Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g01152 ATGGATTCACGAGAGAGGTCGATGCCCTCTGTTCATCAACATCACCAACAATCAACTCCACCAAACAGGATGATGGGCAACGCTTCCTATTCCACAAATTTACCCAATACCAACAATTCTTCCCAAATGATCAACCCCAATTCCGCCGCTGCTCAAATCATGTCCTCCGCCTCCCGATTTCCCTTCAACTCCATGATGGGGTCCGCTTCTAAGCCCTCCGACTCTCCCAATACGGCTTCTTATGATGGATCGCATTCCGAATTGCGGACTGGTGGGTTTAACATTGATTCCGGAAAGAAGAAGCGAGGCCGACCCAGAAAGTATTCGCCTGATGGGAATATCGCCTTGGGTTTAGCGCCAACAACCATCACTAATTCCGCCGTTCCCGGCGATTCTTCCGGCATGAACTCGTCGGATCCTCGCCCTAAGAAGAACAGAGGACGGCCTCCCGGTACAGGGAAGAAGCAAATGGATGCTTTGGGGACTGGCGGTGTTGGCTTTACTCCGCATGTAATTCTGGTGAATCCAGGAGAGGATATTGCCTCAAAAGTTATGTCATTTTCACAGCAGGGGCCGCGAACCATTTGTATTCTCTCTGCCCATGGTGCTGTCTGCAATGTTACCCTTCACCAACCTGCAGCTGGTAGTGTGACATATGAGGGCCGCTACGAAATCATATCTCTATCAGGTTCCTTCTTGATTTCCGACAATAATGGTAATCGAAGTCGAACTGGTGGTTTAAGTGTGTCTCTAGCAAGTGCAGATGGTCAAGTTCTTGGTGGAGTGACCAACATGCTAACAGCAGCATCTACAGTTCAGGTCATAGTCGGTAGCTTTCTCGTCGACGGGAAAAAGCTAGGCGATAATATACAGAAATCTGGGCCATCTTCTACATCACCCAATATGTTAAACTTTAATACACCCGTGGCAGCAGGCTGTCCCTCTGAAGGCGCTTCAAATAATTCATCGGACGACAATGGTGGAAGCCCTTTAAGCCGGGGGCCGGGAATGTACACCAACGCCAACCAACCAATTCATAATATGCAGATGTATCAATTATGGGGTAGTCGAAATCAATAA 1080 48.52 MDSRERSMPSVHQHHQQSTPPNRMMGNASYSTNLPNTNNSSQMINPNSAAAQIMSSASRFPFNSMMGSASKPSDSPNTASYDGSHSELRTGGFNIDSGKKKRGRPRKYSPDGNIALGLAPTTITNSAVPGDSSGMNSSDPRPKKNRGRPPGTGKKQMDALGTGGVGFTPHVILVNPGEDIASKVMSFSQQGPRTICILSAHGAVCNVTLHQPAAGSVTYEGRYEIISLSGSFLISDNNGNRSRTGGLSVSLASADGQVLGGVTNMLTAASTVQVIVGSFLVDGKKLGDNIQKSGPSSTSPNMLNFNTPVAAGCPSEGASNNSSDDNGGSPLSRGPGMYTNANQPIHNMQMYQLWGSRNQ 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 8858536 8867165 - CmaCh16G011520.1 Cma16g01152 311750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g01152 359 MobiDBLite consensus disorder prediction 118 140 - -
Cma16g01152 359 MobiDBLite consensus disorder prediction 64 161 - -
Cma16g01152 359 MobiDBLite consensus disorder prediction 1 42 - -
Cma16g01152 359 CDD DUF296 168 279 IPR005175 -
Cma16g01152 359 Gene3D - 169 293 - -
Cma16g01152 359 MobiDBLite consensus disorder prediction 291 342 - -
Cma16g01152 359 Pfam Plants and Prokaryotes Conserved (PCC) domain 169 279 IPR005175 -
Cma16g01152 359 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 81 355 IPR039605 GO:0003680
Cma16g01152 359 SUPERFAMILY AF0104/ALDC/Ptd012-like 167 280 - -
Cma16g01152 359 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 13-LIKE ISOFORM X1 81 355 - -
Cma16g01152 359 ProSiteProfiles PPC domain profile profile. 163 301 IPR005175 -
Cma16g01152 359 SMART AT_hook_2 99 111 IPR017956 GO:0003677
Cma16g01152 359 SMART AT_hook_2 143 155 IPR017956 GO:0003677
Cma16g01152 359 MobiDBLite consensus disorder prediction 64 91 - -
Cma16g01152 359 MobiDBLite consensus disorder prediction 12 42 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g00655 Cma16g01152 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00961 Cma-Chr5:7769242 Cma16g01152 Cma-Chr16:8858536 2.05E-73 dispersed
Cma12g00694 Cma-Chr12:3753696 Cma16g01152 Cma-Chr16:8858536 6.20E-70 dispersed
Cma16g01152 Cma-Chr16:8858536 Cma17g00425 Cma-Chr17:2504984 1.02E-57 dispersed
Cma16g01152 Cma-Chr16:8858536 Cma19g00241 Cma-Chr19:1705112 3.10E-86 wgd
Cma16g01152 Cma-Chr16:8858536 Cma02g01609 Cma-Chr2:9155140 1.08E-121 wgd
Cma16g01152 Cma-Chr16:8858536 Cma06g00655 Cma-Chr6:3231771 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g01152 - - csv:101204243 629.787