Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma16g01120 | ATGGAGTTGCAGAGAAGAGGAAAACGGATGAAGAAGGTGAAGAATCCAATCCATGGTAGCCTGTCAAACTTCAACCAAAATCTAGGCTTCCATCGAGATATCATTTTCCGGCTGCCGGTGGGTGGGGACTTCTTTGAGAATTTCATTTTTCTGTATTTCTCTGTGGAGATCTTCTCCGATTATTCCATTTCTGGGATTTGGTTTAGGAATGAATATTGCTGGTTTGTTTATGTGTTTGAGATATTATTCGATTTTATTGTAATTGATTTTAGGGGCTTTTTATTTGAGGCTATGTATATTGAGAAATTGAAGGAAGAGGAGTTGCAGAGTGGGGAAGAGGGGAATTCAGGTGTTATCGTTAGTAATTTGGAGAGCCAAAGCATTGTTAGGTCTGATGTGAAAAGGATCGTTGTTGGAGTTGGGGCTCGTGTTCTTTTCTACCCAACTTTGCTTTACAATGTTTTCAGAAATAAGCTTCAGACGGAGTTTCGATGGTGGGACAAGGTTGATGAGTTTATATTGTTAGGTGCTGTTCCATTCCCTGCGGATGTTCCCTGTTTAAAGGAGGTTGGCGTTCGAGGAGTGATAACACTAAATGAGCCATATGAGACCTTGGTTCCTTCGACTCTATATCGTGATCATGGAATTGATCATCTGACCATTCCGACTAGAGACTATTGCTTCGCACCTTTATTGAGTGACATTTGTGTTGCTGTAAATTTCATCCACAAAAATGCATCGCATGGACAGACTACTTATGTTCATTGTAAAGCTGGACGCGGGCGTAGCACAACCATTGTTATTTGCTATTTGGTGCAATACAAGCAAATGACGCCAGAAGAAGCTTATAAACATGTGAAGTCAATCAGGCCAAGGGTGCTTTTAGCACCATCACAGTGGCAGGCTGCCCTGGAATTCTACCGCCTGATTGTGCAGAAGGATGATTCCTTGTGCCACATAGATGATTTTGGAAAGAAAGTATCAGATTCAGCGCATGATCTTATTGCATTTGATGATAGTTCTGTAGTTGTTGTAAGAGAATCCGATCTTGATGGATATGACGAAAGTAGCAGCCAAAGTGAAATGGGTGATATCTGGGCAGATTTAAGTGTAGTTTGCAGGGTTCGTGTTGCTGGTCAGGCAGCCCTCACAAGATTCTCTTGTTTGTTGCTCAGCTATCGAGCAAAACACCATAGCCAGGAGATTAAAGGAGATGATCCAGGCGTCAGGAAGGGCTGTTCACTCAGTGCTACTCATTTGGAAGGGTTCAGTGTGGACATTCATGTCTATTAA | 1293 | 42.15 | MELQRRGKRMKKVKNPIHGSLSNFNQNLGFHRDIIFRLPVGGDFFENFIFLYFSVEIFSDYSISGIWFRNEYCWFVYVFEILFDFIVIDFRGFLFEAMYIEKLKEEELQSGEEGNSGVIVSNLESQSIVRSDVKRIVVGVGARVLFYPTLLYNVFRNKLQTEFRWWDKVDEFILLGAVPFPADVPCLKEVGVRGVITLNEPYETLVPSTLYRDHGIDHLTIPTRDYCFAPLLSDICVAVNFIHKNASHGQTTYVHCKAGRGRSTTIVICYLVQYKQMTPEEAYKHVKSIRPRVLLAPSQWQAALEFYRLIVQKDDSLCHIDDFGKKVSDSAHDLIAFDDSSVVVVRESDLDGYDESSSQSEMGDIWADLSVVCRVRVAGQAALTRFSCLLLSYRAKHHSQEIKGDDPGVRKGCSLSATHLEGFSVDIHVY | 430 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
16 | 8607615 | 8612932 | - | CmaCh16G011200.1 | Cma16g01120 | 311718 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma16g01120 | 430 | Gene3D | Protein tyrosine phosphatase superfamily | 165 | 314 | IPR029021 | - | |
Cma16g01120 | 430 | PANTHER | DUAL SPECIFICITY PROTEIN PHOSPHATASE DSP8-RELATED | 98 | 430 | - | - | |
Cma16g01120 | 430 | PANTHER | - | 98 | 430 | - | - | |
Cma16g01120 | 430 | SMART | dsp_5 | 168 | 309 | IPR020422 | GO:0006470|GO:0008138 | |
Cma16g01120 | 430 | ProSiteProfiles | Tyrosine specific protein phosphatases domain profile. | 233 | 301 | IPR000387 | GO:0016311|GO:0016791 | |
Cma16g01120 | 430 | ProSiteProfiles | Dual specificity protein phosphatase domain profile. | 165 | 312 | IPR020422 | GO:0006470|GO:0008138 | |
Cma16g01120 | 430 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 159 | 311 | IPR029021 | - | |
Cma16g01120 | 430 | CDD | PTPMT1 | 165 | 308 | IPR044596 | GO:0004721 | |
Cma16g01120 | 430 | ProSitePatterns | Tyrosine specific protein phosphatases active site. | 254 | 264 | IPR016130 | GO:0016311|GO:0016791 | |
Cma16g01120 | 430 | Pfam | Dual specificity phosphatase, catalytic domain | 185 | 307 | IPR000340 | GO:0008138|GO:0016311 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma12g01280 | Cma-Chr12:9944620 | Cma16g01120 | Cma-Chr16:8607615 | 6.95E-94 | dispersed | |
Cma16g01120 | Cma-Chr16:8607615 | Cma08g01167 | Cma-Chr8:7179293 | 7.71E-07 | dispersed | |
Cma16g01120 | Cma-Chr16:8607615 | Cma06g00800 | Cma-Chr6:4205467 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma16g01120 | - | - | cmax:111465056 | 682.174 |