Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g01101 ATGGAGGATCGGTTCGAGCCATTGAAGGACCTTGGCTCTGGAAATTTTGGAGTTGCTAGGCTCGTTCGAGACAAGAAGACGAACGAGCTTGTTGCTGTCAAGTACATTGAGAGAGGGAAGAAGATTGATGAGAAAGTTCAAAGGGAAATCATTAATCATCGATCGTTGCAGCATCCTAACATTATCAGATTCAAGGAGGTCTTCTTAACCCCAACTCATTTGGCCATTGTCATGGAATATGCAGCTGGTGGGGAACTTTTCGGAAGAATATGCAGCGCTGGTCGATTTAGTGAAGACGAGGCAAGATTTTTCTTCCAGCAGCTAATATCCGGAGTCAGCTACTGCCATTCCATGCAAATTTGTCACAGGGATCTGAAACTCGAAAACACACTCTTGGATGGAAGTCCTACACCACAACTTAAGATATGTGACTTTGGTTACTCAAAGTCTGGCTTATTACACTCGCAACCGAAATCGACTGTTGGGACGCCTGCATATATCGCTCCGGAGGTTCTATCACGGAAGGAGTACGATGGCAAGATTTCAGATGTTTGGTCATGTGGAGTTACATTGTATGTGATGTTGGTTGGTGCGTACCCGTTCGAAGATCCCGAAGATCCAAGAAATTTCCGTAAGACGATAGCGAGAATATTGAGTGTTCAATACTCCATACCCGATTACGTACGCGTGTCCGTGGAGTGTCGCAACCTACTCTCTCGCATATTTGTTGCCAACCCTGCAAAGAGGATCACTATCCAAGAGATAAAGCAGCTGCCATGGTTTTTCAAGAACTTGCCAAAGGAACTGATTGAGATTGAGAAAACCAACTTCAAACAACAAGAACACAACCAGCTCTCACAGAGCGTCGAGGAAATCATGCAGATTGTTCGGAAAGCAATGACGCCTGGAGAAGGATCTAAAGTCGGGGACCAAGCGTTGGCCGGAGGGTCGGGGCTCGACGATCTCGACGCTGATATCGATTCTGAAGTCGATGTCAGTGGTGACTATGTAACTGCTGTTTGA 1023 46.04 MEDRFEPLKDLGSGNFGVARLVRDKKTNELVAVKYIERGKKIDEKVQREIINHRSLQHPNIIRFKEVFLTPTHLAIVMEYAAGGELFGRICSAGRFSEDEARFFFQQLISGVSYCHSMQICHRDLKLENTLLDGSPTPQLKICDFGYSKSGLLHSQPKSTVGTPAYIAPEVLSRKEYDGKISDVWSCGVTLYVMLVGAYPFEDPEDPRNFRKTIARILSVQYSIPDYVRVSVECRNLLSRIFVANPAKRITIQEIKQLPWFFKNLPKELIEIEKTNFKQQEHNQLSQSVEEIMQIVRKAMTPGEGSKVGDQALAGGSGLDDLDADIDSEVDVSGDYVTAV 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 8475054 8479126 + CmaCh16G011010.1 Cma16g01101 311699

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g01101 340 ProSiteProfiles Protein kinase domain profile. 5 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma16g01101 340 ProSitePatterns Serine/Threonine protein kinases active-site signature. 120 132 IPR008271 GO:0004672|GO:0006468
Cma16g01101 340 CDD STKc_SnRK2 4 260 - -
Cma16g01101 340 Gene3D Phosphorylase Kinase; domain 1 1 80 - -
Cma16g01101 340 Pfam Protein kinase domain 6 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma16g01101 340 PANTHER SERINE/THREONINE KINASE 3 329 - -
Cma16g01101 340 SUPERFAMILY Protein kinase-like (PK-like) 3 285 IPR011009 -
Cma16g01101 340 PANTHER SERINE/THREONINE-PROTEIN KINASE SAPK1 3 329 - -
Cma16g01101 340 ProSitePatterns Protein kinases ATP-binding region signature. 11 34 IPR017441 GO:0005524
Cma16g01101 340 Gene3D Transferase(Phosphotransferase) domain 1 81 268 - -
Cma16g01101 340 SMART serkin_6 5 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g01101 K14498 SNRK2; serine/threonine-protein kinase SRK2 [EC:2.7.11.1] - csv:101207431 636.721
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g00823 Cma16g01101 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00819 Cma-Chr3:6226646 Cma16g01101 Cma-Chr16:8475054 0 dispersed
Cma07g00557 Cma-Chr7:2391656 Cma16g01101 Cma-Chr16:8475054 3.75E-180 dispersed
Cma16g01101 Cma-Chr16:8475054 Cma20g01155 Cma-Chr20:9156887 5.07E-169 dispersed
Cma16g01101 Cma-Chr16:8475054 Cma06g00823 Cma-Chr6:4433702 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g558 Blo02g01010 . . Bda08g00611 Bpe05g00545 . . . Cmo06g00845 Cmo16g01150 . . . . . Cpe14g00910 . Bhi11g00087 . . . . Mch10g1603 . Cla10g00206 Cam10g0212 Cec10g0217 Cco10g0218 Clacu10g0215 Cmu10g1058 Cre10g0466 . . . . Lsi07g01247 . . Cme06g02518 . . . . . . Bma05g00737 . . . . Cma06g00823 Cma16g01101 . Car16g01042 . . Bhi05g00574 Tan07g1902 . Lac11g2344 Hepe06g1246 . . . . . . . . . . Csa03g00222 Chy06g02099 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000065 7 16 8 7 7 11 10 10 11 8 11 11 10 12 10 9 11 14 10 10 9 6 8 6 7 11 4 12 10 7 283
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69209 PF00069 Pkinase 2.60E-71 CL0016 Cma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g01101 Cma_Chr16 FPKM 50.745998 52.241932 19.439447 19.085194 15.250587 12.659147 13.527541 23.432775 22.550711 21.689526