Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g01151 ATGGCTGGATTGGATTTAGGAAGCCGATATCTAAATCACCTTCAAACGGGTGTAGATGATCCACTAAATCGCGGTGGTCATTTCTCCTCCGGCGACCACGACGACGACGACGATCCCCACCAAACCCTAGGTGGTCCGGGAGATGTGGTTGGCCGCCGCCCACGCGGCCGCCCACCAGGCTCCAAAAACAAGCCAAAGCCGCCAGTAATCATCACCCGAGAGAGCGCCAACACACTACGTGTCCACATCTTAGAGGTTGGCAGCGGCTGCGACATCTTTGATTGCATCGCTGCCTATGCTCGCCGGCGGCAGCGTGGGATCTGTATTTTGAGCGGTAGTGGAAACGTCACCAACGTCGGCCTCCGTCAGCCAGCGTCGGCAGGGGCGGTGCTAACACTTCAAGGGAGGTTTGAGATTTTGTCACTGTCCGGATCGTTTCTTCCGCCGCCTGCTCCACCGGGTGCCACTAGTTTGACAATATTTCTCGCCGGAGGACAAGGGCAGGTGGTGGGAGGGACGGTGGCCGGAGAATTAACGGCGGCAGGGCCAGTGATTTTGATTGCAGCTTCTTTTACTAATGTGGCGTATGAAAGATTACCACTTGATGAGGAGGATCAGCAGCAAGCTCCGACAGGCAGCGGCGGAGGCGGCGGCGGCGGAGTGAGTAACAACAATAACAACAACCCATTTCAAGACCCATCAAATTCAGGCCTTCCATTCTTGAATTTGCCACTTCATATGCAAAATGTTCAACTTCCACCCTTTTGA 768 54.95 MAGLDLGSRYLNHLQTGVDDPLNRGGHFSSGDHDDDDDPHQTLGGPGDVVGRRPRGRPPGSKNKPKPPVIITRESANTLRVHILEVGSGCDIFDCIAAYARRRQRGICILSGSGNVTNVGLRQPASAGAVLTLQGRFEILSLSGSFLPPPAPPGATSLTIFLAGGQGQVVGGTVAGELTAAGPVILIAASFTNVAYERLPLDEEDQQQAPTGSGGGGGGGVSNNNNNNPFQDPSNSGLPFLNLPLHMQNVQLPPF 255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 8853135 8853902 + CmaCh16G011510.1 Cma16g01151 311749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g01151 255 MobiDBLite consensus disorder prediction 15 70 - -
Cma16g01151 255 Gene3D - 79 208 - -
Cma16g01151 255 MobiDBLite consensus disorder prediction 26 42 - -
Cma16g01151 255 CDD DUF296 80 191 IPR005175 -
Cma16g01151 255 Pfam Plants and Prokaryotes Conserved (PCC) domain 80 193 IPR005175 -
Cma16g01151 255 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 23 40 254 - -
Cma16g01151 255 ProSiteProfiles PPC domain profile profile. 76 213 IPR005175 -
Cma16g01151 255 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 40 254 IPR014476 GO:0003680
Cma16g01151 255 MobiDBLite consensus disorder prediction 206 239 - -
Cma16g01151 255 MobiDBLite consensus disorder prediction 203 239 - -
Cma16g01151 255 SUPERFAMILY AF0104/ALDC/Ptd012-like 76 206 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g01151 Cma-Chr16:8853135 Cma17g00057 Cma-Chr17:253494 2.76E-88 dispersed
Cma16g01151 Cma-Chr16:8853135 Cma19g00242 Cma-Chr19:1713777 8.04E-94 wgd
Cma16g01151 Cma-Chr16:8853135 Cma02g01607 Cma-Chr2:9151665 2.27E-91 wgd
Cma16g01151 Cma-Chr16:8853135 Cma02g01513 Cma-Chr2:8630962 5.15E-68 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g01151 - - csv:101210132 377.867