Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g01159 ATGGCGACCCATCTGGCGGAATCTCAAGAAGCCGATAGATATTTGGTTCCTCCGTTGGAAATTGAAGGTGGGTATTGGCAGTCGACTACTGAAGAAGCCCTAACTCAGCAATCTCTGGCTCCGCCTTCGTCTTGTGGAGATGGGATTTTTTCTTTTTCGCCTATTGACGGCTCTGCTAATCAGTCTTGGGGTACTTCTTCGTTAAACCCTAATGAGTCTTCCTCATTTTCAATTTACTCGTCTGATTCTGATGGAATCGTGCCATTGCCCTCGTTGCCCGTTTCATCATTCGTTGACAATTCATTGAATTGTTCTTCAGAACAAGGTTTCCCAACAAGTTCAGTGGCTGCCCAAGAAGCCAAATCTTTGTCAGTGGGTGCGGGGCTTGCAAATATGGGTAATACTTGCTTTATAAACGCAATCCTGCAGTGCCTCACTCATACTGCTCCATTTGTGGAGGGTCTTCGATCTGTCACTCATGATATGCCTTGTAACAGTGAAGATCTTTGTGTTCTTTGTGCAATTCGGGATCATATCGAGCTCTCCTTAACATCTATGGGCGGGATTATCTCCCCACTTCGACTTGTCGATAACTTGAACTACTTCTCGTCTTGTTTTCGGAGATACCAGCAGGAAGATGCCCATGAGTTCCTGCAGTGCTTCTTGGATAAACTTGAAAGATGCCTGGTATCAGAAGTCAAGGATCAAATTTCTTTTGAGGATGATGATGATCTAGTGAATAATGTGTTTGGTGGTCGTCTCATAAGCAACCTATGCTGCTGTAATTGTGGCCATTGTTCTGAAACCCATGAGCCTTTGGTCGACCTGAGCTTGGAGATTGAGAATGTCGACTCCCTTTCTAGTGCTTTGGAGTCTTTCACCAAGGTGGAGAAGATTGGTGATCCAGAGACAAAATTCAAGTGTGAAAACTGCAAAGAAGAGGTATTGGTGGAGAAGCAGCTTAAGCTCGAAAAGATCCCTTTGGTTACTACATTCCACTTAAAGAGATTCAAGGCTGATAGTTCTTTCATTGAGAAAATCGAAAAGCACTTGGAGTTTCCGTTAGAGTTAGATTTGCAGCCGTACAGCGTGAGAGGGCGTGATGCAGAGGTGGAGCTCAAGTATGAATTATATGCAATTGTGGAACACACAGGGTTTTCCTCTACTTCTGGACATTACTTCAGCTTTGTTCGCTCGTCTCCCGATACATGGCACAGAATGGATGACTCAATGGTTACTCCAGTTAGTGAAGATTATGTTCTGTCAAGGGAGGCCTACATTCTGTTATATAAGAGGAAGGGAACTTCATGGTTCTCGAGTTTAATCCAACAACGAGATCCTTGCTTAAATTCATGTTCCGATACTTTGCAAAGTATGGATACTGTTCGCTCTTCGTTGTCTGCTGAATCTATCGTCAATTGTGAAACTATGAATGTGCCTGTGGATATGTTGCGGCTGAGTCCTGCTCAGTTTTCTGTTGAAATGGGGGAGCAAGATACTGTTGCCAATGATTTGGGAAATCCTACCTCTGCTAACTTGCATATATTTGAGAGTGCAACACTCCAGTCTTCTCCCATCGTATCTAAGAACCTCTGCTCGAATGGAAATGATGAAGGTGTTGATGGTTTTCGTCCTCTTTCACCGACGAGATCTCCCAGCCCTGATATCGTTTTCCAAACTCCAGAACCACAATACCAAATCCCAGTCAGTCATCTGAAGACCGAAAAGTGCTCGACGTCTGGAAGGCCATCGAACAAGGGTGTGGAAGATCCTGAGAGAAAAGCAGCCCTGAGATACATTAAGAAGAGCATGCCGGGTTCGAGAGGGTTGAAAATGATCAATGCTATATTGGGACCTCAAAATGAAGGTCCCTTAAACAAGAAGAAGAGACTAAGGTCATTGCCATGCAAAAGGTCAAGCCCGCCGAACAATCGTCGCAAAACGAGTATAGTTTTGTGA 1959 44.31 MATHLAESQEADRYLVPPLEIEGGYWQSTTEEALTQQSLAPPSSCGDGIFSFSPIDGSANQSWGTSSLNPNESSSFSIYSSDSDGIVPLPSLPVSSFVDNSLNCSSEQGFPTSSVAAQEAKSLSVGAGLANMGNTCFINAILQCLTHTAPFVEGLRSVTHDMPCNSEDLCVLCAIRDHIELSLTSMGGIISPLRLVDNLNYFSSCFRRYQQEDAHEFLQCFLDKLERCLVSEVKDQISFEDDDDLVNNVFGGRLISNLCCCNCGHCSETHEPLVDLSLEIENVDSLSSALESFTKVEKIGDPETKFKCENCKEEVLVEKQLKLEKIPLVTTFHLKRFKADSSFIEKIEKHLEFPLELDLQPYSVRGRDAEVELKYELYAIVEHTGFSSTSGHYFSFVRSSPDTWHRMDDSMVTPVSEDYVLSREAYILLYKRKGTSWFSSLIQQRDPCLNSCSDTLQSMDTVRSSLSAESIVNCETMNVPVDMLRLSPAQFSVEMGEQDTVANDLGNPTSANLHIFESATLQSSPIVSKNLCSNGNDEGVDGFRPLSPTRSPSPDIVFQTPEPQYQIPVSHLKTEKCSTSGRPSNKGVEDPERKAALRYIKKSMPGSRGLKMINAILGPQNEGPLNKKKRLRSLPCKRSSPPNNRRKTSIVL 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 8895495 8898736 + CmaCh16G011590.1 Cma16g01159 311757

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g01159 652 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 115 458 - -
Cma16g01159 652 MobiDBLite consensus disorder prediction 618 652 - -
Cma16g01159 652 Pfam Ubiquitin carboxyl-terminal hydrolase 128 430 IPR001394 GO:0004843|GO:0016579
Cma16g01159 652 MobiDBLite consensus disorder prediction 571 592 - -
Cma16g01159 652 MobiDBLite consensus disorder prediction 637 652 - -
Cma16g01159 652 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 375 393 IPR018200 GO:0004843|GO:0006511
Cma16g01159 652 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 127 433 IPR028889 -
Cma16g01159 652 Gene3D Cysteine proteinases 125 435 - -
Cma16g01159 652 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 115 458 - -
Cma16g01159 652 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 128 143 IPR018200 GO:0004843|GO:0006511
Cma16g01159 652 SUPERFAMILY Cysteine proteinases 127 432 IPR038765 -
Cma16g01159 652 MobiDBLite consensus disorder prediction 571 585 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g01159 K11855 USP36_42; ubiquitin carboxyl-terminal hydrolase 36/42 [EC:3.4.19.12] - csv:101210383 1003.82
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00273 Cma-Chr4:1337963 Cma16g01159 Cma-Chr16:8895495 3.53E-27 dispersed
Cma04g01243 Cma-Chr4:6375111 Cma16g01159 Cma-Chr16:8895495 4.98E-28 dispersed
Cma08g00758 Cma-Chr8:4540218 Cma16g01159 Cma-Chr16:8895495 8.77E-10 dispersed
Cma09g00398 Cma-Chr9:1681868 Cma16g01159 Cma-Chr16:8895495 6.35E-19 dispersed
Cma12g00861 Cma-Chr12:6386568 Cma16g01159 Cma-Chr16:8895495 1.00E-73 dispersed
Cma16g00463 Cma-Chr16:2316505 Cma16g01159 Cma-Chr16:8895495 2.17E-46 dispersed
Cma16g01159 Cma-Chr16:8895495 Cma04g00641 Cma-Chr4:3273122 1.39E-45 dispersed
Cma20g00140 Cma-Chr20:678683 Cma16g01159 Cma-Chr16:8895495 4.87E-13 dispersed
Cma16g01159 Cma-Chr16:8895495 Cma01g01643 Cma-Chr1:11252104 1.98E-50 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g673 . . . . . . . Bma14g00154 . Cmo16g01210 . . . . Sed02g0114 Cpe14g00962 . Bhi11g00158 Tan01g2190 Cmetu06g2228 . . Mch10g1656 . Cla10g00157 Cam10g0157 Cec10g0167 Cco10g0166 Clacu10g0159 Cmu10g1008 Cre10g0418 Cone8ag0473 Cone12ag0467 . . Lsi07g01196 . . Cme06g02471 Blo03g00860 . Bda07g00098 . . Bpe11g00335 . . . . . . Cma16g01159 . Car16g01099 . . . . . . . . . . . . . . . . . Csa03g00168 Chy06g02145 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003716 1 3 2 2 2 1 1 1 1 1 1 1 2 2 2 1 1 2 1 1 2 2 2 2 1 1 1 4 1 1 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g01159 Cma_Chr16 FPKM 12.828077 14.675488 13.451008 13.66993 19.982777 18.46373 18.501688 4.511031 4.267066 4.838046