Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g01171 ATGGCGACGCTCGAATCTGCAATTCCAATTATCTCTCAATACATTGCTTCTTCTTCTTCCTCTTCTTCTTCTTCTTCCTCGAAATTGTCCTTCCATAAACTTCCCTCCGCCATTAAGCTTCGCATTTCCTTCTCCTCTCCTCTCCTTTCCCTCAATCCCACAACCGCCGTTTCCCCTCTCCCCCTCTTTCTCACAAACCCATGGCGAAATCGCGGCGGCGGCGATCGTTTTTGCTCCGCAGTGCAAGAGGTTAGTTTGGAGGAAGCTTCGGAGGAAAATCAGGATGTGAATCAGAAGAGAAAGCTATACATATTCAATTTGCCTTGGTCTTTCTCTGTCGTCGACATTAAGGAGCAGTTTGGACAATGCGGAACTGTCACTGATGTTGAGATTATAAAGCAGAAAAATGGAAGGAGCAGGGGATTTGCCTTTGTGACTATGGCTTCACCAGATGAAGCTCAAGCTGCTATTCAGAAATTTGACTCTCAAGAAATATCAGGAAGAGTTATAAAGGTAGAGTTTGCAAAGAGATTGAAGAAGCCTCCTCCTCCAAAACCTCCAGGCCCACCTCCTGGAGAGACTGTGCATAAGCTTTATGTATCCAATCTTGCATGGAAGGCGAGATCCACCAATCTCAGAGAATTCTTTTCTGAAAACTTCAACCCAATTGCAGCCAGGGTTGTCTTCGATAGCCCCTCTGGAAAATCTGCTGGCTATGGCTTTGTTTCTTTTGCTACTCGAGAGGAAGCAGAAACTGCACTTTCTTCATTGGAGGGGAAGGAGCTGATGGGCAGGCCCCTTCGCCTAAAATTCAGTGAAAGAAGTGTTGTTAAATCAGAAACTCCAAAAGAAGACACTGTTGAAAGCCAACCTGAAGAATCACAGATCCCCTCGGATTCAACATCAGATTGA 912 45.5 MATLESAIPIISQYIASSSSSSSSSSSKLSFHKLPSAIKLRISFSSPLLSLNPTTAVSPLPLFLTNPWRNRGGGDRFCSAVQEVSLEEASEENQDVNQKRKLYIFNLPWSFSVVDIKEQFGQCGTVTDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKKPPPPKPPGPPPGETVHKLYVSNLAWKARSTNLREFFSENFNPIAARVVFDSPSGKSAGYGFVSFATREEAETALSSLEGKELMGRPLRLKFSERSVVKSETPKEDTVESQPEESQIPSDSTSD 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 8970857 8974439 + CmaCh16G011710.1 Cma16g01171 311769

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g01171 303 MobiDBLite consensus disorder prediction 271 303 - -
Cma16g01171 303 PANTHER OS02G0815200 PROTEIN 1 291 - -
Cma16g01171 303 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 196 274 IPR000504 GO:0003723
Cma16g01171 303 SUPERFAMILY RNA-binding domain, RBD 93 184 IPR035979 GO:0003676
Cma16g01171 303 PANTHER CHLOROPLAST, PUTATIVE-RELATED 1 291 - -
Cma16g01171 303 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 171 IPR000504 GO:0003723
Cma16g01171 303 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 198 268 IPR000504 GO:0003723
Cma16g01171 303 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 177 IPR000504 GO:0003723
Cma16g01171 303 SUPERFAMILY RNA-binding domain, RBD 181 274 IPR035979 GO:0003676
Cma16g01171 303 Gene3D - 74 179 IPR012677 -
Cma16g01171 303 Gene3D - 180 286 IPR012677 -
Cma16g01171 303 SMART rrm1_1 101 173 IPR000504 GO:0003723
Cma16g01171 303 SMART rrm1_1 197 270 IPR000504 GO:0003723
Cma16g01171 303 MobiDBLite consensus disorder prediction 271 290 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g01171 - - - cmax:111500156 557.37
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01629 Cma-Chr1:11170874 Cma16g01171 Cma-Chr16:8970857 4.36E-27 dispersed
Cma16g01171 Cma-Chr16:8970857 Cma06g01289 Cma-Chr6:8572392 5.76E-08 dispersed
Cma16g01171 Cma-Chr16:8970857 Cma09g00580 Cma-Chr9:2655147 2.84E-39 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g678 . . . . . . . . . Cmo16g01221 . . . . Sed02g0123 Cpe14g00970 . Bhi11g00026 Tan01g2201 Cmetu06g1790 . . Mch10g1673 . Cla10g00148 Cam10g0144 Cec10g0153 Cco10g0153 Clacu10g0147 Cmu10g0994 Cre10g0405 . . . . Lsi07g01183 . . Cme06g02461 Blo03g00866 . . . Bpe08g00829 . . . . . . . Cma16g01171 . Car16g01104 . . . . . . . . . . . . . . . . . Csa03g00157 Chy06g02152 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012628 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g01171 Cma_Chr16 FPKM 1.526271 1.888514 8.945354 9.577685 128.529968 95.083191 130.389709 4.314891 3.955515 3.788594