Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g01157 ATGAATCTTTGGACCGACGAAAACGCGTCGTTGATGGAGGCCTTCATGAACTCCGATCTCTCCTCTTACTGGGCTCCATCGGCTGCGTCGTCTCATTCTCTCCACAACCAACCGCCGCCGCAGTCCTCCGCCTCAACTTCCAATCCGCCGCCGGATCCCCCTAAATCCGTCGCCGTTTTCAATCAGGAGACTCTGCAGCAGCGCCTCCAGGCGCTGATCGACGGCGCTAGGGAGAGCTGGACGTATGCGATTTTCTGGCAGTCGTCGTACGATTACCCCGATGGGTCGGTTTTGGGGTGGGGAGATGGGTATTACAAAGGGGAGGAGGATAAAGGGAAGGGAAAGGCGAAAGTAGTGACGTCGGCGGCTGAGCAAGCTCACCGGAAGAAGGTTCTCCGGGACCTTAACTCTTTGATTTCTGGATCCGCCGCCGGACCGGACGATGCGGTGGATGAGGAGGTTACGGATACGGAGTGGTTCTTTTTGGTTTCCATGACTCAGTCGTTTGTTAATGGAGTGGGGTTACCGAGTCAGGCGTTCTTTGACTCGACGCCGATTTGGATCTCCGGCGCTGATCGGTTGTCGGCGTCGGCCTGTGAACGGGCAAGACAGGGGAAGGTTTTTGGGTTACAGACGATGGTTTGTATTCCTTCTCCAAACGGCGTTGTCGAAATGGGTTCGACGGAATTGATTCACCGGACGTCCGATTTGATGAACAAAGTCAAGATTCTGTTCAATTTCAACAATCTTGAAACGAGTTCTTGGATATCGGAAACCACCGCCGCTGCTTCCACTGCCGACGAAGGAGAAAACGACCCGTCCTCGATGTGGATTAGTGAGCCGTCGAGTACAATCGCCACCACCGTCCCTTCCGGCGACGTTCCGAGGAAGCTAACCCAATCGGAAAATCAACAACAATCCCATCAAAAACAGAGCCAAAGCTTCTTAAACTTCTCCGACTACGGATTTGAATCAAATCCATCAAAGAGCATCACCACCGACACAACCACCACCACTACCACCACCAACACCCCGTCATTCAAGCCGGAATCCGGCGGGATGCTGAACTTCGGGAGCGGAAATCTCTTTTCCAGCCACGCACAGTACATAACAGACGAACAGAACGAAAAAAAGAGATCCCCTCCTTCTAGAAGTAGCAACGACGAAGGAATCCTCTCGTTCACCTCCGGCGTGATTTTACCCTCCTCCGGCAAGGTGAAATCCGGCGACTCTGATCACTCAGATCTGGAAGCTTCCGTGATCCGAGAAGTCGATAGCTGTACAAAATCCATAGAACCCGAAAAACGACCTAGAAAACGAGGCAGAAAACCAGCAAACGGAAGAGAAGAGCCACTGAATCACGTCGAAGCAGAGAGACAACGACGAGAGAAATTAAACCAGAAATTTTACGCTCTCCGAGCCGTAGTTCCAAACGTATCTAAAATGGACAAGGCCTCGCTGCTCGGCGACGCAGTTTCATACATCAACGAACTCAAATCGAAGCTCCAAATCATAGAAACAGAGAAAACAGAGATGGGAAAACATCTAGAGTTCATGAAGAAGGAGATGGGAGGGAAAGATCTAGGGCATTACACAAACACAATCGATCAAGATCTAAAAACAGGGAACAGAAAAGTAATGGAAATAGAAATCGAGGTTAAAATCATGGGATGGGACGCAATGATACGGATTCAAAGCAGTAAGAAGAATCATCCGGCGGCGAGATTGATGACGGCGTTGAAGGATTTGGACTTGGAAATGCTTCATGCGAGTGTGTCTGTAGTGAATGATCTGATGATTCAACAGGCGACAGTGAAGATGGGGAGCAGATGTTACACGCAGGAGCAGCTGAAAATGGCTCTGATCGCCCGAGTCGGCGGCGGCGGCGGTAACCATGGATCGATGTAG 1908 50.89 MNLWTDENASLMEAFMNSDLSSYWAPSAASSHSLHNQPPPQSSASTSNPPPDPPKSVAVFNQETLQQRLQALIDGARESWTYAIFWQSSYDYPDGSVLGWGDGYYKGEEDKGKGKAKVVTSAAEQAHRKKVLRDLNSLISGSAAGPDDAVDEEVTDTEWFFLVSMTQSFVNGVGLPSQAFFDSTPIWISGADRLSASACERARQGKVFGLQTMVCIPSPNGVVEMGSTELIHRTSDLMNKVKILFNFNNLETSSWISETTAAASTADEGENDPSSMWISEPSSTIATTVPSGDVPRKLTQSENQQQSHQKQSQSFLNFSDYGFESNPSKSITTDTTTTTTTTNTPSFKPESGGMLNFGSGNLFSSHAQYITDEQNEKKRSPPSRSSNDEGILSFTSGVILPSSGKVKSGDSDHSDLEASVIREVDSCTKSIEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQKFYALRAVVPNVSKMDKASLLGDAVSYINELKSKLQIIETEKTEMGKHLEFMKKEMGGKDLGHYTNTIDQDLKTGNRKVMEIEIEVKIMGWDAMIRIQSSKKNHPAARLMTALKDLDLEMLHASVSVVNDLMIQQATVKMGSRCYTQEQLKMALIARVGGGGGNHGSM 635
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 8881798 8883705 - CmaCh16G011570.1 Cma16g01157 311755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g01157 635 PANTHER MYC 5 625 IPR045084 GO:0003700|GO:0006355
Cma16g01157 635 MobiDBLite consensus disorder prediction 325 459 - -
Cma16g01157 635 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 449 498 IPR011598 GO:0046983
Cma16g01157 635 PANTHER TRANSCRIPTION FACTOR MYC2 5 625 - -
Cma16g01157 635 Gene3D - 448 525 IPR036638 GO:0046983
Cma16g01157 635 MobiDBLite consensus disorder prediction 325 350 - -
Cma16g01157 635 MobiDBLite consensus disorder prediction 261 313 - -
Cma16g01157 635 Pfam Helix-loop-helix DNA-binding domain 453 498 IPR011598 GO:0046983
Cma16g01157 635 SMART finulus 455 504 IPR011598 GO:0046983
Cma16g01157 635 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 452 517 IPR036638 GO:0046983
Cma16g01157 635 CDD bHLH_AtAIB_like 446 522 - -
Cma16g01157 635 MobiDBLite consensus disorder prediction 29 55 - -
Cma16g01157 635 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 65 245 IPR025610 -
Cma16g01157 635 MobiDBLite consensus disorder prediction 408 459 - -
Cma16g01157 635 MobiDBLite consensus disorder prediction 385 402 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g01614 Cma16g01157 CCT
Cma06g00648 Cma16g01157 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g01157 Cma-Chr16:8881798 Cma19g00070 Cma-Chr19:402667 1.57E-13 dispersed
Cma17g00431 Cma-Chr17:2538941 Cma16g01157 Cma-Chr16:8881798 2.61E-22 dispersed
Cma02g01803 Cma-Chr2:10035982 Cma16g01157 Cma-Chr16:8881798 3.80E-09 transposed
Cma16g01157 Cma-Chr16:8881798 Cma19g00236 Cma-Chr19:1667766 0 wgd
Cma16g01157 Cma-Chr16:8881798 Cma02g01614 Cma-Chr2:9172765 0 wgd
Cma16g01157 Cma-Chr16:8881798 Cma06g00648 Cma-Chr6:3215044 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36603 PF14215 bHLH-MYC_N 1.10E-52 CL0161 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g01157 K13422 - csv:101205372 1045.42