCTTGAAGATGGGTCAGATGTTGATGAAAATTTCTTTTATGACACAAATGAATCTTTTTCAGAACTCACTCTTAGCTGTGGGTCAGTAGAAGGGGGTTCTGATTCCTTAGATAAAGTTAAGGAACTTCGAAGTCGACAGGACGATGTAGAGAAGATGCACCACAAACAGAGCATTGAAAATTCTGTTGATGTTAATGTTGAGAGAAGGAAAAACCTTCCAGATCCAGTGGAGAAAGAGAAACGAGTCAGTCTTTGGTCTATGATAAAAGACAATGTTGGAAAGGATCTTACACGAGTTTGTCTCCCAGTTTATTTCAATGAGCCCATATCATCCCTTCAGAAATGTTGTGAAGACCTTGAATATTCTCATCTTTTAGACCAAGCATATGAATATGGAAGACAGGGGAACAATTTCCTCAGGGTCCTCAAGGTTGCTGCATTTGCCGTTTCTGGTTACGCTTCCTCTGAAGGACGACATTGTAAACCATTCAACCCTTTGCTTGGTGAAACGTATGAAGCTGACTTTCCCGAAAAAGGGATTCGCTTCTTCTCCGAGAAGGTCAGTCATCACCCGACGGTCATTGCGTGCCATTGTGAAGGTAGAGGATGGAGATTCTGGGGTGACAGCAACCTCCGATCAAAATTTTGGGGTCGTTCAATTCAGCTCGACCCTGTTGGAGTTCTAAACCTGGAATTTGATGATGGAGAATTATTTCAATGGAGCAAGGTCACAACAAATATTTATAATCTCATTCTTGGAAAAGTATATTGTGATCATCATGGTACAATGCAAATACGAGGCAATAGAGAATATTCTTGCACACTTAAGTTCAAGGAGCCTTCAATTCTAGATCGAAATCCTCATCAGGTTCATGGATTTGTTGAAGACGCTAATGGTCGAAAGGTTTCGACATTATTTGGCAAGTGGGATGAAGGTATGTATTACGTGGAAGGCGAGAGCGGTGTTAACCCGAAATGCAATACGCCTTCAAGTGACGAATCGATGCTGTGGAAAAGCGAAAAACCTCCTCCTAATCTCACTCGTTACAATTTAACTTCATTTGCCATCACTCTTAATGAACTGACACTAGACCTGAAGGAAAGGCTTCCACCCACGGATTCAAGACTTAGACCAGACCAGCGGCATTTGGAAAATGGCGAATACGAAAAGGCAAATGCTGAGAAACAACGCTTGGAGAGACGACAGCGAATCTCTAGGAAGTTGCAAGACAGTGGTTGGAAACCCAGATGGTTCTATAAAGAAGGTGAAGATGGGCCATACCGATACACGGGTGGCTACTGGGAAGCACGAAAGGAAGGAAAATGGGATGGTTGTCCAGATGTATTTAGCGAGTTGAACGAGAGAATGGTCGGCGAATCGGGATCAAGATTTTAG 2274 43.32 MRVKEMHPLCCISLENFSGGIGDQSPEEASSLSRCRSLPVSLPAFSNNNSLQVSGSVTRVAGVLYKWTNYGKGWRSRWFVLRDGVLSYSKIGLLSPDDDVRLIGQISTNRLPRGKRQKTGGIVHLKVSRFRESKSDERRFYIFTATKTLHLRTESKNDRVTWIQALASSRNLFPLKIVNDNLPFVPNDLSLSAQKLKKRLLEEGISDAVVKDCEQIILSEFSEMQGQLKVLLEERSCLIDTLRELEAANIEIEANGIHNGEYQLMKHDFSTECSGKYSECTTTESSEDVEKQDLEDGSDVDENFFYDTNESFSELTLSCGSVEGGSDSLDKVKELRSRQDDVEKMHHKQSIENSVDVNVERRKNLPDPVEKEKRVSLWSMIKDNVGKDLTRVCLPVYFNEPISSLQKCCEDLEYSHLLDQAYEYGRQGNNFLRVLKVAAFAVSGYASSEGRHCKPFNPLLGETYEADFPEKGIRFFSEKVSHHPTVIACHCEGRGWRFWGDSNLRSKFWGRSIQLDPVGVLNLEFDDGELFQWSKVTTNIYNLILGKVYCDHHGTMQIRGNREYSCTLKFKEPSILDRNPHQVHGFVEDANGRKVSTLFGKWDEGMYYVEGESGVNPKCNTPSSDESMLWKSEKPPPNLTRYNLTSFAITLNELTLDLKERLPPTDSRLRPDQRHLENGEYEKANAEKQRLERRQRISRKLQDSGWKPRWFYKEGEDGPYRYTGGYWEARKEGKWDGCPDVFSELNERMVGESGSRF 757
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 8157992 8164354 + CmaCh16G010660.1 Cma16g01066 311664

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g01066 757 ProSiteProfiles PH domain profile. 57 171 IPR001849 -
Cma16g01066 757 Pfam Oxysterol-binding protein 376 731 IPR000648 GO:0008289
Cma16g01066 757 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 4 340 IPR000648 GO:0008289
Cma16g01066 757 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 353 747 IPR000648 GO:0008289
Cma16g01066 757 SUPERFAMILY Oxysterol-binding protein-like 371 747 IPR037239 -
Cma16g01066 757 Gene3D - 673 736 - -
Cma16g01066 757 Coils Coil 674 701 - -
Cma16g01066 757 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED PROTEIN 2A 4 340 - -
Cma16g01066 757 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED PROTEIN 2A 353 747 - -
Cma16g01066 757 Coils Coil 228 248 - -
Cma16g01066 757 Gene3D - 462 635 - -
Cma16g01066 757 SUPERFAMILY PH domain-like 60 168 - -
Cma16g01066 757 MobiDBLite consensus disorder prediction 662 693 - -
Cma16g01066 757 Gene3D - 55 172 IPR011993 -
Cma16g01066 757 Pfam Pleckstrin homology domain 62 167 - -
Cma16g01066 757 SMART PH_update 58 173 IPR001849 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g01066 K20456 OSBP; oxysterol-binding protein 1 - csv:101213703 1415.59
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma15g01141 Cma16g01066 CCT
Cma06g00769 Cma16g01066 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01548 Cma-Chr2:8783352 Cma16g01066 Cma-Chr16:8157992 0 dispersed
Cma04g01792 Cma-Chr4:9047947 Cma16g01066 Cma-Chr16:8157992 0 dispersed
Cma13g00120 Cma-Chr13:817408 Cma16g01066 Cma-Chr16:8157992 8.64E-50 dispersed
Cma15g01141 Cma-Chr15:7251929 Cma16g01066 Cma-Chr16:8157992 0 wgd
Cma16g01066 Cma-Chr16:8157992 Cma06g00769 Cma-Chr6:3933269 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g511 Blo02g01049 Blo03g00169 Bda06g00037 . Bpe05g00588 Bpe07g00165 . . Cmo06g00789 Cmo16g01114 . Cma15g01141 Car02g01307 Car15g01037 . Cpe14g00881 Cpe05g00242 Bhi11g00212 . . . . . . Cla10g00276 Cam10g0285 Cec10g0293 Cco10g0290 Clacu10g0286 Cmu10g1126 Cre10g0534 . . Cone6ag0690 Cone9ag0692 Lsi07g01319 . . Cme06g02601 . Blo19g00281 Bda07g00005 . . . Bma05g00770 . . . Cmo15g01200 Cma06g00769 Cma16g01066 Car06g00687 Car16g01012 Cpe08g00749 . Bhi12g00421 . . Lac11g2262 Hepe06g1148 . Lcy12g1808 . . . . . . . . Csa03g04675 . Cme09g01638
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000881 4 7 4 5 4 2 5 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 2 2 2 3 4 2 88
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g01066 Cma_Chr16 FPKM 4.699172 6.113477 5.483819 4.679096 11.614921 11.130625 10.862148 0.646505 0.87907 0.717936