Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g01136 ATGGCCGACCATCCTGATGATTTACACGAACTTCTTGATAGTGCTTTGGACGATTTTCAGAAATTCGACCTTAGTCCTTCCGTTTCGAGAAGTGGAGATGGGGCGGAGAGTAGGGCGGTTCTTCCTTCTGGGGTTCAAGGTTTAGGGATGGGTTTGCCTGACCTAAGGAGCAAGAAAAAAGGGAAGCAAAAAGTTTCGAAGGAATCGCATGTCTCTGAGGCTCTTGATAAGCTCAGAGAACAGACCAGGGAGGCTGTCAAGGGGCTTGAATCAGTGACTGGTCCTAAACCTGGTGTTGAAGATTTTGGTAAAGATGCTTTGATGGAAGATTGGGTGAAGCAGTTCGAGGAGATGGCTGGCTCTCAGGACATGGAATCCATTGTTGAGACCATGATGCAACAACTTTTATCCAAAGAGATCCTCCATGAACCAATGAAAGAAATAGGAGAAAGATATCCCAAGTGGTTGGAGGAGCATAAAGCAAGTTTGAGCAAAGAAGAATACGAACGCTACTCTCAGCAATACGTACTGATAAAAGATCTCAACATCGTGTACGAACGTGAACCCGACAACTTCAGTAAAATCGTTGAGCTCATGCAGAAAATGCAAGAATGTGGTCAGCCACCAAATGATATCGTGCAAGAACTGGCACCTGATTTCGACTTAACAAATCTTGCACAACTATCTCCAGAGATGTTGGAGTCTCAGGCAAATTGTTGTATAATGTGA 729 44.44 MADHPDDLHELLDSALDDFQKFDLSPSVSRSGDGAESRAVLPSGVQGLGMGLPDLRSKKKGKQKVSKESHVSEALDKLREQTREAVKGLESVTGPKPGVEDFGKDALMEDWVKQFEEMAGSQDMESIVETMMQQLLSKEILHEPMKEIGERYPKWLEEHKASLSKEEYERYSQQYVLIKDLNIVYEREPDNFSKIVELMQKMQECGQPPNDIVQELAPDFDLTNLAQLSPEMLESQANCCIM 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 8732748 8737520 + CmaCh16G011360.1 Cma16g01136 311734

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g01136 242 Pfam Pex19 protein family 59 241 IPR006708 GO:0005777
Cma16g01136 242 PANTHER PEROXISOME BIOGENESIS PROTEIN 19-1 2 242 - -
Cma16g01136 242 MobiDBLite consensus disorder prediction 55 72 - -
Cma16g01136 242 Gene3D Pex19, mPTS binding domain 112 225 IPR038322 -
Cma16g01136 242 MobiDBLite consensus disorder prediction 23 72 - -
Cma16g01136 242 PANTHER PEROXISOMAL BIOGENESIS FACTOR 19 2 242 IPR006708 GO:0005777
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g01136 K13337 PEX19; peroxin-19 - csv:101220303 449.129
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g00783 Cma16g01136 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g01136 Cma-Chr16:8732748 Cma06g00783 Cma-Chr6:4070163 5.31E-148 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g540 . Blo03g00158 Bda06g00025 . . Bpe07g00180 . . Cmo06g00803 Cmo16g01188 . . . . Sed02g0092 Cpe14g00941 . Bhi11g00189 Tan01g2034 Cmetu06g1649 . . Mch10g1568 . Cla10g00254 Cam10g0259 Cec10g0267 Cco10g0265 Clacu10g0261 Cmu10g1104 Cre10g0512 . . Cone6ag0668 . Lsi07g01298 . . Cme06g02568 Blo03g00423 . Bda07g00037 . . Bpe11g00272 . . . . . Cma06g00783 Cma16g01136 Car06g00697 Car16g01071 Cpe08g00740 . . . . . . . . . . . . . . . . Csa03g00272 Chy06g02050 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009122 1 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 2 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g01136 Cma_Chr16 FPKM 22.658682 22.553314 24.761721 30.394674 20.974207 22.965845 20.122395 33.32375 36.108894 35.281185