Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g01108 ATGGGCAAACAAGGGCCTTGCTATCACTGTGGAGTTACAAGCACACCACTCTGGCGTAATGGACCTCCTGATAAGCCTGTATTGTGCAATGCCTGTGGATCTCGATGGAGGACGAAGGGAAATCTTACAAACTATACCCCTCTTCACGCTCGGGCGGATCCTGATGAGTGTGAGGATAAAAGGGTCTCTAAGTGGAAGAACTTGTCAATGTGTAAGAACAAAGAAGTGAAACTGCTTAAAAGAAAACAGTATCAAGATAATGGAGTTGTGGTTGGGGTTATCCCTGATCATGCTCAGAGCTTCCACAAGACAGTCGATGAAGATACGAGTTATAGATCAAGTTCGGGATCGGCCATATCAAACTCGGAGAGTTGTCAACAATTTGGTAGTGCAGATGCAAGTGATCTGACAGGCCCCTCACAGTCAACAGCGTGGGAGACGGTAGTGCCCTCGAGAAAGAGGACCTGTGTTGGTCGTTCGAAGTCTACTGCAGTTGAGAAACTCACTCAAGATCTATACACGATTTTACGTGAACAGCAGTCTTACTTCTCTGGATCTTCCGAGGAAGATTTGCTTTTTGATAGCGAAACTCCGATGGTCTCTGTAGAGATAGGACATGGAAGCGTTCTCATGAGGCATCCAAGTTTGATTGCCCGAGAAGAGGAGTCGGAAGCAAGCTCGATTTCAGTTGATAATAAACAGTTCACTCTAAATGAGGTTTATTCGGAACCCTCCATCCTTCCTGTACATTATGAAGCTGACAACAAGGTTGTAAATTTTTCCACTCTTGGAATTGGGAGAAAGCACTCTAATGGACAAGGGTTCTTGCAGGAACAAGTTAAAAGGGACAGGCCTCAATCAGAAAAAACGCAAGCACTTGGAAACCATAACTCGCTGCTCTGTAATATAGATCTAATGGACATTCTCAATTTCAGGGAGTTTACGAAGCAATTGACGAGCGAAGATCAGCAAGAATTAATGAAGTATCTTCCATCTGTTGATACTGAAGAGCTTCCCGACAGCTTGAATAGCATGTTTGAAAGCCCTGAATTCAAGGAGAATTTGAATTCTTTTAAGCAGCTGCTCACTGAAGGAGTGTTTGATTTATCCTTTCCGGGTGCGAAAAGAGAAGACTGCAGGAGTTTGAGTAGGCTCGTGTTGTGGGATTTGTCGAAATCGAAATGGGTGGAACGGTATCATTTACTCAAGACATGTAGCAGTGGAGTGGCTGTTCAAGGTTTTGCTGCTGCATCAAGTGGCTTTATGAATGGAAAGAGAGTGCTTGATGGCCAAAACAAAAAGCTTTCAGAAACCAGGACTGCAATGAAGAGTCCCAAAAGGGGGACGACAAAGACGATCGTGGAAAGCAAGGAACTCGTCGACAGCGACGGTTCTTGCTTCAGTCCAAGAAGTTTATTTGCTTTGCCTTCTGATGGAGGTTCCTTCACACTGGAATCTCTCCATTTCGATGAGGATAGTTCAGACCAGGATCTCCTATTGGATGTGAGGTCGAACAACTCCTTTCCTCAAGCCGAGCTCCTTCATCCGTCCCTGAGTTTCGGTACTCCACAGGCAAGCAATAGTAGTAGCTCGGTAAATCTTCGACTTATGCATCATTGA 1620 44.88 MGKQGPCYHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGNLTNYTPLHARADPDECEDKRVSKWKNLSMCKNKEVKLLKRKQYQDNGVVVGVIPDHAQSFHKTVDEDTSYRSSSGSAISNSESCQQFGSADASDLTGPSQSTAWETVVPSRKRTCVGRSKSTAVEKLTQDLYTILREQQSYFSGSSEEDLLFDSETPMVSVEIGHGSVLMRHPSLIAREEESEASSISVDNKQFTLNEVYSEPSILPVHYEADNKVVNFSTLGIGRKHSNGQGFLQEQVKRDRPQSEKTQALGNHNSLLCNIDLMDILNFREFTKQLTSEDQQELMKYLPSVDTEELPDSLNSMFESPEFKENLNSFKQLLTEGVFDLSFPGAKREDCRSLSRLVLWDLSKSKWVERYHLLKTCSSGVAVQGFAAASSGFMNGKRVLDGQNKKLSETRTAMKSPKRGTTKTIVESKELVDSDGSCFSPRSLFALPSDGGSFTLESLHFDEDSSDQDLLLDVRSNNSFPQAELLHPSLSFGTPQASNSSSSVNLRLMHH 539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 8519568 8526725 - CmaCh16G011080.1 Cma16g01108 311706

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g01108 539 PANTHER GATA TRANSCRIPTION FACTOR 26 1 539 - -
Cma16g01108 539 CDD ZnF_GATA 6 51 IPR000679 GO:0006355|GO:0043565
Cma16g01108 539 SMART GATA_3 1 55 IPR000679 GO:0006355|GO:0043565
Cma16g01108 539 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 44 - -
Cma16g01108 539 MobiDBLite consensus disorder prediction 104 143 - -
Cma16g01108 539 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Cma16g01108 539 MobiDBLite consensus disorder prediction 519 539 - -
Cma16g01108 539 Gene3D - 289 371 IPR038108 -
Cma16g01108 539 MobiDBLite consensus disorder prediction 110 143 - -
Cma16g01108 539 PANTHER OSJNBB0038F03.10 PROTEIN 1 539 IPR044589 -
Cma16g01108 539 Pfam Asx homology domain 282 368 IPR028020 -
Cma16g01108 539 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Cma16g01108 539 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 296 405 IPR044867 -
Cma16g01108 539 Gene3D - 3 84 IPR013088 GO:0006355|GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g01108 - - - csv:101205985 942.184
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g01108 Cma-Chr16:8519568 Cma08g00726 Cma-Chr8:4379535 2.09E-08 dispersed
Cma16g01108 Cma-Chr16:8519568 Cma19g00400 Cma-Chr19:4773848 0 wgd
Cma16g01108 Cma-Chr16:8519568 Cma02g01569 Cma-Chr2:8903251 0 wgd
Cma16g01108 Cma-Chr16:8519568 Cma06g00812 Cma-Chr6:4321699 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma05g00584 . 76 341 C2C2-Gata Transcription Factor Family AT5G25830 55.3 2.0e-65 246.9
Cma16g00644 . 28 305 C2C2-Gata Transcription Factor Family AT5G66320 50.8 1.3e-62 237.7
Cma03g00704 CCT,ECH 99 282 C2C2-Gata Transcription Factor Family AT5G66320 50.5 1.3e-43 174.5
Cma06g00812 . 1 489 C2C2-Gata Transcription Factor Family AT4G17570 53.8 3.9e-132 469.2
Cma16g01108 . 1 515 C2C2-Gata Transcription Factor Family AT4G17570 51.4 4.3e-131 465.7
Cma19g00400 . 1 492 C2C2-Gata Transcription Factor Family AT4G17570 51.6 2.0e-128 456.8
Cma02g01569 . 633 1129 C2C2-Gata Transcription Factor Family AT4G17570 51.6 6.1e-125 445.3
Cma06g00812 . 1 490 C2C2-Gata Transcription Factor Family AT5G47140 50.8 9.8e-114 407.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001256 2 2 1 2 3 2 5 2 2 2 2 2 4 2 1 4 2 3 4 2 2 2 2 2 2 2 2 7 3 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36595 PF13919 ASXH 6.70E-09 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g01108 Cma_Chr16 FPKM 22.658199 25.069281 11.657805 13.987044 6.380656 5.190155 5.291882 24.831127 25.874594 27.306923