Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g01142 ATGGCTTCTTCGATCGCTCTCCGAAGGCTCGCTGCTAACTCCGCCGCTAAGCTCTTCAATCCTGTTCGCTCAGCTTCTGTTCTCCCATCTGTCGGTCGTTCGTTCAACACTAATGCTCAGATGACCAGCTACAATGACGACGAACGCTCTGTTGATGTGGACCGCCGCTCTGACCGCTCTCTCTCTCGTTCTTATGATCGCTTTCCTGGTTTCGCAGACGTGTTCGATCCGTTTTCTCCGACACGAAGCCTAAGTCAGGTTCTGAATCTGATGGATCAGTTCATGGAAGATCCATTACTGGCAGCTTCACGAGGAGTAGGAGCAGGATCCAGGAGGGGATGGGACGTGAGAGAAGACGACGACGCTCTGTACCTGCGAATGGACATGCCTGGGCTGAGCAAAGAAGATGTGAAGGTGAGTGTGGAGCAGAACACTCTTATTATCAAAGGTGAGGCTGCGAAAGAATCCGAGGACGAATCTGATCGGAGACGATTCTCGAGCCGACTAGATTTGCCTGCTAACCTCTATGAACTGGATTCAATCAAAGCAGAGATGAAAAATGGAGTTCTGAAAGTAGCTGTGCCAAAGGTGAAAGAAGAAGAGAGGAAGGATGTGAAGCAAATTACTGTTTCGTAG 636 49.84 MASSIALRRLAANSAAKLFNPVRSASVLPSVGRSFNTNAQMTSYNDDERSVDVDRRSDRSLSRSYDRFPGFADVFDPFSPTRSLSQVLNLMDQFMEDPLLAASRGVGAGSRRGWDVREDDDALYLRMDMPGLSKEDVKVSVEQNTLIIKGEAAKESEDESDRRRFSSRLDLPANLYELDSIKAEMKNGVLKVAVPKVKEEERKDVKQITVS 211
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 8775057 8777013 + CmaCh16G011420.1 Cma16g01142 311740

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g01142 211 Gene3D - 70 211 IPR008978 -
Cma16g01142 211 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 105 211 IPR002068 -
Cma16g01142 211 CDD ACD_sHsps-like 115 196 - -
Cma16g01142 211 PANTHER 23.5 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 1 210 IPR044656 -
Cma16g01142 211 PANTHER HEAT SHOCK 22 KDA PROTEIN, MITOCHONDRIAL-LIKE 1 210 - -
Cma16g01142 211 Pfam Hsp20/alpha crystallin family 115 211 IPR002068 -
Cma16g01142 211 SUPERFAMILY HSP20-like chaperones 81 204 IPR008978 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g01142 K13993 HSP20; HSP20 family protein - csv:101219106 323.939
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g01142 Cma-Chr16:8775057 Cma19g00576 Cma-Chr19:6446927 6.53E-15 dispersed
Cma14g01347 Cma-Chr14:10487066 Cma16g01142 Cma-Chr16:8775057 6.37E-15 transposed
Cma15g00997 Cma-Chr15:6038566 Cma16g01142 Cma-Chr16:8775057 2.25E-24 transposed
Cma16g01142 Cma-Chr16:8775057 Cma06g00780 Cma-Chr6:4043747 1.68E-126 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g532 Blo02g01045 Blo03g00162 . . Bpe05g00583 . . . . . . . . . . Cpe14g00946 . Bhi11g00197 . . . . . . Cla10g00259 Cam10g0265 Cec10g0273 Cco10g0271 Clacu10g0267 Cmu10g1110 Cre10g0518 Cone8ag0395 Cone12ag0380 . . . . . Cme06g02575 . . . . . . . Bma12g00642 . . . . Cma16g01142 . Car16g01081 . . . . . . . . . . . . . . . . . Csa03g00278 Chy06g02044 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002899 1 4 2 2 1 2 3 2 2 2 2 2 2 2 2 1 2 2 2 2 2 1 1 1 1 1 1 2 1 3 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g01142 Cma_Chr16 FPKM 22.651461 25.924784 59.075115 57.117535 34.228802 36.071434 33.293068 649.877136 735.736389 666.568176