Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g01087 ATGGATTCGCAGCAGAACAATTTGTTTGAAACGGCATCTCAACCTGATACGGGGAACGACGCCTACACATTTCTTGAGTTCAACACACAGGGAGAAGACTTCGATTACCCTGAATTTCGCGACCCTATTAGGTCCCCTGTAGCGTGGCCGACTCCTTCCGATTCGTTAGCGGATCACACGGACCGTGGTGGTGGGTCGGATCATCAGTCTGATGCATCTCCGGTTTCGGCTGCACCGGGAAGTGCCACGAAGGGCCGGACTGGAGGAGGTTCAGGGAATAGCGGCGGTAATAATCAAATGGTTGACGTATTGGCTGCCGGGATGAGTGGGTTGACGTTTGAGGATACGGGGGATGATGATAATTATGAGTTTGGGAAGGGAAATTTCACGGAGCATGCTTGTAGGTATTGTGGGATTTCGAATCCGGCTTGCGTTGTGAGGTGTAACGTGCCGTCATGCCGTAAGTGGTTCTGCAATTCGCGAGGGAACACGTCTGGGTCCCATATTGTGAATCACCTGGTCCGGGCAAAACATAAAGAAGTTTGTCTTCACAAAGACAGTCCTCTGGGAGAAACAATTCTCGAGTGTTACAATTGTGGGTGCCGAAATGTATTCCTCCTTGGATTTATTTCTGCAAAGACAGAAAGTGTGGTTGTTCTACTCTGTAGGGAACCTTGCTTGAGTGTTAATGCTCTTAAGGATATGAATTGGGACTTGAGTCAGTGGTGCCCTCTAATTGATGATAGGTGCTTCTTGCAGTGGCTGGTTAAGATTCCTTCTGAGCAAGAGCAGTTGAGAGCACGGCAAATTAGTGCCCAACAAATAAATAAAATTGAGGAACTTTGGAAGACAAACCCAGATGCATCTCTTGAAGATCTTGAAAAACCTGGTGTGGATGATGAACCACAGCCCGTAGCATTAAAATATGAAGATGCTTATCAGTATCAAAATGTATTTGCACCTCTTATCAAGCTTGAAGCCGACTACGATAAAATGATGAAAGAATCTCAAAGCAAGGATAATGTGACTGTACGTTGGGACATTGGTCTTAACAAGAAGAGAATAGCTTATTTTGTCTTTCCAAAGGAGGACAATGAGTTGCGCCTTGTACCTGGAGATGAGTTGAGGTTACGTTATTCTGGTGATGCAGCTCATCCAGCTTGGCATTCTGTTGGACATGTGATCAAGCTAACTGCACAGGAAGAGGTTGCACTCGAGCTACGTGCTAGCCAGGGGGTTCCAGTTGATGTGGTCCATGGTTTTAGTGTTGATTTTGTGTGGAAGAGTACTAGTTTCGATCGAATGCAGGGAGCTATGAAGACATTTGCTGTTGATGAGACCAGTGTTAGTGGTTATATCTACCATCACTTATTAGGACACGAAGTGGAGGTTCAGATGGTTCGCAATACACTTCCACGTCGTTTTGGTGCGCCTGGTCTCCCAGAACTCAATGCATCTCAAGTTTTTGCTGTAAAAAGTGTTCTTCAGAAGCCAATAAGCTTGATTCAGGGCCCTCCGGGTACTGGGAAAACTGTAACTTCTGCTGCCATAGTGTATCATATGGCCAAACAAGGCCAAGGGCAGGTACTGGTCTGTGCCCCTAGTAATGTGGCTGTGGACCAACTGGCAGAGAAGATAAGTGCAACTGGGTTAAAGGTTGTTAGGCTATGTGCAAAATCAAGAGAAGCTGTAAGTTCTCCTGTGGAACACTTAACCCTTCACTATCAGGTTCGACATCTTGACACATCGGAAAGAAGTGAACTTCATAAGTTGCAACAATTGAAAGATGAACAAGGGGAGCTGTCTAGCAGTGATGAGAAAAAATATAAAGCCCTTAAGAGAGCAACAGAGAGGGAAATTTCCCAGAGTGCAGATGTTATTTGTTGCACATGTGTCGGTGCTGGAGATCCTCGCCTGTCAAATTTTAGATTTCGCCAGGTTCTTATCGATGAGTCTACTCAGGCAACCGAACCTGAATGTCTTATTCCTCTTGTTCTTGGAGCAAAGCAGGCATGTCGAGCTGTTCTTGTTGGTGACCATTGCCAACTGGGACCTGTCATTATGTGCAAAAAAGCAGCACGTGCAGGGCTGGCTCAATCCCTTTTTGAGCGTCTTGTTCTTCTTGGTGTGAAGCCAATTAGATTGCAGGTCCAATATCGTATGCACCCATCCCTTTCTGAATTTCCTTCCAACAGCTTCTACGAGGGCACACTACAAAATGGAGTTACAATCAATGAAAGGCAATCGACAGGCATCGACTTTCCATGGCCAGTTCCCAACCGTCCAATGTTCTTCTATGTTCAGATGGGACAAGAGGAGATAAGTGCCAGTGGAACTTCCTACCTAAATAGGACCGAGGCAGCAAATGTAGAAAAAATTGTGACCACTTTCTTAAGAAGTGGTGTAGTCCCTAGTCAGATTGGAGTTATTACACCATATGAGGGCCAACGAGCTTACATTGTGAACTATATGTCAAGAAATGGTGCTCTCAGACAGCAACTTTACAAGGAAATTGAGGTTGCAAGTGTGGATTCATTTCAAGGAAGGGAAAAAGATTACATCATATTGTCATGCGTAAGGAGTAACGAACATCAGGGCATTGGATTCCTGAACGATCCTCGCAGGCTCAATGTGGCTTTAACACGAGCTCGATATGGTATTGTCATTCTTGGAAACCCAAAGGTTTTGAGTAAACAGCCTCTGTGGAATAGCTTGTTGACACATTACAAGGAACATGAATGCTTGGTTGAGGGTCCATTGAATAACTTGAAACAAAGCATGATTCAGTTTCAGAAGCCTAAAAAGATATACAATGATCGGCGTCTTTTCTTTGCTGGTGGTCCTGGAGTTGTCCCCAATGATAATTTAGGGCCTGTTGCCCCATCTGGTCCTAATGCTGATAGAAGAAGTAGTCGTGGTAGAGGTTCGTACTTTCCTCCTCACCTGCCGAATGGAGCGCAAAAGCCTGGAGTGCATGCATCTGGTTATCCCATGCCACGAGTTCCTCTTCCCTCGTTTCATGGTGGTCCCCCGCATCCATATGGAATTCCAACTCGTGGAGCTGTACATGGACCAGTTGGTGCTGTTCCTCATGTTCCTCAACCAGGAAGTAGAGGCTTTGGGGCAGGGCGGGGAAATGTTGGTGCTCCTATTGGTAGTCAGCTTCCAAATCAGCAAGGCTCTCAACAAAATATTGGAAATCTTGGCTCCACTTTTAACTTTCCTGGTTTGGAGAGTCCCAATAGCCAACCATCAGTGGGTGGTCCGTTGTCTCAACTTGGGTTTGTTAACAATATGCCTGTTCAGCCGCCTACTCAAACATTTCGTGATGGATACTCCATGGGAGGAATTTCGCAGGACTTCTTGGGCGATGACTTTAAAAGCCAGGGATCACATGTTCCATACAATGTTACGGATTTCTCCACTCAGGCCTCTCAAACTGGATATCCCATTGATTATGTTAGTCAAGGAGCACAGGGTGGCTTTCCAGGGAGCTTCCTGAACCAGAATTCTCAATCTGGATATAACCGTTTCGGAACAGGAAATGATTTCATGTCGCAGGACTACATGAACCATGGTTCACAAGGTTTATTTACTCAAGTTGGTTTCAGCGATCCCTCACTAGATGAAGCCTTCCAAAGTCACTATAACGTGACAAATACAAACTCACTACAGTCTCAGGGCATGATGAATTCTCTCTACTCCCAGCCCTTTGCACATTACAATTCACAGCCTTCGACCCAGCAGGCCCCACCACAGCAGCAGCCTCAGCAGGGCCAGAGCTCTCAAAATCAGAAAATTCACTTTAGTGGTTGA 3816 45.75 MDSQQNNLFETASQPDTGNDAYTFLEFNTQGEDFDYPEFRDPIRSPVAWPTPSDSLADHTDRGGGSDHQSDASPVSAAPGSATKGRTGGGSGNSGGNNQMVDVLAAGMSGLTFEDTGDDDNYEFGKGNFTEHACRYCGISNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNALKDMNWDLSQWCPLIDDRCFLQWLVKIPSEQEQLRARQISAQQINKIEELWKTNPDASLEDLEKPGVDDEPQPVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTVRWDIGLNKKRIAYFVFPKEDNELRLVPGDELRLRYSGDAAHPAWHSVGHVIKLTAQEEVALELRASQGVPVDVVHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEVQMVRNTLPRRFGAPGLPELNASQVFAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSERSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLSNFRFRQVLIDESTQATEPECLIPLVLGAKQACRAVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSTGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNSLLTHYKEHECLVEGPLNNLKQSMIQFQKPKKIYNDRRLFFAGGPGVVPNDNLGPVAPSGPNADRRSSRGRGSYFPPHLPNGAQKPGVHASGYPMPRVPLPSFHGGPPHPYGIPTRGAVHGPVGAVPHVPQPGSRGFGAGRGNVGAPIGSQLPNQQGSQQNIGNLGSTFNFPGLESPNSQPSVGGPLSQLGFVNNMPVQPPTQTFRDGYSMGGISQDFLGDDFKSQGSHVPYNVTDFSTQASQTGYPIDYVSQGAQGGFPGSFLNQNSQSGYNRFGTGNDFMSQDYMNHGSQGLFTQVGFSDPSLDEAFQSHYNVTNTNSLQSQGMMNSLYSQPFAHYNSQPSTQQAPPQQQPQQGQSSQNQKIHFSG 1271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 8352928 8367772 + CmaCh16G010870.1 Cma16g01087 311685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g01087 1271 CDD DEXXQc_UPF1 482 720 - -
Cma16g01087 1271 Pfam RNA helicase UPF1, 1B domain 337 426 IPR040812 -
Cma16g01087 1271 Pfam AAA domain 585 688 IPR041677 GO:0004386
Cma16g01087 1271 Pfam RNA helicase (UPF2 interacting domain) 132 285 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
Cma16g01087 1271 Gene3D - 446 719 IPR027417 -
Cma16g01087 1271 CDD ZBD_UPF1-like 133 255 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
Cma16g01087 1271 CDD 1B_UPF1-like 338 425 IPR040812 -
Cma16g01087 1271 Gene3D - 338 426 - -
Cma16g01087 1271 Pfam AAA domain 698 893 IPR041679 -
Cma16g01087 1271 Gene3D - 720 931 IPR027417 -
Cma16g01087 1271 PANTHER REGULATOR OF NONSENSE TRANSCRIPTS 1-LIKE PROTEIN 108 1048 - -
Cma16g01087 1271 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 479 915 IPR027417 -
Cma16g01087 1271 MobiDBLite consensus disorder prediction 953 995 - -
Cma16g01087 1271 MobiDBLite consensus disorder prediction 1 100 - -
Cma16g01087 1271 MobiDBLite consensus disorder prediction 1 26 - -
Cma16g01087 1271 PANTHER DNA2/NAM7 HELICASE FAMILY 108 1048 IPR045055 -
Cma16g01087 1271 MobiDBLite consensus disorder prediction 1237 1271 - -
Cma16g01087 1271 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 491 623 IPR014001 -
Cma16g01087 1271 CDD SF1_C_Upf1 721 910 IPR041679 -
Cma16g01087 1271 Pfam Type III restriction enzyme, res subunit 486 550 IPR006935 GO:0003677|GO:0005524|GO:0016787
Cma16g01087 1271 Gene3D - 568 620 - -
Cma16g01087 1271 MobiDBLite consensus disorder prediction 1057 1086 - -
Cma16g01087 1271 MobiDBLite consensus disorder prediction 86 100 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g00659 Cma16g01087 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01029 Cma-Chr2:6119964 Cma16g01087 Cma-Chr16:8352928 2.76E-59 dispersed
Cma04g01350 Cma-Chr4:6876768 Cma16g01087 Cma-Chr16:8352928 2.33E-27 dispersed
Cma15g01399 Cma-Chr15:8819121 Cma16g01087 Cma-Chr16:8352928 2.64E-57 dispersed
Cma16g01087 Cma-Chr16:8352928 Cma17g00622 Cma-Chr17:5297127 2.46E-42 dispersed
Cma18g00878 Cma-Chr18:7596224 Cma16g01087 Cma-Chr16:8352928 7.77E-28 dispersed
Cma16g01087 Cma-Chr16:8352928 Cma06g00837 Cma-Chr6:4592850 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g01087 K14326 - csv:101214107 2485.68