Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma16g01116 | ATGTACGGACAGAGTAATGGCTGTGAATCGGATTTTGTTCTTCTGGAGACCATCCGCCGCCATTTATTGGGAGATTCCGAGCCTTATCGATGTGGGAATTTCGCCGTCGCCGGAGCCGCCGCGCCGGGGTTGTGCGGGAGCTCCAATTTCACCAGCTTGTACCCTTGTTTGACTGAAAATTGGGGGGAATTGCCTCTTAAAGTGGATGATTCCGAGGACATGTTTCTCGCCGGAGTTCTTCACGACGCCGTCCACCTTGGTTGGGATCCTCTGCTCGGCTCATCGCCGTCGGACGCTTTTAATTTTGGGTTCTCTGATGTCAAAACAGAGCCCCTGATTCTTTCTCCGGCGGTGGTTCCGGCGAATGTGGAGGTGGCGGCGGCGACGATGCCGGCGGTGGTACCGGCGAAGGGGAAGCATTATCGAGGTGTACGGCAACGTCCGTGGGGGAAATTCGCGGCGGAGATTCGTGACCCGGCGAAAAACGGGGCTCGGGTTTGGCTTGGGACGTTTGAGACGGCGGAGTATGCGGCGCTTGCTTATGACCGCGCCGCTTATCGGATGCGGGGCTCTAAAGCTCTTCTTAATTTTCCGCTTCGGGTTAATTCGGGTGAACCCGACCCGGTTAGAGTGACGTCGAAGAGGTCGTCGTCTCGGTCTTCGCCGGAGCCTACTTCGTCGTTGTCGTCGGTAGAGAGTGGGACCCCTAAGCGGCGGAAGAAGGTGGTGGCAGCAACTCAAGCTGCAGTACAGTCGATCCAATTAGTGGTGGGGACCAATGCAACACAAGTGGAAGCTGACGTGGCGAAGAGTACAAATGGCGAGCAATGA | 831 | 56.68 | MYGQSNGCESDFVLLETIRRHLLGDSEPYRCGNFAVAGAAAPGLCGSSNFTSLYPCLTENWGELPLKVDDSEDMFLAGVLHDAVHLGWDPLLGSSPSDAFNFGFSDVKTEPLILSPAVVPANVEVAAATMPAVVPAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEYAALAYDRAAYRMRGSKALLNFPLRVNSGEPDPVRVTSKRSSSRSSPEPTSSLSSVESGTPKRRKKVVAATQAAVQSIQLVVGTNATQVEADVAKSTNGEQ | 276 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
16 | 8582031 | 8582861 | - | CmaCh16G011160.1 | Cma16g01116 | 311714 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma16g01116 | 276 | Pfam | AP2 domain | 140 | 190 | IPR001471 | GO:0003700|GO:0006355 | |
Cma16g01116 | 276 | Gene3D | AP2/ERF domain | 139 | 201 | IPR036955 | GO:0003700|GO:0006355 | |
Cma16g01116 | 276 | MobiDBLite | consensus disorder prediction | 205 | 242 | - | - | |
Cma16g01116 | 276 | PANTHER | DNA-BINDING DOMAIN | 34 | 257 | IPR044808 | GO:0003700|GO:0009873 | |
Cma16g01116 | 276 | SUPERFAMILY | DNA-binding domain | 140 | 200 | IPR016177 | GO:0003677 | |
Cma16g01116 | 276 | MobiDBLite | consensus disorder prediction | 209 | 233 | - | - | |
Cma16g01116 | 276 | CDD | AP2 | 139 | 198 | IPR001471 | GO:0003700|GO:0006355 | |
Cma16g01116 | 276 | ProSiteProfiles | AP2/ERF domain profile. | 140 | 198 | IPR001471 | GO:0003700|GO:0006355 | |
Cma16g01116 | 276 | PRINTS | Ethylene responsive element binding protein signature | 141 | 152 | IPR001471 | GO:0003700|GO:0006355 | |
Cma16g01116 | 276 | PRINTS | Ethylene responsive element binding protein signature | 164 | 180 | IPR001471 | GO:0003700|GO:0006355 | |
Cma16g01116 | 276 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1-RELATED | 34 | 257 | - | - | |
Cma16g01116 | 276 | SMART | rav1_2 | 140 | 204 | IPR001471 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma06g00803 | Cma-Chr6:4229848 | Cma16g01116 | Cma-Chr16:8582031 | 9.09E-139 | dispersed | |
Cma07g00206 | Cma-Chr7:957489 | Cma16g01116 | Cma-Chr16:8582031 | 1.52E-29 | dispersed | |
Cma15g01099 | Cma-Chr15:6993319 | Cma16g01116 | Cma-Chr16:8582031 | 1.50E-79 | dispersed | |
Cma16g00219 | Cma-Chr16:994595 | Cma16g01116 | Cma-Chr16:8582031 | 1.02E-49 | dispersed | |
Cma16g01116 | Cma-Chr16:8582031 | Cma16g01117 | Cma-Chr16:8592398 | 8.60E-30 | tandem | |
Cma16g01116 | Cma-Chr16:8582031 | Cma02g01565 | Cma-Chr2:8881341 | 3.85E-94 | wgd | |
Cma16g01116 | Cma-Chr16:8582031 | Cma06g00802 | Cma-Chr6:4221673 | 7.26E-30 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
36596 | PF00847 | AP2 | 1.30E-13 | CL0081 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma16g01116 | K09286 | - | csv:101203663 | 369.392 |