Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g01174 ATGGTTTCGAGGTCTTATTCTAACTTGTTAGAGCTTGCTTCTGGTGGTTGTTCTCCTACTTTTGGCCTTGGCCGAGAGAAGAAGAGGCTTCCTAGAGTGGCTACTGTGGCTGGAGTCTTGTCTGAACTTGACGATGATAGCTGCAACAGCACTGGCTCGGATGCCCTTTCGTCGGTATCGCAAGACCGTATGATCATTGTTGGGAATCAACTCCCGATACGAGCAAATCGAGACGATAATGGAGAATGGGAGTTTAGTATGGATGAAGATTCACTTCTTTTACAGCTTAAAGATGGACTTGGAGAAGATGTGGAAGTGATTTATATTGGTTGTCTTAGAGAAGAGGTTGATCCAAGAGAGCAAGATGATGTTGCACAAACACTCTTGGATCGATTCAAGTGTGTCCCGACGTTCCTTCCTCCCGAGCTTTTTAGTAAATTTTATCATGGATTCTGCAAGCAACATTTATGGCCATTGTTTCACTATATGCTTCCCTTGTCACCGGACCTTGGTGGTCGATTCGATAGGTCGCTTTGGCAAGCGTATCTTTCAGTGAATAAGATATTTGCAGATAAAGTTATGGAAGTGATTAGTCCTGATGATGACTTCGTTTGGGTTCATGATTACCATTTGATGGTTTTGCCAACATTTTTGAGGAAGAGGTTTAACAGGGCAAAGCTCGGATTCTTCCTACATAGTCCATTTCCTTCGTCCGAGATTTACCGAACCCTTCCCGTAAGAGATGAACTTCTTCGAGCACTATTGAACTCTGATCTTATTGGCTTCCACACGTTTGATTATGCTAGGCACTTCTTATCTTGCTGTAGCAGAATGCTCGGTCTCTCTTATCAATCTAAGCGAGGCTACATTGGGCTTGAATACTACGGTCGTATGGTGAGTATTAAGATTCTTCCTGTCGGTATTCATATCGGTCAGCTACAAAATGTATTGAATCTGCCTGAGACAGTATCCAAAGTTGCTGAATTGCAAGAGCGGTTCAAGGGTCAAACTGTTTTGCTCGGGGTCGATGATATGGACATATTTAAAGGGATCAGCCTGAAACTTTTGGCGTTCGAACAATTGCTCCGACAACATCCCGAGAGATGGGGTAAAGCTGTGTTGGTACAGATTGCGAACCCTGCACGAGGCAGAGGGAAAGATGTACAGGAGGTTATGGCTGAAACTACTGCAACAGTGGATAGAATTAATGCAACATTCAGAAGGCCAGGATATGAGCCTGTGGTTTTGATCAACACTCCCTTGCAGTTTTACGAGCGAAACGCTTATTATGCAATTGCTGAATGCTGCCTTGTTACAGCAGTGAGAGACGGGATGAATCTTATACCTTACGAGTATATTATATGTCGACAAGGCAACGAAGAACTCGACAATGTTCTCGGGCTAAATCCTTCAACTCCAAAGAAAAGCATGCTCGTGTTGTCTGAGTTTATTGGGTGTTCACCATCACTTAGTGGTGCTATTCGTGTTAATCCTTGGAATATTGAAGCTGTCACCGAAGCGATGGACTCTGCCCTGGTAATCCCGGAGGCCGAAAAGCAACTGCGACATGAAAAGCACTATAGGTATGTTAGTACGCACGATGTTGCGTATTGGGCACGAAGCTTTTTGCAGGATTTGGGCAGGGCTTGCAGAGACCATTCAATGAGGAGGTGCTGGGGCATAGGTTTCGGTTTAGGATTTCGAGTTATTGCCCTGGATCCAAATTTCAGGAAGCTTTCGGTTGATCATATCGTTTCGGTGTATAAACGAACCTGTCACCGAGCAATTTTGTTAGATTATGATGGTATCATGATGCTTCCGGGATCGATTAGTATGAATCCAACTTCAGAAGCCCTTGGAATCCTGAACAACCTGTGTAAAGATCCTAAAAATGTCGTGTTTCTCGTTAGCGGAAAGGATCGAAAAACTCTGACCAAATGGCCAAATCATACAGCAGATTGGGAGACGTGTGTAGGTGTGACCGATTTTGACTGGAAACAGATTGCAGAACCCGTTATGCAATTGTATACCGAGACAACCGATGGCTCTACAATCGAAACTAAAGAGAGTGCGCTCGTTTGGAACTACCTTTACGCGGATCCTGATTTCGGGTCGTGCCAGGCCAAGGAACTTTTAGATCACCTGGAAAGTGTTCTTGCCAATGAGCCAGTTTCTGTCAAGAGTGGGCAACACATTGTAGAAGTCAAACCTCAGGGTGTAAACAAGGGCATTGTAGCAGAACATCTCTTGCAAACAATGAAGGAGAAAGGAATGCTTCCCGATTTCGTTCTATGCATCGGAGACGACAGGTCGGACGAGGATATGTTCGAGGTGATAAGAAGTGCAAAAGCCACCCTTCCTCCCGGTGCCGAAGTGTTCGGTTGCACCGTTGGCCAGAAACCGAGCAAGGCCAAGTACTACTTAGAAGACACACACGAAATCTTGAGAATGTTACAAGGTCTCACCCATGCGTCTGAGCATGCCGCTAGAGCTGCTCCGCAGATGACGACGACGACAACGACAACGACGCCTTACAGAGTGGTAATTTCAGAGAAAAAAAAGAAAAACCGTTTCCCTCCGTCGTTCTTCCTCCCTCTCCCTCTCACGTTCAGCTCCCACCCCTGCAGTTTCCCCGGCGACTTGCAGCAGCTCCGACCGGCGACATTATCTGAACAACGATCAACGCTCACTTCCAGACAGAGAAAAGCGGTGCGCGATCACCCACGTCGGAATCCTTGCTGGACGGCGTGCGGCTCACCCACGAACCAGAGGCGTGACAACGACGCTATTCCGGCGGATCTAGTCAAGAAGTGCTCGTGCAATTCTCTCGACCCCACAACCTGCATCCGCGACGACAGATTTTCAACGCAAATACCTCCTTGCGGCAGTGGACAGCCACTCACAAACGAACCCGTTCTGCTTTATATTCGCAACCTCGAGTGA 2943 46.55 MVSRSYSNLLELASGGCSPTFGLGREKKRLPRVATVAGVLSELDDDSCNSTGSDALSSVSQDRMIIVGNQLPIRANRDDNGEWEFSMDEDSLLLQLKDGLGEDVEVIYIGCLREEVDPREQDDVAQTLLDRFKCVPTFLPPELFSKFYHGFCKQHLWPLFHYMLPLSPDLGGRFDRSLWQAYLSVNKIFADKVMEVISPDDDFVWVHDYHLMVLPTFLRKRFNRAKLGFFLHSPFPSSEIYRTLPVRDELLRALLNSDLIGFHTFDYARHFLSCCSRMLGLSYQSKRGYIGLEYYGRMVSIKILPVGIHIGQLQNVLNLPETVSKVAELQERFKGQTVLLGVDDMDIFKGISLKLLAFEQLLRQHPERWGKAVLVQIANPARGRGKDVQEVMAETTATVDRINATFRRPGYEPVVLINTPLQFYERNAYYAIAECCLVTAVRDGMNLIPYEYIICRQGNEELDNVLGLNPSTPKKSMLVLSEFIGCSPSLSGAIRVNPWNIEAVTEAMDSALVIPEAEKQLRHEKHYRYVSTHDVAYWARSFLQDLGRACRDHSMRRCWGIGFGLGFRVIALDPNFRKLSVDHIVSVYKRTCHRAILLDYDGIMMLPGSISMNPTSEALGILNNLCKDPKNVVFLVSGKDRKTLTKWPNHTADWETCVGVTDFDWKQIAEPVMQLYTETTDGSTIETKESALVWNYLYADPDFGSCQAKELLDHLESVLANEPVSVKSGQHIVEVKPQGVNKGIVAEHLLQTMKEKGMLPDFVLCIGDDRSDEDMFEVIRSAKATLPPGAEVFGCTVGQKPSKAKYYLEDTHEILRMLQGLTHASEHAARAAPQMTTTTTTTTPYRVVISEKKKKNRFPPSFFLPLPLTFSSHPCSFPGDLQQLRPATLSEQRSTLTSRQRKAVRDHPRRNPCWTACGSPTNQRRDNDAIPADLVKKCSCNSLDPTTCIRDDRFSTQIPPCGSGQPLTNEPVLLYIRNLE 980
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 8986427 8992310 - CmaCh16G011740.1 Cma16g01174 311772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g01174 980 Gene3D - 660 738 - -
Cma16g01174 980 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 63 550 - -
Cma16g01174 980 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UDP-FORMING] 6 1 828 - -
Cma16g01174 980 Gene3D Glycogen Phosphorylase B; 55 314 - -
Cma16g01174 980 SUPERFAMILY HAD-like 594 821 IPR036412 -
Cma16g01174 980 Pfam Trehalose-phosphatase 597 811 IPR003337 GO:0003824|GO:0005992
Cma16g01174 980 Pfam Glycosyltransferase family 20 63 546 IPR001830 GO:0003824|GO:0005992
Cma16g01174 980 Gene3D Glycogen Phosphorylase B; 315 531 - -
Cma16g01174 980 Gene3D - 596 808 IPR023214 -
Cma16g01174 980 TIGRFAM T6PP: trehalose-phosphatase 594 822 IPR003337 GO:0003824|GO:0005992
Cma16g01174 980 Coils Coil 972 980 - -
Cma16g01174 980 CDD HAD_TPP 595 813 - -
Cma16g01174 980 MobiDBLite consensus disorder prediction 890 909 - -
Cma16g01174 980 CDD GT20_TPS 63 546 IPR001830 GO:0003824|GO:0005992
Cma16g01174 980 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 1 828 IPR001830 GO:0003824|GO:0005992
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00646 Cma-Chr6:3189733 Cma16g01174 Cma-Chr16:8986427 0 dispersed
Cma07g00170 Cma-Chr7:828739 Cma16g01174 Cma-Chr16:8986427 0 dispersed
Cma11g01907 Cma-Chr11:12613065 Cma16g01174 Cma-Chr16:8986427 0 dispersed
Cma16g01174 Cma-Chr16:8986427 Cma19g01006 Cma-Chr19:8674708 0 dispersed
Cma16g01174 Cma-Chr16:8986427 Cma04g00086 Cma-Chr4:429400 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g01174 K16055 - csv:101207192 1625.53