Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g01097 ATGGCGTTTTCAAAGCTTTTCCCTGAGTTCTACGAAGGATTTTCCATGACCCAAACCACTTCTCTGCTATTGCGATTTCCGTCTTTCCCTTTCGTTACGAAATCACTGGCTTCTCAAATCTTCCGCCATTTTCGTTGTCGCGAGTTGCTTCGAGTTCACTCGCGATTAATCCTCCTCCTCTCTTTGCCGTTCATTTACTTCTTTCTTTCGAATCCTCGCCGTTCTGTTGTTCTCAAGTTGTTTGTCGTACTTTTCTTCTCCATCGCGGCTTTGATTTTTCTCAATCTTGCAGTCCCTCGTTTCCCTTCTTTGATTCGTTTGTTTCTTGTTCGATCGTCTTCAATTAACGCGTTCTCATCTTCTGCTGCGACGAAGGCTGTTTCCAATGTTCGTTGGTCGATAGGGTCGAACCCCAAATCGGAGAAACGGTTGATGTCGGGTTCTTGGGTGAAAGTTTACAGTAATGGCGACGTTTACGAGGGGGAATTTCATCAAGGGAGGTGCTCGGGTAGTGGGGTTTATCACTACCATATGAGTGGAAGATATGAAGGCGATTGGATTGATGAGAAGTATGATGGGTATGGCGTAGAGACATGGGCGAAAGGGAGTAGGTACCGTGGTCAGTACAGACAAGGCTTGAGGAATGGAATTGGGATTTACAGATTCTACACAGGGGATGTCTATGCTGGGGAGTGGTCTAATGGCCAGTGCCATGGTTCTGGAGTTCATACTTGTCAAGATGGGAGCCGCTATGTTGGGGAGTTCAAGTGGGGTGTCAAACATGGATTGGGTCACTACCATTATAGAAACGGAGATACGTACGCAGGAGAGTATTTTGCAGACAAGATGCACGGCTTTGGAGTTTATCGGTTTGGCAATGGACATCGTTACGAGGGAGCTTGGCACGAAGGAAATAGGCAAGGGCTTGGTATGTACACTTTTAGGAATGGAGAGAGACAGTCTGGTCATTGGCAAAATGGTGTTCTTGATGTGCCCAGTCTTGAAAGTAGCCATCCAGGGTCTTCTTATGCTGTCAGTCATGCTAAGGTTCTCGCTGCAGTTCAGGAAGCAAGGAGAGCTGCAGAGAAAGCATTTGATGCAGGAAGGGTGGACGACAGAGTTAACAAAGCTGTAGCTGCTGCTAATAAAGCAGCAAACGCAGCAAGAGTTGCAGCTGTGAAGGCTGTCCAGAAACAAATGGATCAAGAAACCTACACCAACCCACCAATCTTACTGGTCTGA 1242 46.86 MAFSKLFPEFYEGFSMTQTTSLLLRFPSFPFVTKSLASQIFRHFRCRELLRVHSRLILLLSLPFIYFFLSNPRRSVVLKLFVVLFFSIAALIFLNLAVPRFPSLIRLFLVRSSSINAFSSSAATKAVSNVRWSIGSNPKSEKRLMSGSWVKVYSNGDVYEGEFHQGRCSGSGVYHYHMSGRYEGDWIDEKYDGYGVETWAKGSRYRGQYRQGLRNGIGIYRFYTGDVYAGEWSNGQCHGSGVHTCQDGSRYVGEFKWGVKHGLGHYHYRNGDTYAGEYFADKMHGFGVYRFGNGHRYEGAWHEGNRQGLGMYTFRNGERQSGHWQNGVLDVPSLESSHPGSSYAVSHAKVLAAVQEARRAAEKAFDAGRVDDRVNKAVAAANKAANAARVAAVKAVQKQMDQETYTNPPILLV 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 8449840 8454322 - CmaCh16G010970.1 Cma16g01097 311695

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g01097 413 SUPERFAMILY Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 144 248 - -
Cma16g01097 413 PANTHER - 18 404 - -
Cma16g01097 413 Pfam MORN repeat 297 319 IPR003409 -
Cma16g01097 413 Pfam MORN repeat 251 273 IPR003409 -
Cma16g01097 413 Pfam MORN repeat 228 250 IPR003409 -
Cma16g01097 413 Pfam MORN repeat 159 177 IPR003409 -
Cma16g01097 413 Pfam MORN repeat 205 227 IPR003409 -
Cma16g01097 413 Pfam MORN repeat 274 296 IPR003409 -
Cma16g01097 413 Pfam MORN repeat 182 204 IPR003409 -
Cma16g01097 413 SUPERFAMILY Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 223 329 - -
Cma16g01097 413 Gene3D - 141 188 - -
Cma16g01097 413 Gene3D - 235 279 - -
Cma16g01097 413 Gene3D - 189 234 - -
Cma16g01097 413 Gene3D - 280 347 - -
Cma16g01097 413 PANTHER PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE RELATED 18 404 - -
Cma16g01097 413 SMART morn 226 247 IPR003409 -
Cma16g01097 413 SMART morn 203 224 IPR003409 -
Cma16g01097 413 SMART morn 295 316 IPR003409 -
Cma16g01097 413 SMART morn 272 293 IPR003409 -
Cma16g01097 413 SMART morn 157 178 IPR003409 -
Cma16g01097 413 SMART morn 249 270 IPR003409 -
Cma16g01097 413 SMART morn 180 201 IPR003409 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g01097 - - - csv:101208169 711.449
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g00826 Cma16g01097 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g01007 Cma-Chr8:6323084 Cma16g01097 Cma-Chr16:8449840 2.89E-175 dispersed
Cma09g00805 Cma-Chr9:3930776 Cma16g01097 Cma-Chr16:8449840 8.10E-101 dispersed
Cma16g01097 Cma-Chr16:8449840 Cma17g00075 Cma-Chr17:366275 1.50E-166 dispersed
Cma16g01097 Cma-Chr16:8449840 Cma06g00826 Cma-Chr6:4480486 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g571 . Blo03g00134 Bda06g01305 . . Bpe07g00201 . . Cmo06g00849 Cmo16g01146 . . . . Sed05g2359 Cpe14g00907 . Bhi11g00093 Tan01g2116 Cmetu06g0894 . Hepe06g1074 Mch10g1606 . Cla10g00203 Cam10g0209 Cec10g0214 Cco10g0215 Clacu10g0212 Cmu10g1055 Cre10g0463 . . Cone6ag0628 Cone9ag0631 Lsi07g01244 . . Cme06g02515 . . . . . . . Bma12g00195 . . Cmo19g00513 Cma06g00826 Cma16g01097 . Car16g01039 . . . . . . . . . . . . . . . . . Csa03g00218 Chy06g02102 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010482 1 1 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 0 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g01097 Cma_Chr16 FPKM 46.23484 45.62072 25.578302 25.787197 7.338023 7.001903 7.371417 29.017927 28.363583 31.18091