Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g01177 ATGTCGGTTAAAACTGTTAAAGTCAGCAATGTCTCCTTGGGAGCGTCTGAACGAGATCTCAAGGAGTTTTTTTCCTTCTCGGGTGACATTGCATATGTTGAAATGCAGAGTGAAAGTGAACGGTCTCAAATCGCTTACGTAACCTTTAAGGATGCACAAGGAGCAGAGACTGCCACTCTTTTGTCTGGAGCGACAATAGTGGATCTTTCTGTCAACATCACTCCATGTCCTGATTATGTGCTCCCTCCTGAAGCTACCGCACCACCCCCTGCCCCTGGAACTAATGCACCTGGAACGGCTGAATCCGCCTATCAGAAAGCAGAGGATGTGGTTAGCAGTATGCTTGCCAAGGGATTTATCTTGGGCAAAGACGCACTCAACTCTGCAAAGGCATTTGATGAGAAACACCAGTTATCTTCCACAGCTTCAGCCAAAGTAGCTACATTGGATAAAAAAATTGGGTTCACTGAGAAAATTAGCGCTGGAACGGTGTTGGTGGGCGACAAAGTTCGAGAAGTAGACCAGAAGTTTCAGGTTTCAGAGAAGACTAAATCAGCATTTGCAGTTGCAGAAGAGAAAGTTAGCAATGCTGGAGCTGCCATTATGAGTAACCGATATGTAAAGAGTGGGACTAGCTGGGTTGCTGATACTTTCAATAAGGTAGCCAAGGCAGCTGGAGAAGTTGGTCAGAAAACAAAAGAGAAAATCGCGGTGTCGGAAGAAGATCAGAAAAAGAAGACGGTCGAAACTTTGCATCTCCCGGAATCCCCTAAAGCAGCACCTGTGCCCCCTGAGCCTCAACAACGTCCCAAGCCCGAACCCGCTCAAGGTCTGATCCTCTGA 843 46.98 MSVKTVKVSNVSLGASERDLKEFFSFSGDIAYVEMQSESERSQIAYVTFKDAQGAETATLLSGATIVDLSVNITPCPDYVLPPEATAPPPAPGTNAPGTAESAYQKAEDVVSSMLAKGFILGKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKISAGTVLVGDKVREVDQKFQVSEKTKSAFAVAEEKVSNAGAAIMSNRYVKSGTSWVADTFNKVAKAAGEVGQKTKEKIAVSEEDQKKKTVETLHLPESPKAAPVPPEPQQRPKPEPAQGLIL 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 9011699 9014615 + CmaCh16G011770.1 Cma16g01177 311775

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g01177 280 SMART rrm1_1 5 74 IPR000504 GO:0003723
Cma16g01177 280 SUPERFAMILY RNA-binding domain, RBD 3 76 IPR035979 GO:0003676
Cma16g01177 280 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 78 IPR000504 GO:0003723
Cma16g01177 280 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 252 - -
Cma16g01177 280 PANTHER BINDING PARTNER OF ACD11 1 1 252 - -
Cma16g01177 280 MobiDBLite consensus disorder prediction 229 252 - -
Cma16g01177 280 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7 64 IPR000504 GO:0003723
Cma16g01177 280 Gene3D - 2 74 IPR012677 -
Cma16g01177 280 MobiDBLite consensus disorder prediction 257 271 - -
Cma16g01177 280 MobiDBLite consensus disorder prediction 229 280 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g01177 - - - csv:101207930 440.269
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g00637 Cma16g01177 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00463 Cma-Chr2:2427854 Cma16g01177 Cma-Chr16:9011699 2.11E-98 dispersed
Cma03g00231 Cma-Chr3:3419626 Cma16g01177 Cma-Chr16:9011699 6.92E-69 dispersed
Cma04g00084 Cma-Chr4:418288 Cma16g01177 Cma-Chr16:9011699 3.27E-95 dispersed
Cma04g01040 Cma-Chr4:5389046 Cma16g01177 Cma-Chr16:9011699 7.55E-92 dispersed
Cma04g02758 Cma-Chr4:18543307 Cma16g01177 Cma-Chr16:9011699 4.36E-38 dispersed
Cma16g01177 Cma-Chr16:9011699 Cma20g00925 Cma-Chr20:4526850 4.26E-98 dispersed
Cma16g01177 Cma-Chr16:9011699 Cma06g00637 Cma-Chr6:3125927 1.96E-135 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g710 . . . . . . . . Cmo06g00642 Cmo16g01227 . . . . . Cpe14g00976 . Bhi11g00013 . . . . . . Cla10g00137 Cam10g0136 Cec10g0146 Cco10g0146 Clacu10g0140 Cmu10g0987 Cre10g0398 . Cone12ag0564 . . Lsi07g01175 . . Cme06g02453 Blo03g00876 . Bda07g00083 Bda09g00754 Bpe08g00810 Bpe11g00320 . . . . . Cma06g00637 Cma16g01177 Car06g00568 Car16g01110 . . . . . . . . . . . . . . . . . Csa03g00147 Chy06g02162 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001653 2 4 2 2 2 2 4 2 2 1 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 3 2 2 70
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g01177 Cma_Chr16 FPKM 7.949921 8.808199 4.391359 5.927671 34.844963 32.512417 35.139278 3.177424 3.411002 3.276112