Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g01089 ATGGTGGAATCGGTGGAGTTACCGAGTCGACTCGGAATTCTTCCCTTCAGAAACAAGGTTCTTTTACCAGGCGCCATTATTCGGATTCGATGCACTTCATCCAGCAGTGTGAAACTGGTGGAGCAAGAGTTGTGGCAGCGAGAAGAGAAGGGATTGATTGGTATTCTTCCAGTTCGAGATGATGCTGACGCCTCAGCGATAGGTCCTGTGTTATCTCAAGTTTTCAGTTCATGTTGGAACTCATTTCAAACTTTTCGGATTTTGAAATGTTTTTTCACACGAAAATCTGATATTCTTGTTCCTAATTGCAATTTGCATTTGTTTGTGAAACTGGTGGAGCAAGAGTTGTGGCAGCGAGAAGAGAAGGGATTGATTGGTATTCTTCCAGTTCGAGATGATGCTGACGCCTCAGCGATAGGTCCTGTGTTATCTCAAGGTGTGGGAAGTGATTCTGGAGATCGTAGCTCGAGGGTTCAATCTGGTTCCTCTGACTCGCAAAGAGTAGATGGGAAAAATCATCAGGAAGTTATTCAATGGCATTCAAGGGGTGTTGCCGCTCGTGCCTTGCAACTTTCTAGAGGAGTGGAGAAGCCGAGTGGAAGAGTGACATATACAGTTGTGCTAGAAGGTTTATGTAGATTTACTGTCCAGGAACTTAGCACCAGGGGAACATACTATACTGCACGAATATCACATTCAGAAATGACAAAGGAAGAGATGGAGCAAGTGGAGCAAGACCCTGAATTTGTTTCATTATCTCGACAATTCAAAGCTACTGCGATGGAGCTTATATCTGTTCTTGAACAGAAACAAAAAACTGGAGGAAGGATTAAAGTTCTTTTGGAGACAGTTCCAGTTCATAAACTGGCTGATATATTTGTCGCCAGCTTTGAGATGAGTTTTGAAGAGCAATTATCTATGCTGGATTCAGTTGACTTAAGAGTAAGGCTTTCAAAAGCAATGGAGTTAGTTGACAGGCATTTGCAGTCAATACGTGTAGCTGAGAAGATTACGCAAAAAGTAGAAGGACAGTTATCAAAATCACAGAAAGAATTCCTTTTGCGCCAGCAGATGAGGGCCATAAAGGAGGAGCTTGGTGATGATCACGATGAAGATGATTTGGTTGCCCTGGAAAGAAAGATGCAAAGTGCTGAAATGCCTGCCAATATCTGGAAGCATGCCCAGAGGGAGCTGAGGAGCCTTAAAAAGATGCAACCTCAACAACCGGGATATAACAGCTTGCGAGTTTACCTCGAGCTTCTTGCTGACCTTCCATGGAAAAAGGCTACTGAAGAACATGAATTAGACTTGAAAGCTGCCAAGGAACGTCTTGATAGTGACCACTATGGTTTGGTCAAGGTCAAGCAACGAATTATTGAATATCTTGCTGTTCGGAAGCTTAAGCCAGATGCAAGAGGGCCTGTGCTGTGCTTTGTTGGGCCACCAGGTGTGGGAAAGACATCTTTGGCATCATCTATTGCTGCTGCTCTGGGCAGAAAATTTGTACGCATATCCCTGGGTGGTGTTAAAGATGAGGCTGACATTAGAGGACATAGGAGGACCTACATTGGAAGCATGCCAGGGCGTCTTATTGATGGACTGAAGAGAGTAGCTGTTTGCAACCCAGTCATGCTATTAGATGAGATTGACAAGACAGGTTCTGATGTGCGAGGCGATCCAGCTTCCGCTCTACTGGAGGTTCTTGACCCTGAACAGAACAAAAAGTTCAATGATCATTATTTGAATGTCCCATTTGACCTTTCAAATGTCGTATTTGTGGCCACTGCTAACAGAATGCAGCCCATACCTCCTCCTCTTTTAGATAGGATGGAAGTCATTGAGCTGCCTGGATACACACCAGAGGAAAAACTTAAGATTGCAATGCACCATTTGATTCCTCGAGTTTTAGAACAACATGGACTAAGCGCTGAATTTCTTCAAATTCCAGAGGCTATGGTTAAACTTGTTATTCAAAGATACACTAGAGAGGCTGGTGTACGAAACCTTGAGAGAAATTTGGCTGCGTTGGCTCGTGCTGCTGCTGTTAGAGTCGTGGAAAGAGATCAAACTGCCCCGTTGAATAAAGATGTGCATCAGGTTTCTTCTCCTCTGTTGGAAAACAGACTTTCTGATGGAGCTGAAGTAGATATGGAGGTCATCCCAATCGGAGCGGATCATGAGATGCCAAACTCATTGAGGATAGCCTCTCCATTGGTTGTTGATGAGGCTATGCTTGAAAAAGTGCTTGGGCCTCCTAGATTTGATGACAGAGAAGCAGCCGAGCGGGTTATATCACCTGGGATATCGGTTGGATTGGTTTGGACTGCCTTTGGGGGAGAGGTTCAGTTCGTGGAGGCTACAGCAATGTCCGGAAAGGGAGAATTACATCTCACTGGCCAGCTCGGTGACGTCATTAAAGAATCAGCTCAGATAGCCCTTACCTGGGTACGAGCGAGGGCAACAGATCTGAAACTGGCAGCAGCTTGTGAATCTAATCTTTTGGAGGGTCGTGATATTCATATACATTTTCCCGCTGGTGCGGTGCCTAAGGATGGGCCTTCAGCTGGTGTGACTCTTGTAACAGCTTTGGTCTCACTGTTTGGTAAGAAAAGAGTTAGGGCTGATACTGCAATGACAGGAGAGATGACTCTGAGGGGTCTTGTTCTACCTGTTGGTGGCATCAAGGACAAGATATTAGCTGCACATCGTTATGGGATAAAGAGGGTTATTCTCCCAGAGAGAAATTTGAAAGATTTAGCGGAAGTTCCTTCAGCCGTGCTTGCTAGTTTGGAGATATTACTAGCTAAGCGGATGGAAGACGTCCTGGAGCAGGCTTTTGAAGGTGGGTGTCCATGGAGGCTACACCCCAAGTTATGA 2877 45.05 MVESVELPSRLGILPFRNKVLLPGAIIRIRCTSSSSVKLVEQELWQREEKGLIGILPVRDDADASAIGPVLSQVFSSCWNSFQTFRILKCFFTRKSDILVPNCNLHLFVKLVEQELWQREEKGLIGILPVRDDADASAIGPVLSQGVGSDSGDRSSRVQSGSSDSQRVDGKNHQEVIQWHSRGVAARALQLSRGVEKPSGRVTYTVVLEGLCRFTVQELSTRGTYYTARISHSEMTKEEMEQVEQDPEFVSLSRQFKATAMELISVLEQKQKTGGRIKVLLETVPVHKLADIFVASFEMSFEEQLSMLDSVDLRVRLSKAMELVDRHLQSIRVAEKITQKVEGQLSKSQKEFLLRQQMRAIKEELGDDHDEDDLVALERKMQSAEMPANIWKHAQRELRSLKKMQPQQPGYNSLRVYLELLADLPWKKATEEHELDLKAAKERLDSDHYGLVKVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIAAALGRKFVRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVAVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKKFNDHYLNVPFDLSNVVFVATANRMQPIPPPLLDRMEVIELPGYTPEEKLKIAMHHLIPRVLEQHGLSAEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALARAAAVRVVERDQTAPLNKDVHQVSSPLLENRLSDGAEVDMEVIPIGADHEMPNSLRIASPLVVDEAMLEKVLGPPRFDDREAAERVISPGISVGLVWTAFGGEVQFVEATAMSGKGELHLTGQLGDVIKESAQIALTWVRARATDLKLAAACESNLLEGRDIHIHFPAGAVPKDGPSAGVTLVTALVSLFGKKRVRADTAMTGEMTLRGLVLPVGGIKDKILAAHRYGIKRVILPERNLKDLAEVPSAVLASLEILLAKRMEDVLEQAFEGGCPWRLHPKL 958
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 8369222 8382536 - CmaCh16G010890.1 Cma16g01089 311687

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g01089 958 Pfam ATPase family associated with various cellular activities (AAA) 476 613 IPR003959 GO:0005524|GO:0016887
Cma16g01089 958 Gene3D - 2 76 IPR046336 -
Cma16g01089 958 PANTHER ATP DEPENDENT LON PROTEASE FAMILY MEMBER 102 958 IPR027065 GO:0004176|GO:0004252|GO:0005524|GO:0030163
Cma16g01089 958 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 766 782 - -
Cma16g01089 958 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 480 499 - -
Cma16g01089 958 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 878 897 - -
Cma16g01089 958 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 901 919 - -
Cma16g01089 958 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 848 867 - -
Cma16g01089 958 ProSiteProfiles Lon proteolytic domain profile. 763 948 IPR008269 GO:0004176|GO:0004252|GO:0006508
Cma16g01089 958 PANTHER LON PROTEASE HOMOLOG 2, PEROXISOMAL 102 958 - -
Cma16g01089 958 SMART AAA_5 472 617 IPR003593 -
Cma16g01089 958 Pfam ATP-dependent protease La (LON) substrate-binding domain 13 326 IPR003111 -
Cma16g01089 958 CDD AAA 457 618 - -
Cma16g01089 958 Gene3D - 437 615 IPR027417 -
Cma16g01089 958 ProSitePatterns ATP-dependent serine proteases, lon family, serine active site. 851 859 IPR008268 GO:0004176|GO:0004252|GO:0006508
Cma16g01089 958 PANTHER ATP DEPENDENT LON PROTEASE FAMILY MEMBER 1 71 IPR027065 GO:0004176|GO:0004252|GO:0005524|GO:0030163
Cma16g01089 958 SUPERFAMILY Ribosomal protein S5 domain 2-like 766 945 IPR020568 -
Cma16g01089 958 Hamap Lon protease homolog 2, peroxisomal [LONP2]. 3 958 IPR027501 GO:0004252|GO:0006515
Cma16g01089 958 ProSiteProfiles Lon N-terminal domain profile. 11 326 IPR003111 -
Cma16g01089 958 SUPERFAMILY PUA domain-like 174 325 IPR015947 -
Cma16g01089 958 Gene3D - 616 754 - -
Cma16g01089 958 SMART lon_5 10 326 IPR003111 -
Cma16g01089 958 TIGRFAM lon: endopeptidase La 13 946 IPR004815 GO:0004176|GO:0005524|GO:0006508
Cma16g01089 958 MobiDBLite consensus disorder prediction 148 167 - -
Cma16g01089 958 MobiDBLite consensus disorder prediction 142 172 - -
Cma16g01089 958 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 424 690 IPR027417 -
Cma16g01089 958 Gene3D - 236 369 - -
Cma16g01089 958 Gene3D - 765 949 IPR014721 -
Cma16g01089 958 Gene3D - 91 232 IPR046336 -
Cma16g01089 958 Gene3D - 376 424 - -
Cma16g01089 958 Pfam Lon protease (S16) C-terminal proteolytic domain 740 947 IPR008269 GO:0004176|GO:0004252|GO:0006508
Cma16g01089 958 PANTHER LON PROTEASE HOMOLOG 2, PEROXISOMAL 1 71 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g01089 K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53] - csv:101213865 1545.41
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g00835 Cma16g01089 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g01032 Cma-Chr12:8195118 Cma16g01089 Cma-Chr16:8369222 5.90E-157 transposed
Cma16g01089 Cma-Chr16:8369222 Cma06g00835 Cma-Chr6:4578203 2.64E-35 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g584 Blo02g01005 . . . Bpe05g00540 . . . Cmo06g00858 Cmo16g01139 . . . . . Cpe14g00900 . Bhi11g00104 . . . . Mch10g1616 . Cla10g00192 Cam10g0198 Cec10g0204 Cco10g0205 Clacu10g0202 Cmu10g1046 Cre10g0452 . . Cone6ag0622 Cone9ag0625 Lsi07g01235 . . Cme06g02505 . . . . . . Bma05g00397 . . . . Cma06g00835 Cma16g01089 . Car16g01031 . . . . . . . . . . . . . . . . . Csa03g00209 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008731 0 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g01089 Cma_Chr16 FPKM 10.616166 11.164313 12.507693 13.765631 10.80615 10.992117 11.798458 28.243015 25.190748 27.187