Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g01147 ATGGGTTGCACGGTGAGAGATAAGCATGTTCGTACGAATCGGAGGCCTCGATCGGTAAAACCCGAATTCGATCCGTGTTGTCACCAAGAACGAGCTTCACTTCCCAAATCTGTACTTGAATCGGGTTCCAAGCCGTTGGATTATCATATAGGGCTTGACGATTCGAACCAGGATAACGCTGTTACCTCAAACTGTAATTCCGGTTCCAGCTTGGATGATCTTGGATGGGGTTACTGTACGGAGGAGCAATTGGAGGAAATTTTGATGAAGAATTTGCAATTTGTTTATACTGAAGCTATTTCTAAGCTTGTTGCATTGGGTTATGATGAGGATGCTGCGATGAGGGCGATTTTGCAAAATGGGCATTGCTATGGTACCATGGATGTTCTAACAAATGTGCTGCATAATTCGCTGTCGTTTTTGAATGGTAACAACAACTCTGATAGTGCTAGCAGCGAGGCTGTTGCAGCTGCTTCTGCTGCTGCCGCTGCCGCTGCTGCGGCCGCTTCTGCTGATGGTGTTGGTATTGGACCCATCGGTAATGGTAATGGTATTGCTATTGATAATGTTAATGCTAATTTGGTTGTGGATGATCCTGAGCCTGCGTTCTCTGATATAAGGCAATTGCAGGAGTATTCTTTGGCTGGTATGGTATGTTTGTTGCAACAAGTTAGGCCACAGTTGACTAAAGGAGATGCTATGTGGTGTTTGCTTATGAGTGATCTTCATGTCGGTCGGGCAAGCACCATGGAAATTCCGGTGCTTCCTTCAGCACCAAGTAATGTTAATGGTGACGCATCTGGTGGCAATGGTGAGAATGTTAGTAACCAACCAGTGGGATTTTTGGAACCATCTCTTTGTAAATTTCATGGTGGTTCAGGTTTTGGAAACAGTGGAGGTTCTGAATTCTCTGCTAATGGTTTTCTGTCTTATTCTCCTGATATGGATTTACATAGAGATATTGAGTGTCCAAAGAGGTTTAATCTTTCTCCTTCAATGAAGTCGTTGTTGAAGAGGAATGTGGCTGCATTTGCTGCTGGTTTTCGAGCAAACTCGAAACACCTTACAGCACAGACTCAAGCTTGTGCAACTGTCTTGCCAAGTGAAATTCCCCCTGTCGTACAAGGTGCTTCGGTAGTTCCAGTGGAGAAAAGTGAGGAGTCCCAGATTCCAAAGAACCAAGATGCTGTAAATTCAATGTTGAATAAATTTCGCGATTTGAAGATTTATGAGAATTTGGATTTTGTGGCAGACGATAAAAAGGATGAAGTGATTGTAAATCTCTTGCATCAGATTAAAGAGCTTGAGAGACAAGTGAAGGAGCGGAAAGATTGGGCGCATCAAAAGGCAATGCAAGCTGCTAGGAAACTGAGTCATGATCTCACGGAGCTTAAAACGTTGAGGATAGAAAGGGAAGAGACCCAACGCATGAAAAATGGCAAACCGACTTTGGAGGACACAACAATGAAACGGCTATCTGAGATGGAGAATGCGTTGAGAAAGGCCAGTGGTCAGGTGGACCGTGCAAATTCAACAGTACGACGACTTGAGACAGAAAATGCAGAAATTAGAGCAGAGATGGAAGCTTTAAAGTTAAGTGCCTCCGAGTCTGTCACAACTTGTTTGGAGGTTGCAAAGAGGGAGAAAAAAAGCTTAAAGAGACTATTGGCCTGGGAAAAGCAAAAAACAAAATTACAGGAGCAGATTGCAGAGGAGAAGGATAAGATTTCAAGGTTGCAAGATGAAATGGAGATGATCAAGGTAGCTCAAAAAGAGGCTGAGGCTAGGTGGAGGCAGGAGTTGAATGCTAAGGAAGCTGCCATGGCACAAGTGGAAGACGAAAGACTTCGTAAAGAGGCAGCAGAGGCGAGTAGTAAAAGAAAGCTCGAGGCATTACGACTTAAGATAGAGATAGATTTCCAGCGCCACAAGGATGATCTCCAAAGGCTTGAACAAGAACTTTTGCGTCTAAAGGCATCTGCACAATCTATTGACTCACACCAACCCTCCAGTAACACACCTAGAGGGAATTCCGAGGGCGTAAAACCCCAGGGAGAAACAATCGCGAAAATGCTTCGGGAATTAGATAGCTATGAGGAATCAACGGAGGAAGGCGTCAACCACGACCGCGAATGCATGATATGTATGAGAGGTGAGGTCTCCATTGTTTTCTTACCTTGCGCTCACCAAGTTCTGTGTGCGAGTTGCAGTGATAGTTACGGGAAAAAGGGTAAAGCAGCATGCCCGTGTTGTCGGGTTCCGATAGAACAGAGAATCCGAGTTTTTGGTGCGAGTTCATAG 2301 44.63 MGCTVRDKHVRTNRRPRSVKPEFDPCCHQERASLPKSVLESGSKPLDYHIGLDDSNQDNAVTSNCNSGSSLDDLGWGYCTEEQLEEILMKNLQFVYTEAISKLVALGYDEDAAMRAILQNGHCYGTMDVLTNVLHNSLSFLNGNNNSDSASSEAVAAASAAAAAAAAAASADGVGIGPIGNGNGIAIDNVNANLVVDDPEPAFSDIRQLQEYSLAGMVCLLQQVRPQLTKGDAMWCLLMSDLHVGRASTMEIPVLPSAPSNVNGDASGGNGENVSNQPVGFLEPSLCKFHGGSGFGNSGGSEFSANGFLSYSPDMDLHRDIECPKRFNLSPSMKSLLKRNVAAFAAGFRANSKHLTAQTQACATVLPSEIPPVVQGASVVPVEKSEESQIPKNQDAVNSMLNKFRDLKIYENLDFVADDKKDEVIVNLLHQIKELERQVKERKDWAHQKAMQAARKLSHDLTELKTLRIEREETQRMKNGKPTLEDTTMKRLSEMENALRKASGQVDRANSTVRRLETENAEIRAEMEALKLSASESVTTCLEVAKREKKSLKRLLAWEKQKTKLQEQIAEEKDKISRLQDEMEMIKVAQKEAEARWRQELNAKEAAMAQVEDERLRKEAAEASSKRKLEALRLKIEIDFQRHKDDLQRLEQELLRLKASAQSIDSHQPSSNTPRGNSEGVKPQGETIAKMLRELDSYEESTEEGVNHDRECMICMRGEVSIVFLPCAHQVLCASCSDSYGKKGKAACPCCRVPIEQRIRVFGASS 766
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 8819354 8823871 - CmaCh16G011470.1 Cma16g01147 311745

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g01147 766 SUPERFAMILY RING/U-box 706 758 - -
Cma16g01147 766 ProSiteProfiles Zinc finger RING-type profile. 712 752 IPR001841 -
Cma16g01147 766 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 765 - -
Cma16g01147 766 Pfam Family of unknown function (DUF6592) 91 248 IPR046527 -
Cma16g01147 766 MobiDBLite consensus disorder prediction 661 680 - -
Cma16g01147 766 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 696 763 IPR013083 -
Cma16g01147 766 Coils Coil 542 624 - -
Cma16g01147 766 PANTHER OS05G0141500 PROTEIN 1 765 IPR046934 -
Cma16g01147 766 Coils Coil 492 533 - -
Cma16g01147 766 MobiDBLite consensus disorder prediction 1 22 - -
Cma16g01147 766 MobiDBLite consensus disorder prediction 661 684 - -
Cma16g01147 766 Pfam Zinc finger, C3HC4 type (RING finger) 709 757 - -
Cma16g01147 766 Coils Coil 633 667 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g01147 - - - csv:101203508 1223.38
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma02g01509 Cma16g01147 CCT
Cma15g01171 Cma16g01147 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00848 Cma-Chr6:4712010 Cma16g01147 Cma-Chr16:8819354 0 dispersed
Cma06g01447 Cma-Chr6:9269337 Cma16g01147 Cma-Chr16:8819354 3.67E-25 dispersed
Cma10g00248 Cma-Chr10:1102128 Cma16g01147 Cma-Chr16:8819354 1.26E-10 dispersed
Cma11g00257 Cma-Chr11:1304803 Cma16g01147 Cma-Chr16:8819354 9.54E-09 dispersed
Cma16g01147 Cma-Chr16:8819354 Cma06g01434 Cma-Chr6:9208912 2.82E-06 dispersed
Cma16g01147 Cma-Chr16:8819354 Cma14g01661 Cma-Chr14:12428989 3.66E-23 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g469 . . Bda06g00053 . . Bpe07g00146 . . . Cmo16g01198 Cma02g01509 Cma15g01171 . Car15g01060 . Cpe14g00951 . . . . . . . . . . . . . . . Cone8ag0358 Cone12ag0350 . . . Csa05g00366 Chy09g01142 . . . . . . . . Bma12g00130 . . Cmo15g01233 . Cma16g01147 . Car16g01144 . . Bhi12g00364 . . . . . . . . . . . . . Lsi09g00370 . . Cme09g01674
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005960 1 2 1 1 1 1 4 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g01147 Cma_Chr16 FPKM 11.810249 12.204372 19.362473 18.088486 8.683845 9.245546 8.485271 30.070375 29.14554 28.177855