Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g01120 ATGGAGTTGCAGAGAAGAGGAAAACGGATGAAGAAGGTGAAGAATCCAATCCATGGTAGCCTGTCAAACTTCAACCAAAATCTAGGCTTCCATCGAGATATCATTTTCCGGCTGCCGGTGGGTGGGGACTTCTTTGAGAATTTCATTTTTCTGTATTTCTCTGTGGAGATCTTCTCCGATTATTCCATTTCTGGGATTTGGTTTAGGAATGAATATTGCTGGTTTGTTTATGTGTTTGAGATATTATTCGATTTTATTGTAATTGATTTTAGGGGCTTTTTATTTGAGGCTATGTATATTGAGAAATTGAAGGAAGAGGAGTTGCAGAGTGGGGAAGAGGGGAATTCAGGTGTTATCGTTAGTAATTTGGAGAGCCAAAGCATTGTTAGGTCTGATGTGAAAAGGATCGTTGTTGGAGTTGGGGCTCGTGTTCTTTTCTACCCAACTTTGCTTTACAATGTTTTCAGAAATAAGCTTCAGACGGAGTTTCGATGGTGGGACAAGGTTGATGAGTTTATATTGTTAGGTGCTGTTCCATTCCCTGCGGATGTTCCCTGTTTAAAGGAGGTTGGCGTTCGAGGAGTGATAACACTAAATGAGCCATATGAGACCTTGGTTCCTTCGACTCTATATCGTGATCATGGAATTGATCATCTGACCATTCCGACTAGAGACTATTGCTTCGCACCTTTATTGAGTGACATTTGTGTTGCTGTAAATTTCATCCACAAAAATGCATCGCATGGACAGACTACTTATGTTCATTGTAAAGCTGGACGCGGGCGTAGCACAACCATTGTTATTTGCTATTTGGTGCAATACAAGCAAATGACGCCAGAAGAAGCTTATAAACATGTGAAGTCAATCAGGCCAAGGGTGCTTTTAGCACCATCACAGTGGCAGGCTGCCCTGGAATTCTACCGCCTGATTGTGCAGAAGGATGATTCCTTGTGCCACATAGATGATTTTGGAAAGAAAGTATCAGATTCAGCGCATGATCTTATTGCATTTGATGATAGTTCTGTAGTTGTTGTAAGAGAATCCGATCTTGATGGATATGACGAAAGTAGCAGCCAAAGTGAAATGGGTGATATCTGGGCAGATTTAAGTGTAGTTTGCAGGGTTCGTGTTGCTGGTCAGGCAGCCCTCACAAGATTCTCTTGTTTGTTGCTCAGCTATCGAGCAAAACACCATAGCCAGGAGATTAAAGGAGATGATCCAGGCGTCAGGAAGGGCTGTTCACTCAGTGCTACTCATTTGGAAGGGTTCAGTGTGGACATTCATGTCTATTAA 1293 42.15 MELQRRGKRMKKVKNPIHGSLSNFNQNLGFHRDIIFRLPVGGDFFENFIFLYFSVEIFSDYSISGIWFRNEYCWFVYVFEILFDFIVIDFRGFLFEAMYIEKLKEEELQSGEEGNSGVIVSNLESQSIVRSDVKRIVVGVGARVLFYPTLLYNVFRNKLQTEFRWWDKVDEFILLGAVPFPADVPCLKEVGVRGVITLNEPYETLVPSTLYRDHGIDHLTIPTRDYCFAPLLSDICVAVNFIHKNASHGQTTYVHCKAGRGRSTTIVICYLVQYKQMTPEEAYKHVKSIRPRVLLAPSQWQAALEFYRLIVQKDDSLCHIDDFGKKVSDSAHDLIAFDDSSVVVVRESDLDGYDESSSQSEMGDIWADLSVVCRVRVAGQAALTRFSCLLLSYRAKHHSQEIKGDDPGVRKGCSLSATHLEGFSVDIHVY 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 8607615 8612932 - CmaCh16G011200.1 Cma16g01120 311718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g01120 430 Gene3D Protein tyrosine phosphatase superfamily 165 314 IPR029021 -
Cma16g01120 430 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE DSP8-RELATED 98 430 - -
Cma16g01120 430 PANTHER - 98 430 - -
Cma16g01120 430 SMART dsp_5 168 309 IPR020422 GO:0006470|GO:0008138
Cma16g01120 430 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 233 301 IPR000387 GO:0016311|GO:0016791
Cma16g01120 430 ProSiteProfiles Dual specificity protein phosphatase domain profile. 165 312 IPR020422 GO:0006470|GO:0008138
Cma16g01120 430 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 159 311 IPR029021 -
Cma16g01120 430 CDD PTPMT1 165 308 IPR044596 GO:0004721
Cma16g01120 430 ProSitePatterns Tyrosine specific protein phosphatases active site. 254 264 IPR016130 GO:0016311|GO:0016791
Cma16g01120 430 Pfam Dual specificity phosphatase, catalytic domain 185 307 IPR000340 GO:0008138|GO:0016311
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g01280 Cma-Chr12:9944620 Cma16g01120 Cma-Chr16:8607615 6.95E-94 dispersed
Cma16g01120 Cma-Chr16:8607615 Cma08g01167 Cma-Chr8:7179293 7.71E-07 dispersed
Cma16g01120 Cma-Chr16:8607615 Cma06g00800 Cma-Chr6:4205467 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g01120 - - cmax:111465056 682.174