Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g01071 ATGGGAAGCGGAGTCTCCAGCCTCTTCTCGTGCCTTAAGCCGGAGACTCGCCCCGCCGCCCTTCCAGCCGACAATTCCGACCTCCTCTTCTCTGCCTCCGAGCCTCTCGATGAAACCCTAGGCCATTCCTTCTGTTACGTCCGCTCTTCCAACCGCTTCCTCTCTCCTTCTCATTCCGATCGCTTTCTTTCCCCTTCTCAGTCGCTTCGTTTTTCGCCTCCTCACGAACCGCTGCCGCTCGGGACTAGGACTAGAACTGGCCTGCCGGAGACTGCCTTCAAGGCCATCTCCGGCGCTTCTGTCAGTGCCAATAGTTCTATTCCCAGATCTGTTTTTATGGTCGATAGTGTTTACGACGATGCCACTGACACTGCACTTGGGGCTTGTGGTAGTGGCTGTGGAGTGAGAGGGAGTATTTTGAATGGCTTCGAGAGTACATCTTCTTTTACTGCTCTTCCGCTTCAGCCGGTGCCGAGAGGTGGTACCGAACCTTTGGAGCGAGGTGGGTTCTTTCTCTCTGGTCCAATTGAGCGTGGGGCGCTGTCTGGTCCGCTCGATGCAAATGTCGATGGTGGTGGTGGTTGTGGTGGCGGCGCTGGTGGTGGCGGTGGTGGCAGTGGCGGTGCTGGGAGAGTTCATTTCTCCGCTCCGCTGGGTGGGATGTACGTGAAGAAGAAGAGGAAGAAGAGCATTTCGGGGTTTAGGAAGGCATTTACGAGGAATTTTTCAGATAAGCGGCCGTGGGTTGTGCCGGTGTTGAATTTCGTTGGCCGGAAGGATAGCTCGACGGCGGGAGATGAGCCGGAGGTGAGGAATGAGAGTGATGTTCAATGGGCGCTTGGGAAGGCTGGGGAGGATCGGGTACATGTGGCTGTATCGGAAGAGCAAGGGTGGTTGTTTGTTGGGATTTATGATGGATTCAATGGCCCTGATGCGCCTGAATTCTTGATGGGTAATCTCTACAGAGCTGTCTTCAATGAGCTTCAGGGATTGTTTTGGGAAATTGATGATAACGATGAGGCTGCTAATTCCAACCCTTCAAACATTGCTGAAGAGAGTACAGTCAGTGTGAACGAAACTAATGCTGACCCCTCTTCCAGAGCCTCTAGTCAAAGGATTGAAACTAATGGAAATGAAGCGGAAGTGGAACCACCGGCTACTGATCGAGGATCGGTCAAGAGGGTTACATTTCAATCCGAGGTTGGATCGGAGAACAGGAGGAGGCGGCGGTTATGGGAGTATTTAGCGGAGGATGATACACAAGATGGACTTGATCTTTCGGGGTCGGAGAGATTTGCATTTTCGGTCGACGATGCGCTTAGTGTAAATAGTGCAGGTTCAGTAGCTGGTAGAAGGTGGCTGTTATTGTCCAAGTTAAAACAAGGGTTGTCAAAGCATAAGGAGGGTAATGTTAAGACTTTGTTCCCATGGAAGTATGGTTTGGGAGATAAGGAGAAGGCTGAGGCTGAGAATAGGGTGGAAGAGACATCTTATCGAAGTGGTAAGAGGAGAAAGGAAGGTTTAATTGATCATAAGTTGGTGTTGGGGGCACTATCACGAGCTCTTGAGATAACTGAATTAGCATATTTGGATATGACAGATAAGTTGCTTGATACCAATCCAGAGCTTGCTTTGATGGGTTCTTGCTTACTGGTTGTGTTAATGAGGGATGAAGATGTGTATGTAATGAATTTGGGTGATAGCCGTGCCATTGTTGCACAGTATGAGCAACAAAAAGTTGGCCCTAGTGAAGACATGAAGGAGGAGGGCGACAAAGGGACGGGCATGGAGGGTATAATTGAGGAGTCTACAACGAGCGAAGGGAAAATAACTCGAACGAATCAACCTTCAGCTCAGACGACGAGATTGACTGCATTGCAGCTATCCACCGATCATAGCACGAGCATTGAAGAAGAAGTAAGAAGAATAAAGAATGAGCACCCTGATGACAAACGGTGCATTGTCAACGATAGAGTGAAGGGTCGTCTAAAGGTTACGAGGGCGTTTGGTGCAGGATTTTTGAAACAGCCAAAATTAAATGATGTCTTACTGGAAATGTTTCGGAACGAGTATATTGGTACAGCGCCATATTTATCATGCTTACCTTCTCTTCGTCACCATAAACTTTGCCCCACGGATCAATTCATCGTGCTCTCATCTGATGGGCTATATCAATATCTAACCAATGAAGAAGTAGTTTCCTATGTTGAGAACTTTATGGAGAAGTTTCCAGATGGAGACCCTGCACAGCACTTGATAGAGGAGCTTCTTTGCCGTGCAGCCAGAAAAGCAGGAATGGACTTTCATGAATTGTTGGACATCCCACAGGGGGATCGGAGAAAGTATCATGATGATGTTACTGTTATGGTCATTTCACTTGAAGGAAGAATCTGGAAATCCTCAGGAAAATATCTTTGA 2418 48.47 MGSGVSSLFSCLKPETRPAALPADNSDLLFSASEPLDETLGHSFCYVRSSNRFLSPSHSDRFLSPSQSLRFSPPHEPLPLGTRTRTGLPETAFKAISGASVSANSSIPRSVFMVDSVYDDATDTALGACGSGCGVRGSILNGFESTSSFTALPLQPVPRGGTEPLERGGFFLSGPIERGALSGPLDANVDGGGGCGGGAGGGGGGSGGAGRVHFSAPLGGMYVKKKRKKSISGFRKAFTRNFSDKRPWVVPVLNFVGRKDSSTAGDEPEVRNESDVQWALGKAGEDRVHVAVSEEQGWLFVGIYDGFNGPDAPEFLMGNLYRAVFNELQGLFWEIDDNDEAANSNPSNIAEESTVSVNETNADPSSRASSQRIETNGNEAEVEPPATDRGSVKRVTFQSEVGSENRRRRRLWEYLAEDDTQDGLDLSGSERFAFSVDDALSVNSAGSVAGRRWLLLSKLKQGLSKHKEGNVKTLFPWKYGLGDKEKAEAENRVEETSYRSGKRRKEGLIDHKLVLGALSRALEITELAYLDMTDKLLDTNPELALMGSCLLVVLMRDEDVYVMNLGDSRAIVAQYEQQKVGPSEDMKEEGDKGTGMEGIIEESTTSEGKITRTNQPSAQTTRLTALQLSTDHSTSIEEEVRRIKNEHPDDKRCIVNDRVKGRLKVTRAFGAGFLKQPKLNDVLLEMFRNEYIGTAPYLSCLPSLRHHKLCPTDQFIVLSSDGLYQYLTNEEVVSYVENFMEKFPDGDPAQHLIEELLCRAARKAGMDFHELLDIPQGDRRKYHDDVTVMVISLEGRIWKSSGKYL 805
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 8200291 8205722 - CmaCh16G010710.1 Cma16g01071 311669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g01071 805 MobiDBLite consensus disorder prediction 342 399 - -
Cma16g01071 805 CDD PP2Cc 505 793 IPR001932 -
Cma16g01071 805 SUPERFAMILY PP2C-like 281 794 IPR036457 -
Cma16g01071 805 MobiDBLite consensus disorder prediction 342 377 - -
Cma16g01071 805 MobiDBLite consensus disorder prediction 65 85 - -
Cma16g01071 805 SMART PP2C_4 269 791 IPR001932 -
Cma16g01071 805 PANTHER PROTEIN PHOSPHATASE 2C 29 21 803 - -
Cma16g01071 805 Pfam Protein phosphatase 2C 626 758 IPR001932 -
Cma16g01071 805 PANTHER PROTEIN PHOSPHATASE 2C 21 803 IPR015655 GO:0004722|GO:0006470
Cma16g01071 805 Gene3D - 256 800 IPR036457 -
Cma16g01071 805 ProSiteProfiles PPM-type phosphatase domain profile. 269 793 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00802 Cma-Chr2:4762278 Cma16g01071 Cma-Chr16:8200291 2.12E-176 dispersed
Cma07g00996 Cma-Chr7:5127919 Cma16g01071 Cma-Chr16:8200291 5.39E-40 dispersed
Cma16g01071 Cma-Chr16:8200291 Cma20g00405 Cma-Chr20:1941128 3.12E-45 dispersed
Cma16g01071 Cma-Chr16:8200291 Cma06g00846 Cma-Chr6:4703882 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g01071 - - bhj:120092087 1466.06