Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g01169 ATGGGTGCTGGAGGTCCTGATGATGAAGACAACCGATGGCCGCCATGGCTAAAACCTCTACTAAGAGAAACCTTCTTCGTTCAATGCAAACACCACATCGATTCCCACAAAAGCGAATGCAATATGTACTGTTTAGATTGTATGAACGGCGCTCTCTGTTCTCTTTGCCTCAACTTTCACAAAGATCATCGCGCCATTCAGATTCGAAGGTCTTCTTACCATGATGTGATCAGAGTTTCTGAGATTCAAAAGGTTTTGGACATTTCTGGTGTTCAAACTTACATTATCAACAGCGCTAGAGTTGTGTTCTTGAACGAAAGGCCTCAGCCGCGTCCTGGCAAAGGCGTTACGAACACTTGTGAAGTCTGTGAACGCAGCCTCCTTGATTCCTTCCGATTCTGTTCCCTTGGTTGTAAGATAGTCGGGACATCGAGGAATTTCCAGAAGAAGAGAGTGGCGGGAGAGGCGGGGGTCGCCGCCACAATGGCGGTATCCGACTCGGAGGACTCGTACAGTAGTAGCAATCATAGGCGGAGCAAGAGCAACAACAGCCACAACAGCCACAACAGCCACAGCAGCAACAAGTTTCAGAGTTTTAGTCCTTCGACGCCGCCTCCAACTTCGGTTAACTATAGGACAGCTAAACGGAGGAAGGGAATCCCACATCGAGCTCCGATGGGAGGGCTAGTTTTAGAATATTAG 702 48.43 MGAGGPDDEDNRWPPWLKPLLRETFFVQCKHHIDSHKSECNMYCLDCMNGALCSLCLNFHKDHRAIQIRRSSYHDVIRVSEIQKVLDISGVQTYIINSARVVFLNERPQPRPGKGVTNTCEVCERSLLDSFRFCSLGCKIVGTSRNFQKKRVAGEAGVAATMAVSDSEDSYSSSNHRRSKSNNSHNSHNSHSSNKFQSFSPSTPPPTSVNYRTAKRRKGIPHRAPMGGLVLEY 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 8959942 8962482 + CmaCh16G011690.1 Cma16g01169 311767

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g01169 233 Pfam PLATZ transcription factor 69 140 IPR006734 -
Cma16g01169 233 PANTHER - 1 229 - -
Cma16g01169 233 MobiDBLite consensus disorder prediction 165 210 - -
Cma16g01169 233 MobiDBLite consensus disorder prediction 164 233 - -
Cma16g01169 233 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 1 229 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g01169 - - - csv:101210628 374.4
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma02g01615 Cma16g01169 CCT
Cma02g01615 Cma16g01169 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00808 Cma-Chr12:5861464 Cma16g01169 Cma-Chr16:8959942 2.93E-55 dispersed
Cma14g00249 Cma-Chr14:1087676 Cma16g01169 Cma-Chr16:8959942 3.67E-61 dispersed
Cma16g01169 Cma-Chr16:8959942 Cma20g00900 Cma-Chr20:4367143 2.80E-88 dispersed
Cma16g01169 Cma-Chr16:8959942 Cma19g00232 Cma-Chr19:1597071 4.43E-119 wgd
Cma16g01169 Cma-Chr16:8959942 Cma02g01615 Cma-Chr2:9178487 3.75E-124 wgd
Cma16g01169 Cma-Chr16:8959942 Cma06g00643 Cma-Chr6:3163061 1.40E-131 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g676 Blo02g00989 . Bda06g01273 Bda08g00631 Bpe05g00527 Bpe07g00215 Bma07g00928 Bma14g00156 . Cmo16g01219 Cma02g01615 . Car02g01375 . . Cpe14g00968 Cpe05g00174 Bhi11g00028 Tan01g2199 . . . Mch10g1668 . Cla10g00150 Cam10g0146 Cec10g0155 Cco10g0155 Clacu10g0149 Cmu10g0996 Cre10g0407 Cone1ag0916 Cone5ag0625 . . Lsi07g01185 . Chy04g00100 Cme06g02463 Blo03g00864 Blo19g00191 Bda07g00094 Bda09g00728 Bpe08g00831 Bpe11g00332 Bma05g00712 Bma12g00214 Sed01g4113 Cmo02g01658 Cmo19g00247 . Cma16g01169 . Car16g01102 . Cpe15g00208 Bhi05g00487 Tan07g1984 Cmetu04g2656 Lac11g2421 Hepe06g1008 . Lcy12g1952 Cla09g01124 Cam09g1176 Cec09g1189 Cco09g1206 . . Cre09g1137 . Csa03g04602 Chy06g02150 Cme04g00125
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000618 6 3 4 3 4 3 6 3 3 3 3 3 4 3 3 5 3 4 6 3 3 2 3 2 3 2 3 4 4 2 103
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36604 PF04640 PLATZ 2.60E-30 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g01169 Cma_Chr16 FPKM 158.768799 169.748718 104.994041 102.680145 7.371792 4.666749 5.417932 143.204422 150.831772 142.988083