Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g01108 ATGGGCAAACAAGGGCCTTGCTATCACTGTGGAGTTACAAGCACACCACTCTGGCGTAATGGACCTCCTGATAAGCCTGTATTGTGCAATGCCTGTGGATCTCGATGGAGGACGAAGGGAAATCTTACAAACTATACCCCTCTTCACGCTCGGGCGGATCCTGATGAGTGTGAGGATAAAAGGGTCTCTAAGTGGAAGAACTTGTCAATGTGTAAGAACAAAGAAGTGAAACTGCTTAAAAGAAAACAGTATCAAGATAATGGAGTTGTGGTTGGGGTTATCCCTGATCATGCTCAGAGCTTCCACAAGACAGTCGATGAAGATACGAGTTATAGATCAAGTTCGGGATCGGCCATATCAAACTCGGAGAGTTGTCAACAATTTGGTAGTGCAGATGCAAGTGATCTGACAGGCCCCTCACAGTCAACAGCGTGGGAGACGGTAGTGCCCTCGAGAAAGAGGACCTGTGTTGGTCGTTCGAAGTCTACTGCAGTTGAGAAACTCACTCAAGATCTATACACGATTTTACGTGAACAGCAGTCTTACTTCTCTGGATCTTCCGAGGAAGATTTGCTTTTTGATAGCGAAACTCCGATGGTCTCTGTAGAGATAGGACATGGAAGCGTTCTCATGAGGCATCCAAGTTTGATTGCCCGAGAAGAGGAGTCGGAAGCAAGCTCGATTTCAGTTGATAATAAACAGTTCACTCTAAATGAGGTTTATTCGGAACCCTCCATCCTTCCTGTACATTATGAAGCTGACAACAAGGTTGTAAATTTTTCCACTCTTGGAATTGGGAGAAAGCACTCTAATGGACAAGGGTTCTTGCAGGAACAAGTTAAAAGGGACAGGCCTCAATCAGAAAAAACGCAAGCACTTGGAAACCATAACTCGCTGCTCTGTAATATAGATCTAATGGACATTCTCAATTTCAGGGAGTTTACGAAGCAATTGACGAGCGAAGATCAGCAAGAATTAATGAAGTATCTTCCATCTGTTGATACTGAAGAGCTTCCCGACAGCTTGAATAGCATGTTTGAAAGCCCTGAATTCAAGGAGAATTTGAATTCTTTTAAGCAGCTGCTCACTGAAGGAGTGTTTGATTTATCCTTTCCGGGTGCGAAAAGAGAAGACTGCAGGAGTTTGAGTAGGCTCGTGTTGTGGGATTTGTCGAAATCGAAATGGGTGGAACGGTATCATTTACTCAAGACATGTAGCAGTGGAGTGGCTGTTCAAGGTTTTGCTGCTGCATCAAGTGGCTTTATGAATGGAAAGAGAGTGCTTGATGGCCAAAACAAAAAGCTTTCAGAAACCAGGACTGCAATGAAGAGTCCCAAAAGGGGGACGACAAAGACGATCGTGGAAAGCAAGGAACTCGTCGACAGCGACGGTTCTTGCTTCAGTCCAAGAAGTTTATTTGCTTTGCCTTCTGATGGAGGTTCCTTCACACTGGAATCTCTCCATTTCGATGAGGATAGTTCAGACCAGGATCTCCTATTGGATGTGAGGTCGAACAACTCCTTTCCTCAAGCCGAGCTCCTTCATCCGTCCCTGAGTTTCGGTACTCCACAGGCAAGCAATAGTAGTAGCTCGGTAAATCTTCGACTTATGCATCATTGA 1620 44.88 MGKQGPCYHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGNLTNYTPLHARADPDECEDKRVSKWKNLSMCKNKEVKLLKRKQYQDNGVVVGVIPDHAQSFHKTVDEDTSYRSSSGSAISNSESCQQFGSADASDLTGPSQSTAWETVVPSRKRTCVGRSKSTAVEKLTQDLYTILREQQSYFSGSSEEDLLFDSETPMVSVEIGHGSVLMRHPSLIAREEESEASSISVDNKQFTLNEVYSEPSILPVHYEADNKVVNFSTLGIGRKHSNGQGFLQEQVKRDRPQSEKTQALGNHNSLLCNIDLMDILNFREFTKQLTSEDQQELMKYLPSVDTEELPDSLNSMFESPEFKENLNSFKQLLTEGVFDLSFPGAKREDCRSLSRLVLWDLSKSKWVERYHLLKTCSSGVAVQGFAAASSGFMNGKRVLDGQNKKLSETRTAMKSPKRGTTKTIVESKELVDSDGSCFSPRSLFALPSDGGSFTLESLHFDEDSSDQDLLLDVRSNNSFPQAELLHPSLSFGTPQASNSSSSVNLRLMHH 539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 8519568 8526725 - CmaCh16G011080.1 Cma16g01108 311706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g01108 539 PANTHER GATA TRANSCRIPTION FACTOR 26 1 539 - -
Cma16g01108 539 CDD ZnF_GATA 6 51 IPR000679 GO:0006355|GO:0043565
Cma16g01108 539 SMART GATA_3 1 55 IPR000679 GO:0006355|GO:0043565
Cma16g01108 539 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 44 - -
Cma16g01108 539 MobiDBLite consensus disorder prediction 104 143 - -
Cma16g01108 539 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Cma16g01108 539 MobiDBLite consensus disorder prediction 519 539 - -
Cma16g01108 539 Gene3D - 289 371 IPR038108 -
Cma16g01108 539 MobiDBLite consensus disorder prediction 110 143 - -
Cma16g01108 539 PANTHER OSJNBB0038F03.10 PROTEIN 1 539 IPR044589 -
Cma16g01108 539 Pfam Asx homology domain 282 368 IPR028020 -
Cma16g01108 539 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Cma16g01108 539 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 296 405 IPR044867 -
Cma16g01108 539 Gene3D - 3 84 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g01108 Cma-Chr16:8519568 Cma08g00726 Cma-Chr8:4379535 2.09E-08 dispersed
Cma16g01108 Cma-Chr16:8519568 Cma19g00400 Cma-Chr19:4773848 0 wgd
Cma16g01108 Cma-Chr16:8519568 Cma02g01569 Cma-Chr2:8903251 0 wgd
Cma16g01108 Cma-Chr16:8519568 Cma06g00812 Cma-Chr6:4321699 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36595 PF13919 ASXH 6.70E-09 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g01108 - - csv:101205985 942.184