Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g01144 ATGAGGGGGATTTCCTTTCATTTTCAGGGGAAGGGGGACTTGGAAATTTCAGCCGCGTTATCTTCTTCTCCGATTTGCTCTGGTTTTGCAGAAAAGTGGGTTAAAAAGGGGGAAGAACACCAAGAACTCGAAGAACAACAAGAAGGGTTTTCTTATTTTCTTTTACCCAACAACGAACCCACTTCCGTTCTTCATATGAGAAGCCCCAGTCCTCCCACATCGGTTTCCACTCTCTCTTCTTCCTTTGGCGGTGGCGGTGGCGGTGGCGGTGGTTGTGTTCCTTCACTTCCTCCGGAGACCCCTTCTGTTGAGCCGCTCGCCGGAGCTGGTGTTGGGAACGCCATTTTTTCTAGTGGATTGGAAGATTTGGAGAGTATGTGGTCGGAAACTGCCGGCCCTGAACAGTCGTTTCTCCGATGGATCGCCGGGGATGTTGAAGATTCCAGTATGGGGAGTAAAAACCCCTTTGATTTCGATGGCAATGCCGGTATCGGAATTGTCGAACAGGGTTCTGAATTTGGCCGCGGAGCTGGTAATGTTCTTGCTAACATTAATCCTAATTTATCGTTTCCTGTTCCTGCTTGTGGGGGGGCTAATTACAAGAGTTCTAGTTTGGGGATGAACAATCGCCATGGGAATTTGAATCTTCAGAGCCCTATCTTTAATGGGTCTCTTGAAAATGTTGTTGTTCCTGTTTCTGGTTTGATTCAGCCATTTGAGCGCCCTGATGAGAAGCCCCAGAGTTTGAATGCTGCTCAGGTTTTGTTGAACCAGCACCAGCACCAGCACCCTCAGAATCCTAGCTTCTTTGTGCCATTGATGTTTGGTCAACAAGAACAGCAGCTCCAGCCTCAGCTGAAGAGGCATAATTCGAGCGGAGCACTCGACGCGAATCCCAACGGGCCGATACCGATACCGAATGAGATTTTGATGAGGAATCATCAGGTGCAGGTGTTGCAGCAGCAGCAGCTTGGTTATGCACCTGGTTTGCAGTGTCTTCCTCAGCAGAAGGCAATGTCCCCGAAGCCGAAAGTTGTAGGGCTTGGCGACGAAATGGCGTATAACAATCCCCCACAGCAACAGCAACATGCTTTGCTCGACCAGCTCTACAAGGCGGCGGAGCTGGTCGGGACTGGGAACTTCTCACACGCGCAAGGGATATTGGCGCGGCTCAATCACCAGCTCTCACCTGTTGGAAAGCCCCTTCAAAGGGCTGCTTTCTACTTCAAGGAGGCTCTTCAATTGCTCCTCCTTATGAACAACCCGGTTAATCCTCCTCCACCTCGCTGCCCTACACCGGTCGATGTGATCTTCAAGATGGGTGCTTACAAGGTGTTTTCCGAAATCTCCCCACTTGTTCAGTTTGTGAATTTCACCTGCAATCAGGCACTGCTCGAGGCTCTCGACGACGTTGGTCGAATTCACATTGTAGATTTTGATATTGGTTTTGGAGCACAATGGGCTTCTTTTATGCAGGAACTGTCCTTGAGGAACCAGGGTGCATCACTCAAAATTACTGCTTTTGCCTCTCCCTCGACTCATCATCCGATCGAACTCGGGCTAATGCGCGAAAATCTCACTCAATTTGCTAATGACATTGGGATAAGTTTCGAGTTCGATATGATCAACTTCGATTCCTTGAACCAGAACTCCTTTTCGTTGCCATTTTCTCGAGCAAACGAAAACGAGGCTATTGCAGTAAACTTCCCTCTATGTTCGACATCGAATCAACCAGCATTGCTTCCATCTCTCCTCCGTTTCATCAAACAACTCTCACCGAAACTTGTTGTTTCACTTGACCGAGGGTGCGATCGAAGTGACCTCCCATTTCCTCAGCATATGCTTCAGGCACTTCAGTCCTACATTAACCTCCTGGAATCTCTGGATGCTATTAATATGAACTCGGACGCTGTGAACAAGATCGAGAGGTTTCTTTTGCAACCGAGAATCGAAAGCACTGTTCTGGGGCGGCTTCGAGCGCCTGAAAGAATGCCCCTTTGGAAAACACTCTTTGCCTCTGCTGGCTTTACACCAGTAAACTTCAGCAACTTCACTGAAACTCAAGCAGAATGTGTAGCAAAGAGAACTTCTGTGAGGGGATTTCACGTCGAGAAACGCCAGGCTTCCCTAGTTTTATGCTGGCAGCGTCGGGAGCTCATCTCCGCTTCGGCCTGGAGATGTTGA 2184 48.95 MRGISFHFQGKGDLEISAALSSSPICSGFAEKWVKKGEEHQELEEQQEGFSYFLLPNNEPTSVLHMRSPSPPTSVSTLSSSFGGGGGGGGGCVPSLPPETPSVEPLAGAGVGNAIFSSGLEDLESMWSETAGPEQSFLRWIAGDVEDSSMGSKNPFDFDGNAGIGIVEQGSEFGRGAGNVLANINPNLSFPVPACGGANYKSSSLGMNNRHGNLNLQSPIFNGSLENVVVPVSGLIQPFERPDEKPQSLNAAQVLLNQHQHQHPQNPSFFVPLMFGQQEQQLQPQLKRHNSSGALDANPNGPIPIPNEILMRNHQVQVLQQQQLGYAPGLQCLPQQKAMSPKPKVVGLGDEMAYNNPPQQQQHALLDQLYKAAELVGTGNFSHAQGILARLNHQLSPVGKPLQRAAFYFKEALQLLLLMNNPVNPPPPRCPTPVDVIFKMGAYKVFSEISPLVQFVNFTCNQALLEALDDVGRIHIVDFDIGFGAQWASFMQELSLRNQGASLKITAFASPSTHHPIELGLMRENLTQFANDIGISFEFDMINFDSLNQNSFSLPFSRANENEAIAVNFPLCSTSNQPALLPSLLRFIKQLSPKLVVSLDRGCDRSDLPFPQHMLQALQSYINLLESLDAINMNSDAVNKIERFLLQPRIESTVLGRLRAPERMPLWKTLFASAGFTPVNFSNFTETQAECVAKRTSVRGFHVEKRQASLVLCWQRRELISASAWRC 727
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 8784996 8787179 - CmaCh16G011440.1 Cma16g01144 311742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g01144 727 ProSiteProfiles GRAS family profile. 356 726 IPR005202 -
Cma16g01144 727 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 36 726 IPR005202 -
Cma16g01144 727 MobiDBLite consensus disorder prediction 65 83 - -
Cma16g01144 727 PANTHER SCARECROW-LIKE PROTEIN 6 36 726 - -
Cma16g01144 727 MobiDBLite consensus disorder prediction 65 100 - -
Cma16g01144 727 Pfam GRAS domain family 366 726 IPR005202 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g00779 Cma16g01144 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00774 Cma-Chr4:3941102 Cma16g01144 Cma-Chr16:8784996 6.43E-70 dispersed
Cma08g00863 Cma-Chr8:5297563 Cma16g01144 Cma-Chr16:8784996 5.19E-162 dispersed
Cma16g00649 Cma-Chr16:3374122 Cma16g01144 Cma-Chr16:8784996 2.99E-70 dispersed
Cma16g01144 Cma-Chr16:8784996 Cma17g00480 Cma-Chr17:2969066 1.01E-146 dispersed
Cma16g01144 Cma-Chr16:8784996 Cma06g00779 Cma-Chr6:4039432 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36602 PF03514 GRAS 6.80E-92 CL0063 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g01144 - - csv:101218630 1144.03