Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g01140 ATGGCTTCCCCTGTTTTCCTCTTCCTCCTCTGTTTTCTCCTTCCTTCCCCTGTTTTCTCCTCACAGATTCTGCTCTTACCTCTCTCTAATTCCTTATCATCCTCATCCGATTTCAACAACACCCACAACCTCCTCAAATCCACCGCCGCACGCTCTTCCGCCCGCTTCCACCACCGCCGCCGTACCCACCACCGCAGCCACCTCTCTCTGCCCCTCTCCCCCGGCGGCGATTATACTCTCTCCTTCAACCTCGGTTCCGAGTCTCAAAAGATTTCCCTCTATATGGACACTGGAAGCGACCTTGTTTGGTTCCCCTGTTCCCCATTTGAATGTATTCTCTGTGAAGGCAAACCCAAAATTCAATCCCCTTTGCCCAAAATCTCAAATCAAAAATCAGTTTCCTGCAGCGCCGCCGCATGCTCCGCCGCCCACGGTGGCTCCCTCTCCGCCTCCCACCTCTGTGCAATTTCCCGATGTCCACTTGAATCCATTGAAGTTTCTGAGTGCTCTTCTTTTTCTTGTCCGCCGTTTTATTATGCTTATGGCGATGGGAGTTTAATTGGTCGGCTTTATAGAGATAGCCTCAGTTTGCCGGCGCCGGCACCGTCACCGGCGATCAATGTTCGGAATTTTACTTTTGGGTGTGCCCACTCAGCGTTAGGTGAGCCAATCGGTGTCGCCGGATTCGGCCGAGGGTTGTTGTCGATGCCGATTCAACTCGCCACTTTCTCTCCCCAACTCGGGAACCGGTTTTCTTATTGTTTGGTTTCTCACTCGTTTGCGGCGGACCGAGTTCGCCGCCCGAGTCCGCTGATTCTCGGCCGGTACTACGGCAGCGAGACGGAGTTTATTTACACTTCCATGCTTGAGAATCCAAAGCATCCTTATTTTTACTCGGTTGGGTTGGCCGGAATTTCAGTTGGGTCGGTGATGATTCCGGCGCCGGAGTTTTTGAAAAAGGTGGATGAGGGTGGCAGCGGCGGCGTTGTGGTGGATTCCGGTACTACTTTTACTATGTTGCCAGCAGGTTTGTATAACTCGGTGGTGGCCCAGTTTGAGAACCGGACCGGGCGAGTTGCGAGCCGGGCGAGTCAGATTGAAGAAAACACCGGATTGAGCCCTTGCTATTACTACGAGAAATCAGTGGAAGTGCCACGTGTCGTGTTACACTTCGTTGGGGAAAAATCCAGTGTGATGCTTCCTAGAAAAAATTATTTCTATGAGTTCTTGGACGGCGGAGATGGGGTGGGGAGAAAGATAAAAGTCGGGTGTTTAATGCTGATGAACGGTGGGGATGAGGCTGAACTGGCAGGTGGGCCCGGTGCCACGCTTGGGAACTACCAACAACAGGGTTTTGAGGTGGCATATGATTTGGAAAACAATCGGGTCGGGTTCGCCCGGCGGCAGTGTTCAACCCTTTGGGACAGCTTGAACCGCAGTTAA 1443 52.53 MASPVFLFLLCFLLPSPVFSSQILLLPLSNSLSSSSDFNNTHNLLKSTAARSSARFHHRRRTHHRSHLSLPLSPGGDYTLSFNLGSESQKISLYMDTGSDLVWFPCSPFECILCEGKPKIQSPLPKISNQKSVSCSAAACSAAHGGSLSASHLCAISRCPLESIEVSECSSFSCPPFYYAYGDGSLIGRLYRDSLSLPAPAPSPAINVRNFTFGCAHSALGEPIGVAGFGRGLLSMPIQLATFSPQLGNRFSYCLVSHSFAADRVRRPSPLILGRYYGSETEFIYTSMLENPKHPYFYSVGLAGISVGSVMIPAPEFLKKVDEGGSGGVVVDSGTTFTMLPAGLYNSVVAQFENRTGRVASRASQIEENTGLSPCYYYEKSVEVPRVVLHFVGEKSSVMLPRKNYFYEFLDGGDGVGRKIKVGCLMLMNGGDEAELAGGPGATLGNYQQQGFEVAYDLENNRVGFARRQCSTLWDSLNRS 480
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 8762211 8763653 + CmaCh16G011400.1 Cma16g01140 311738

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g01140 480 SUPERFAMILY Acid proteases 73 475 IPR021109 -
Cma16g01140 480 Pfam Xylanase inhibitor C-terminal 298 466 IPR032799 -
Cma16g01140 480 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 329 340 IPR001969 GO:0004190|GO:0006508
Cma16g01140 480 Gene3D Acid Proteases 273 476 IPR021109 -
Cma16g01140 480 PANTHER OS07G0603500 PROTEIN-RELATED 1 475 - -
Cma16g01140 480 Pfam Xylanase inhibitor N-terminal 78 258 IPR032861 -
Cma16g01140 480 PANTHER BNAA01G17170D PROTEIN 1 475 - -
Cma16g01140 480 Gene3D Acid Proteases 57 263 IPR021109 -
Cma16g01140 480 ProSiteProfiles Peptidase family A1 domain profile. 78 466 IPR033121 -
Cma16g01140 480 CDD pepsin_A_like_plant 78 470 IPR034161 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g01140 - - - cmos:111431201 832.017
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00442 Cma-Chr13:4958573 Cma16g01140 Cma-Chr16:8762211 2.28E-61 dispersed
Cma14g00348 Cma-Chr14:1538029 Cma16g01140 Cma-Chr16:8762211 1.53E-45 dispersed
Cma16g01140 Cma-Chr16:8762211 Cma15g01415 Cma-Chr15:8935263 1.69E-39 dispersed
Cma16g01140 Cma-Chr16:8762211 Cma06g00511 Cma-Chr6:2397101 9.54E-53 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g535 Blo02g01043 Blo03g00160 Bda06g00028 Bda08g00578 Bpe05g00581 Bpe07g00178 . . . Cmo16g01192 . . . . Sed04g1715 Cpe14g00944 . Bhi11g00193 Tan01g2028 Cmetu06g1269 . . Mch10g1562 . Cla10g00257 Cam10g0263 Cec10g0271 Cco10g0269 Clacu10g0265 Cmu10g1108 Cre10g0516 Cone8ag0396 . Cone6ag0672 Cone9ag0679 Lsi07g01302 . . Cme06g02571 . . . . . . . Bma12g00644 . . . . Cma16g01140 . Car16g01075 . . . . . . . . . . . . . . . . . Csa03g00275 Chy06g02047 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010679 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 0 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g01140 Cma_Chr16 FPKM 10.361053 12.580335 2.899691 5.35682 4.075654 2.439423 4.059206 1.722801 1.752616 1.541851