Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma16g01122 | ATGATGGCCGGGAAGGACGATGGGCTTGGTTTGAGCCTTGGGTTGAGCTTAGAGTCCCAACCCCACCGCCATTTGCAGCTCAATCTCATGCCGTCTTGGACTAATGATGCCTCCTCTGATCGGACTTCGGAAACTGGGCGATCGCTGCTCCGGGGTATTGATGTGAACCGGATTCCGCCGTCGATGGCGGATTGTGAGGAGGAGGCGGCGATGTCGAGTCCGAATAGTACGGTGTCGAGTGTGAGTGGGAAACGGAGTGAACGGGAAACGAACGGCGAGGATCTCGACGGCGATAGAGATTGTTTCAGAGGAATTAGCGATGAAGAAGACGGCGAAACTTCTAGAAAAAAGCTTCGGCTTACTAAAGATCAGTCCGCCGTCTTGGAAGATAGCTTCAAAGAACACAACACTCTCAATCCTAAGCAAAAGTTGGCTCTGGCGAAACAGTTAGGTCTCCGGCCGAGACAAGTTGAAGTATGGTTCCAAAACAGAAGGGCAAGGACAAAATTGAAGCAAACGGAGGTTGATTGCGAGTTTCTAAAGAGATGCTGTGAGAATCTGACGGACGAGAATAGGCGGTTGCAAAAAGAAGTACAGGAACTGAGAGCACTGAAACTTTCCCCACAATTCTACATGCACATGACCCCACCCACCACCCTTACCATGTGCCCATCATGCGAGCGTGTCGCGGTCCCAACCTCCACGTCAGCCCCCACTACAGTGACACGAGTGGGCCAAGCCCAAGCCCAGCCCCACCACGCTCGGCCCATCCACCTCAACCCGTGGGCCTCCGCCATCCCGGCCCGGCCATTCAACGCCCTACACCCTCGCTCGTAA | 837 | 54.24 | MMAGKDDGLGLSLGLSLESQPHRHLQLNLMPSWTNDASSDRTSETGRSLLRGIDVNRIPPSMADCEEEAAMSSPNSTVSSVSGKRSERETNGEDLDGDRDCFRGISDEEDGETSRKKLRLTKDQSAVLEDSFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTDENRRLQKEVQELRALKLSPQFYMHMTPPTTLTMCPSCERVAVPTSTSAPTTVTRVGQAQAQPHHARPIHLNPWASAIPARPFNALHPRS | 278 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
16 | 8618431 | 8620131 | - | CmaCh16G011220.1 | Cma16g01122 | 311720 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma16g01122 | 278 | Pfam | Homeodomain | 115 | 169 | IPR001356 | GO:0003677 | |
Cma16g01122 | 278 | MobiDBLite | consensus disorder prediction | 70 | 85 | - | - | |
Cma16g01122 | 278 | ProSitePatterns | 'Homeobox' domain signature. | 146 | 169 | IPR017970 | GO:0000981|GO:0006355 | |
Cma16g01122 | 278 | Coils | Coil | 170 | 207 | - | - | |
Cma16g01122 | 278 | Gene3D | - | 121 | 167 | - | - | |
Cma16g01122 | 278 | Pfam | Homeobox associated leucine zipper | 171 | 205 | IPR003106 | GO:0006355|GO:0043565 | |
Cma16g01122 | 278 | SMART | halz | 171 | 214 | IPR003106 | GO:0006355|GO:0043565 | |
Cma16g01122 | 278 | MobiDBLite | consensus disorder prediction | 86 | 116 | - | - | |
Cma16g01122 | 278 | MobiDBLite | consensus disorder prediction | 29 | 46 | - | - | |
Cma16g01122 | 278 | PRINTS | Lambda-repressor HTH signature | 142 | 151 | IPR000047 | GO:0003677 | |
Cma16g01122 | 278 | PRINTS | Lambda-repressor HTH signature | 151 | 167 | IPR000047 | GO:0003677 | |
Cma16g01122 | 278 | MobiDBLite | consensus disorder prediction | 29 | 52 | - | - | |
Cma16g01122 | 278 | PANTHER | - | 6 | 269 | - | - | |
Cma16g01122 | 278 | ProSiteProfiles | 'Homeobox' domain profile. | 111 | 171 | IPR001356 | GO:0003677 | |
Cma16g01122 | 278 | Pfam | HD-ZIP protein N terminus | 2 | 89 | IPR006712 | GO:0005634 | |
Cma16g01122 | 278 | SUPERFAMILY | Homeodomain-like | 106 | 172 | IPR009057 | - | |
Cma16g01122 | 278 | MobiDBLite | consensus disorder prediction | 67 | 116 | - | - | |
Cma16g01122 | 278 | PANTHER | HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN | 6 | 269 | - | - | |
Cma16g01122 | 278 | CDD | homeodomain | 115 | 172 | IPR001356 | GO:0003677 | |
Cma16g01122 | 278 | SMART | HOX_1 | 113 | 175 | IPR001356 | GO:0003677 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma06g01001 | Cma-Chr6:6777916 | Cma16g01122 | Cma-Chr16:8618431 | 3.39E-98 | dispersed | |
Cma14g00410 | Cma-Chr14:1912100 | Cma16g01122 | Cma-Chr16:8618431 | 7.91E-75 | dispersed | |
Cma14g02146 | Cma-Chr14:14697711 | Cma16g01122 | Cma-Chr16:8618431 | 2.44E-99 | dispersed | |
Cma16g01122 | Cma-Chr16:8618431 | Cma17g00930 | Cma-Chr17:6988226 | 1.94E-69 | dispersed | |
Cma16g01122 | Cma-Chr16:8618431 | Cma06g00798 | Cma-Chr6:4195958 | 4.86E-149 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
36598 | PF04618 | HD-ZIP_N | 2.40E-22 | No_clan | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma16g01122 | K09338 | - | csv:101223208 | 446.432 |