Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g01154 ATGGAAAAGGACTACAGCGGCGAAGGCGACGGTGAGGTCTCGGCGGTAGTGACGGAGCAGCAGCAGCAACCAAACGCCGATGAAACTTATCTCACCACTTACCATCTCGCCGCAACGCCTTCCGGTCTGACTCAGGACGAGTTCGACGAGTTGAGGGACTTAGTAGCGGAGTTCCACATGTACAAACTCAGCCGCGGCCGGTGCTCCTCCTTACTGGCGCAGCGCGTGCAGGCGCCACCGGATACCGTGTGGTCCATCGTACGGCGGTTCGACAAGCCGCAGAGTTACAAGCACTTCATCAAGAGTTGTACGGTGAGCGAAGGATTCACAATGAAGCTAGGTTGTACGAGAGAGGTTAATGTAATCTCAGGCCTACCAGCGGATACTAGTAAGGAGAGACTCGATATTCACGACGACGAGCGGCGCGTCATCGGATTCAGCATCATCGGCGGTGAGCACCGCCTCCGGAATTACCGTTCGGTGACTTCGGTGCATCAGTTGGAGCGGGACGGCAAGATCTGGAGCGTGGTTTTGGAATCGTACGCAGTGGATGTTCCGCCGGGGAATACGGAGGAGGATGCTCGTTTGTTCGCCGATACGGTTGTGAAACTGAATCTACAGAAATTGGCGTCCGTCGCCGAAGTGATGAATCGTGGAGATAATCGGTAA 669 55.46 MEKDYSGEGDGEVSAVVTEQQQQPNADETYLTTYHLAATPSGLTQDEFDELRDLVAEFHMYKLSRGRCSSLLAQRVQAPPDTVWSIVRRFDKPQSYKHFIKSCTVSEGFTMKLGCTREVNVISGLPADTSKERLDIHDDERRVIGFSIIGGEHRLRNYRSVTSVHQLERDGKIWSVVLESYAVDVPPGNTEEDARLFADTVVKLNLQKLASVAEVMNRGDNR 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 8872184 8872852 + CmaCh16G011540.1 Cma16g01154 311752

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g01154 222 Pfam Polyketide cyclase / dehydrase and lipid transport 74 214 IPR019587 -
Cma16g01154 222 SUPERFAMILY Bet v1-like 68 211 - -
Cma16g01154 222 Gene3D - 30 222 IPR023393 -
Cma16g01154 222 PANTHER ABSCISIC ACID RECEPTOR PYR1-LIKE 39 221 - -
Cma16g01154 222 CDD PYR_PYL_RCAR_like 68 214 - -
Cma16g01154 222 PANTHER - 39 221 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g01154 K14496 PYL; abscisic acid receptor PYR/PYL family - csv:101204882 384.03
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma02g01612 Cma16g01154 CCT
Cma06g00652 Cma16g01154 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00331 Cma-Chr9:1368135 Cma16g01154 Cma-Chr16:8872184 1.39E-69 dispersed
Cma16g01154 Cma-Chr16:8872184 Cma07g01072 Cma-Chr7:5734453 9.31E-61 dispersed
Cma16g01154 Cma-Chr16:8872184 Cma19g00239 Cma-Chr19:1682622 4.66E-95 wgd
Cma16g01154 Cma-Chr16:8872184 Cma02g01612 Cma-Chr2:9167938 1.66E-98 wgd
Cma16g01154 Cma-Chr16:8872184 Cma06g00652 Cma-Chr6:3223761 1.28E-138 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g668 . . . . . . . Bma14g00150 Cmo06g00660 Cmo16g01205 Cma02g01612 . Car02g01371 . Sed04g0833 Cpe14g00958 Cpe05g00179 Bhi11g00153 Tan01g2184 Cmetu06g1142 . . Mch10g1649 . Cla10g00162 Cam10g0163 Cec10g0173 Cco10g0172 Clacu10g0164 Cmu10g1013 Cre10g0423 . . . . Lsi07g01201 . Chy04g00088 Cme06g02476 Blo03g00855 Blo19g00186 Bda07g00102 Bda09g00718 Bpe08g00837 Bpe11g00339 . Bma12g00209 . Cmo02g01656 Cmo19g00254 Cma06g00652 Cma16g01154 Car06g00582 Car16g01094 . Cpe15g00217 Bhi05g00505 . . . Hepe06g1024 . . Cla09g01132 Cam09g1188 Cec09g1202 Cco09g1223 . . Cre09g1149 . Csa03g04613 Chy06g02140 Cme04g00113
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001571 2 3 3 2 3 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 1 2 3 2 1 70
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g01154 Cma_Chr16 FPKM 24.017937 27.964632 3.477387 4.797652 15.290382 14.16691 12.086027 4.258999 2.715847 2.962209