Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g01122 ATGATGGCCGGGAAGGACGATGGGCTTGGTTTGAGCCTTGGGTTGAGCTTAGAGTCCCAACCCCACCGCCATTTGCAGCTCAATCTCATGCCGTCTTGGACTAATGATGCCTCCTCTGATCGGACTTCGGAAACTGGGCGATCGCTGCTCCGGGGTATTGATGTGAACCGGATTCCGCCGTCGATGGCGGATTGTGAGGAGGAGGCGGCGATGTCGAGTCCGAATAGTACGGTGTCGAGTGTGAGTGGGAAACGGAGTGAACGGGAAACGAACGGCGAGGATCTCGACGGCGATAGAGATTGTTTCAGAGGAATTAGCGATGAAGAAGACGGCGAAACTTCTAGAAAAAAGCTTCGGCTTACTAAAGATCAGTCCGCCGTCTTGGAAGATAGCTTCAAAGAACACAACACTCTCAATCCTAAGCAAAAGTTGGCTCTGGCGAAACAGTTAGGTCTCCGGCCGAGACAAGTTGAAGTATGGTTCCAAAACAGAAGGGCAAGGACAAAATTGAAGCAAACGGAGGTTGATTGCGAGTTTCTAAAGAGATGCTGTGAGAATCTGACGGACGAGAATAGGCGGTTGCAAAAAGAAGTACAGGAACTGAGAGCACTGAAACTTTCCCCACAATTCTACATGCACATGACCCCACCCACCACCCTTACCATGTGCCCATCATGCGAGCGTGTCGCGGTCCCAACCTCCACGTCAGCCCCCACTACAGTGACACGAGTGGGCCAAGCCCAAGCCCAGCCCCACCACGCTCGGCCCATCCACCTCAACCCGTGGGCCTCCGCCATCCCGGCCCGGCCATTCAACGCCCTACACCCTCGCTCGTAA 837 54.24 MMAGKDDGLGLSLGLSLESQPHRHLQLNLMPSWTNDASSDRTSETGRSLLRGIDVNRIPPSMADCEEEAAMSSPNSTVSSVSGKRSERETNGEDLDGDRDCFRGISDEEDGETSRKKLRLTKDQSAVLEDSFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTDENRRLQKEVQELRALKLSPQFYMHMTPPTTLTMCPSCERVAVPTSTSAPTTVTRVGQAQAQPHHARPIHLNPWASAIPARPFNALHPRS 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 8618431 8620131 - CmaCh16G011220.1 Cma16g01122 311720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g01122 278 Pfam Homeodomain 115 169 IPR001356 GO:0003677
Cma16g01122 278 MobiDBLite consensus disorder prediction 70 85 - -
Cma16g01122 278 ProSitePatterns 'Homeobox' domain signature. 146 169 IPR017970 GO:0000981|GO:0006355
Cma16g01122 278 Coils Coil 170 207 - -
Cma16g01122 278 Gene3D - 121 167 - -
Cma16g01122 278 Pfam Homeobox associated leucine zipper 171 205 IPR003106 GO:0006355|GO:0043565
Cma16g01122 278 SMART halz 171 214 IPR003106 GO:0006355|GO:0043565
Cma16g01122 278 MobiDBLite consensus disorder prediction 86 116 - -
Cma16g01122 278 MobiDBLite consensus disorder prediction 29 46 - -
Cma16g01122 278 PRINTS Lambda-repressor HTH signature 142 151 IPR000047 GO:0003677
Cma16g01122 278 PRINTS Lambda-repressor HTH signature 151 167 IPR000047 GO:0003677
Cma16g01122 278 MobiDBLite consensus disorder prediction 29 52 - -
Cma16g01122 278 PANTHER - 6 269 - -
Cma16g01122 278 ProSiteProfiles 'Homeobox' domain profile. 111 171 IPR001356 GO:0003677
Cma16g01122 278 Pfam HD-ZIP protein N terminus 2 89 IPR006712 GO:0005634
Cma16g01122 278 SUPERFAMILY Homeodomain-like 106 172 IPR009057 -
Cma16g01122 278 MobiDBLite consensus disorder prediction 67 116 - -
Cma16g01122 278 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 6 269 - -
Cma16g01122 278 CDD homeodomain 115 172 IPR001356 GO:0003677
Cma16g01122 278 SMART HOX_1 113 175 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01001 Cma-Chr6:6777916 Cma16g01122 Cma-Chr16:8618431 3.39E-98 dispersed
Cma14g00410 Cma-Chr14:1912100 Cma16g01122 Cma-Chr16:8618431 7.91E-75 dispersed
Cma14g02146 Cma-Chr14:14697711 Cma16g01122 Cma-Chr16:8618431 2.44E-99 dispersed
Cma16g01122 Cma-Chr16:8618431 Cma17g00930 Cma-Chr17:6988226 1.94E-69 dispersed
Cma16g01122 Cma-Chr16:8618431 Cma06g00798 Cma-Chr6:4195958 4.86E-149 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36598 PF04618 HD-ZIP_N 2.40E-22 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g01122 K09338 - csv:101223208 446.432