Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g01116 ATGTACGGACAGAGTAATGGCTGTGAATCGGATTTTGTTCTTCTGGAGACCATCCGCCGCCATTTATTGGGAGATTCCGAGCCTTATCGATGTGGGAATTTCGCCGTCGCCGGAGCCGCCGCGCCGGGGTTGTGCGGGAGCTCCAATTTCACCAGCTTGTACCCTTGTTTGACTGAAAATTGGGGGGAATTGCCTCTTAAAGTGGATGATTCCGAGGACATGTTTCTCGCCGGAGTTCTTCACGACGCCGTCCACCTTGGTTGGGATCCTCTGCTCGGCTCATCGCCGTCGGACGCTTTTAATTTTGGGTTCTCTGATGTCAAAACAGAGCCCCTGATTCTTTCTCCGGCGGTGGTTCCGGCGAATGTGGAGGTGGCGGCGGCGACGATGCCGGCGGTGGTACCGGCGAAGGGGAAGCATTATCGAGGTGTACGGCAACGTCCGTGGGGGAAATTCGCGGCGGAGATTCGTGACCCGGCGAAAAACGGGGCTCGGGTTTGGCTTGGGACGTTTGAGACGGCGGAGTATGCGGCGCTTGCTTATGACCGCGCCGCTTATCGGATGCGGGGCTCTAAAGCTCTTCTTAATTTTCCGCTTCGGGTTAATTCGGGTGAACCCGACCCGGTTAGAGTGACGTCGAAGAGGTCGTCGTCTCGGTCTTCGCCGGAGCCTACTTCGTCGTTGTCGTCGGTAGAGAGTGGGACCCCTAAGCGGCGGAAGAAGGTGGTGGCAGCAACTCAAGCTGCAGTACAGTCGATCCAATTAGTGGTGGGGACCAATGCAACACAAGTGGAAGCTGACGTGGCGAAGAGTACAAATGGCGAGCAATGA 831 56.68 MYGQSNGCESDFVLLETIRRHLLGDSEPYRCGNFAVAGAAAPGLCGSSNFTSLYPCLTENWGELPLKVDDSEDMFLAGVLHDAVHLGWDPLLGSSPSDAFNFGFSDVKTEPLILSPAVVPANVEVAAATMPAVVPAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEYAALAYDRAAYRMRGSKALLNFPLRVNSGEPDPVRVTSKRSSSRSSPEPTSSLSSVESGTPKRRKKVVAATQAAVQSIQLVVGTNATQVEADVAKSTNGEQ 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 8582031 8582861 - CmaCh16G011160.1 Cma16g01116 311714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g01116 276 Pfam AP2 domain 140 190 IPR001471 GO:0003700|GO:0006355
Cma16g01116 276 Gene3D AP2/ERF domain 139 201 IPR036955 GO:0003700|GO:0006355
Cma16g01116 276 MobiDBLite consensus disorder prediction 205 242 - -
Cma16g01116 276 PANTHER DNA-BINDING DOMAIN 34 257 IPR044808 GO:0003700|GO:0009873
Cma16g01116 276 SUPERFAMILY DNA-binding domain 140 200 IPR016177 GO:0003677
Cma16g01116 276 MobiDBLite consensus disorder prediction 209 233 - -
Cma16g01116 276 CDD AP2 139 198 IPR001471 GO:0003700|GO:0006355
Cma16g01116 276 ProSiteProfiles AP2/ERF domain profile. 140 198 IPR001471 GO:0003700|GO:0006355
Cma16g01116 276 PRINTS Ethylene responsive element binding protein signature 141 152 IPR001471 GO:0003700|GO:0006355
Cma16g01116 276 PRINTS Ethylene responsive element binding protein signature 164 180 IPR001471 GO:0003700|GO:0006355
Cma16g01116 276 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1-RELATED 34 257 - -
Cma16g01116 276 SMART rav1_2 140 204 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00803 Cma-Chr6:4229848 Cma16g01116 Cma-Chr16:8582031 9.09E-139 dispersed
Cma07g00206 Cma-Chr7:957489 Cma16g01116 Cma-Chr16:8582031 1.52E-29 dispersed
Cma15g01099 Cma-Chr15:6993319 Cma16g01116 Cma-Chr16:8582031 1.50E-79 dispersed
Cma16g00219 Cma-Chr16:994595 Cma16g01116 Cma-Chr16:8582031 1.02E-49 dispersed
Cma16g01116 Cma-Chr16:8582031 Cma16g01117 Cma-Chr16:8592398 8.60E-30 tandem
Cma16g01116 Cma-Chr16:8582031 Cma02g01565 Cma-Chr2:8881341 3.85E-94 wgd
Cma16g01116 Cma-Chr16:8582031 Cma06g00802 Cma-Chr6:4221673 7.26E-30 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36596 PF00847 AP2 1.30E-13 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g01116 K09286 - csv:101203663 369.392