Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g01084 CCTTCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACTCCTCTCTAGCGGGTCTGGGAAGAACGAGGGCTCTGTTTCACAAGACCAGACCCATTGGCTCTCTCTGCAAAGCTTGTAATAAGTTGCAGAGAGTTCATTTGGAGCTGAAAAGCGGCGATTCGAGAAACGATGCGCTACGAGCTATGGTTTGCACTGCTAGTGATTTACAGGGGTGGAAGGATTTTCCTAAGGGCCTTAGAGTTCTTCTCCTTGATGGAGATAGCAGTTCTTCAGCTGAGATAAGAACAAAGCTTGAGGAAATGGAGTATGTTGTTGTGACTTACTGCAATGAGAATGATGCATTGTCAGCCATTTCGAGCAAGCCCGATACCTTTCATGTCGCCATTGTGGAGGTAACGACGAGCAGTCACGATGGGAATTTTAAGTTTCTTGAAGCTGCCAAGGACTTGCCTACCATTATGATTTCGAATATCCATTGCCTAAGCACGATGATGAAGTGCATAGCGCTAGGTGCGATTGAGTTCCTTCAGAAACCGCTGTCAGAGGACAAACTGAGGAATATTTGGCAACATGTTGTTCATAAGGCGTTCAATGCAGGCGGTAGCGCCGTTCCCAGTTCTTTAAAGCCTATCAAAGAATCCGTTGCCTCCATTCTGCACCTAGAATCAGAAAACAGTGAAAACGATAATCCAGTCCCGAAAGAGTTAGAAATATCGAGCAGTGATGATGACAATGATCGTGAACTACTAGAAGGAAGTGATAAGTATCCAGCTCCTTCAACTCCTCAGCAGAAGCACGGTATGCGGCTGGTGGACGATGGCGACTGCCAGGATCAATTGAACTGCTTGCTCGAAAAAGAGTGCGCGGAGCAAGACGGGGAATCTAAATCTGTCGAAACTACTTGTATCAATTCGCTTGGTGAAGGCATTTCCCAAGTGGAGAACACTCAGTTACCTGACAAAGAAGGAATAAAAGAGGAAGAGAACTCTGCTGATGGCTGTGGGGCTGCGAGTAACGATGATCACGAGATACATGATCAAGACATCATTAGCAGTTCCGAAGAAAACAAGAGCAAAGCATGTGGTCTTGGTAATTCGAGTGGGACGAAAGTTAGTAGGAAGAAGATGAAGGTAGACTGGACACCCGAACTGCACCGAAAGTTCGTACAGGCAGTTGAACAACTCGGAGTGAATCAAGCAATTCCTTCTCGAATTCTCGAGCTGATGAAAGTTGAAGGCTTGACAAGGCATAATGTAGCAAGTCATCTTCAGCAGAAGTATCGGATGCACAAGAGACATATCTTGCCAAAACAAGACGACTCGAGTTGGTCTCATTCAAAGGATCCAATGAGGAAGAACTGCTATCCACAGAGACCTGTGATGGCCTTCCCTCCTCCTTATCATTCAAATCATGTAATGCCAGTGGCTCCGATCTACCCGCCGTGGGGTCATATGGCATGCCCCTCGCCCAGTGTCCAAATGTGGGTGTCGCCCGGTTATCCGTCCTGGCAACCACAAGAAATTTGGCCATGGAAGTCATATCCTGGGATGTATGCTGATGCATGGGGTTGCCCTGTGACACCACCTCCTCATAGCCCTCTCCCTTCTCATCCTCCTCAACAGCCTATTTTCAGATTTGAAAATGCAGACGCACATGATAAAAGCTATGGCATTGCGTTCAATCCGATGGAACTTCAACTGGCTGATGAAGAAATTGACAAAGTGGTGATAGAGGCAATCAGTAAGCCATGGTTACCATTGCCATTGGGGCTAAAGCCACCTTCAACAGAAAGTGTACTGTCTGAGCTCTCAAGACAAGGCATCTCAACCGTCCCTTCTCAAATCAACGGCTCTAAACTACTCCAATAA 1869 46.82 PSLSLSLSLSLSHSSLAGLGRTRALFHKTRPIGSLCKACNKLQRVHLELKSGDSRNDALRAMVCTASDLQGWKDFPKGLRVLLLDGDSSSSAEIRTKLEEMEYVVVTYCNENDALSAISSKPDTFHVAIVEVTTSSHDGNFKFLEAAKDLPTIMISNIHCLSTMMKCIALGAIEFLQKPLSEDKLRNIWQHVVHKAFNAGGSAVPSSLKPIKESVASILHLESENSENDNPVPKELEISSSDDDNDRELLEGSDKYPAPSTPQQKHGMRLVDDGDCQDQLNCLLEKECAEQDGESKSVETTCINSLGEGISQVENTQLPDKEGIKEEENSADGCGAASNDDHEIHDQDIISSSEENKSKACGLGNSSGTKVSRKKMKVDWTPELHRKFVQAVEQLGVNQAIPSRILELMKVEGLTRHNVASHLQQKYRMHKRHILPKQDDSSWSHSKDPMRKNCYPQRPVMAFPPPYHSNHVMPVAPIYPPWGHMACPSPSVQMWVSPGYPSWQPQEIWPWKSYPGMYADAWGCPVTPPPHSPLPSHPPQQPIFRFENADAHDKSYGIAFNPMELQLADEEIDKVVIEAISKPWLPLPLGLKPPSTESVLSELSRQGISTVPSQINGSKLLQ 622
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 8330917 8336050 + CmaCh16G010840.1 Cma16g01084 311682

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g01084 622 SUPERFAMILY Homeodomain-like 373 432 IPR009057 -
Cma16g01084 622 PANTHER TRANSCRIPTION ACTIVATOR GLK1 62 619 IPR044825 GO:0003700|GO:0045893
Cma16g01084 622 ProSiteProfiles Response regulatory domain profile. 80 193 IPR001789 GO:0000160
Cma16g01084 622 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR2 62 619 - -
Cma16g01084 622 Pfam Myb-like DNA-binding domain 378 425 IPR001005 -
Cma16g01084 622 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 375 431 IPR006447 GO:0003677
Cma16g01084 622 MobiDBLite consensus disorder prediction 222 272 - -
Cma16g01084 622 MobiDBLite consensus disorder prediction 227 253 - -
Cma16g01084 622 SUPERFAMILY CheY-like 77 195 IPR011006 -
Cma16g01084 622 Gene3D - 79 199 - -
Cma16g01084 622 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 372 431 IPR017930 -
Cma16g01084 622 Gene3D - 371 434 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g01084 - - - cmax:111500281 1113.98
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g01084 Cma-Chr16:8330917 Cma19g00442 Cma-Chr19:5383218 1.58E-152 dispersed
Cma16g01084 Cma-Chr16:8330917 Cma02g01589 Cma-Chr2:9032308 2.56E-106 wgd
Cma16g01084 Cma-Chr16:8330917 Cma06g00841 Cma-Chr6:4635928 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g607 . Blo03g00110 . . . Bpe07g00227 . . . Cmo16g01131 . . . . . Cpe14g00895 Cpe05g00201 . . . . . . . Cla10g00185 Cam10g0191 Cec10g0196 Cco10g0198 Clacu10g0195 Cmu10g1040 Cre10g0445 . . . . . . . . . . . . . . . Bma12g00227 . . . . Cma16g01084 . . . . . . . . . . . . . . . . . . . . Chy06g02116 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001240 1 4 1 2 1 2 1 2 2 2 2 2 8 2 2 8 2 2 5 2 3 2 2 2 2 2 2 2 6 1 77
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36592 PF00249 Myb_DNA-binding 1.40E-07 CL0123 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g01084 Cma_Chr16 FPKM 8.481764 9.099272 45.526505 47.796661 33.183792 38.04084 32.338051 15.639621 16.400961 15.730249