Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g01181 ATGGAAATGCACGCCGTCTCCGAGCACTGCCGTCTTCAGCCTCGGAGATTCTCTCTTTATTGCCGCTTGCGTGTGCTCGTCGCTTTCCTCCGATTCCGCTCTGGAACCTCTGGATCTCGGAAAATCTGGTTGTTCTTGTTCTTCGTCTCTTTTGAGAATGTGGTCCGCTTCCTCCTCCTTTCGCTCCTGCGCTTGAATGCTCCTACTTGGACTGGTTTCGGTTTCTGGATTTTCGATTTGTTTTTAACTCTGTTTCTCCGTGGTGGTGCTGTTTCGACGAAGAGAACGAAGACGGAGGCGAGTAAGAATAAGACGCAGCTCCGGGATGAGATGGTGGAGGGAAAAAATTGTAAATCGAGAGAGGATAGAAATGGGCTAGCTCTTCTGAAGCTCAAGAGGCTTCAGGCTACAAATTCTGAAACTGCCAACAAAACTTCATCTGTCAAGAATATGATGAATAGAAGTGGAGGTGATGCTTTAAGGGTCTCATCTACTTGTGGTGTGAGATTACTTAGTGGCAATGTAGAAACCTTTTCTCGTTCAAGTGGCATGTCGAATGAGAGGGATGTCTTTTCTAAAAGGAGAGTAGACAAGTTTGAGTATGATGATTTAGAGTGGACCGAAAAGATTCCGGAATGCCCTGTATATTCTCCGTCAAAGGAGGAATTTGAGGATCCTTTGGTCTATTTGCAAAAGATAGCTCCTGAAGCCTCAAAATACGGCATATGCAAGATTATCTCCCCACTGATTGCTTCTGTTCCTGCTGGTGCTTTATTAAGTAAGGAGAAACCAGGTTTCAAGTTTACAACGAGAGTGCAACCTTTTCGCTTTGCTGAATGGGATACTGATGATCAGGTTACCTTTTACATGAGTGGCAGGAACTATTCATTTCGCGATTTTGAAAAATTTGCGAACAAGATATATGCCCGTAGATATAGTAGTTCTGGATGTCTACCTGCCTCATATATGGAAAAGGAATTTTGGCGTGAAATTTCTTGTGGAAGGACGGAAAGTGTAGAATATGCTTGCGATGTTGAGGGTAGTGCCTTTTCATCTTCTCCATCTGATGAGCTTGGGACAAGTAAATGGAATTTGAAGAATCTTTCTCGGCTGCCCAAGTCCATACTACGCCTGCTGGAAAATCCAATACCGGGAGTAACGGACCCCATGCTTTATATTGGAATGCTGTTTAGTATGTTTGCGTGGCATGTGGAGGATCATTATCTATACAGTATTAATTATCATCATTGTGGGGCATCTAAAACTTGGTATGGCATTCCTGGTCAAGCAGCTTTGCAGTTTGAAAATGTTGTCAGGGAGCATGTATACACCCAGGATATCTTATCAACTGTTGGAGAGGATGGAGCATTTGACGTGCTTCTGGGGAAAACAACGTTGTTTCCACCCAGTATTTTGTTGGATCATAAGGTGCCTGTATACAGAGCTGTCCAGAAACCCGGGGAGTTTGTAATCACCTTCCCCAGAGCATATCATGCTGGATTCAGTCATGGCTTCAATTGTGGTGAAGCAGTAAACTTTGCAATGGGTGATTGGTTCCCCCTGGGTGCTGTTGCCAGCCAGCGGTATGCACTCCTGAACAGGATGCCTCTACTTCCTCATGAAGAGCTTCTATGTAAAGAAGCAATGCTTCTCTATACAAATTCAGAACTTGTAGACCCACATTATGCTTCTGCAGAGTCAACCTCTCATTATTCTATCAAGACTTCTTTTGTGAGTATGATTCGCTTCCAGCACCGCGCTCGGTGGTCTTTGATGAAATCAAGAACATGCACTGGTGTTTCACCAAATTTTCATGGAACCATTCTTTGCAGCTTGTGCAAACGTGACTGCTATATTTCTTATATCAACTGCAATTGTTATGGACATCCAGTGTGTCTTCGTCATGATATCAAATCTCTGAATTTCTCGTGTGGTAGCAACCGTACACTCTTCTCGTGTGAGGATATTTTAGAAATGGAATCTGCAGCTCAGAAATTTGAGCAGGAGTGTGGAACATTGGATGAGATTGGGGGGCAAGCTTATAATGGTGAAGAATTATATTCTTATCCTCTGTTAAATTTATTTAAACGAGATGTTGTGGACGGATACACTCCTTATTGCAAGATAGAAGTGCAGTTGAATTCTGAATTTACTGCTGCGGCTATCTGTCGCTTGGGAGAAAATGAGTGTGTTTCCAGTAGCCAGCCTACACAAAGTTGTATCACTGAAAACCATAGACCTGAACCATCAGATCCATCTCTCTCTTTTGAAGCGTCAACTTTTTGTTCAATTGTAGACTATAATGAAACACTGTCCACCACTAGCCATGTACAAAAAAATTCAAGTTTTGAACAGTCTTCTGAAGTTTCGAACAGGGCGCTTGAATCATCACGTAACAATTGCTCAAGTAAATCTCCAGGCAGTGTACGTGTATCAGAGCTAACGACTGTTGTAGATCGTGAAAGTGATGATTCTGATACAGAAATTTTTAGGGTCAAGCGTCGCCCTCTGAAGCTGGATAAAAAGACCGGGAGCGATGCCACATCTTTAAAACATTTTGCTAGCCAGGATGGCCGCAAAAGATTGAAGAGACTCCAAACAAATGGGAATTCTGAGGGAGTAACGCCATCGTATGGTCGTGGAACTGACAACTCACGTTATAAATTATACCCTTCCAGTACTTACAAGGACTCTGCAGAGAGTGATGCAATTGACAAGTATAGCAGAGGGAGTACTATTCCCATTTCTACTATGTGCCAGAGATTCAGCAAGGAGAAACTAAATAGTAATAGACAGCGCGTCTATGAACTCAACAATCGCAGGAGGGAAAGGTTTCAGCATGAGATGGGAAAGCCCAAAAGGGTACTACATCCACATCCCTCTATGGACACTGGGTCAAAGCGTGTCAAAATTAGAGGCCCAACACCCGGTCGGCCCGATTGA 2943 43.39 MEMHAVSEHCRLQPRRFSLYCRLRVLVAFLRFRSGTSGSRKIWLFLFFVSFENVVRFLLLSLLRLNAPTWTGFGFWIFDLFLTLFLRGGAVSTKRTKTEASKNKTQLRDEMVEGKNCKSREDRNGLALLKLKRLQATNSETANKTSSVKNMMNRSGGDALRVSSTCGVRLLSGNVETFSRSSGMSNERDVFSKRRVDKFEYDDLEWTEKIPECPVYSPSKEEFEDPLVYLQKIAPEASKYGICKIISPLIASVPAGALLSKEKPGFKFTTRVQPFRFAEWDTDDQVTFYMSGRNYSFRDFEKFANKIYARRYSSSGCLPASYMEKEFWREISCGRTESVEYACDVEGSAFSSSPSDELGTSKWNLKNLSRLPKSILRLLENPIPGVTDPMLYIGMLFSMFAWHVEDHYLYSINYHHCGASKTWYGIPGQAALQFENVVREHVYTQDILSTVGEDGAFDVLLGKTTLFPPSILLDHKVPVYRAVQKPGEFVITFPRAYHAGFSHGFNCGEAVNFAMGDWFPLGAVASQRYALLNRMPLLPHEELLCKEAMLLYTNSELVDPHYASAESTSHYSIKTSFVSMIRFQHRARWSLMKSRTCTGVSPNFHGTILCSLCKRDCYISYINCNCYGHPVCLRHDIKSLNFSCGSNRTLFSCEDILEMESAAQKFEQECGTLDEIGGQAYNGEELYSYPLLNLFKRDVVDGYTPYCKIEVQLNSEFTAAAICRLGENECVSSSQPTQSCITENHRPEPSDPSLSFEASTFCSIVDYNETLSTTSHVQKNSSFEQSSEVSNRALESSRNNCSSKSPGSVRVSELTTVVDRESDDSDTEIFRVKRRPLKLDKKTGSDATSLKHFASQDGRKRLKRLQTNGNSEGVTPSYGRGTDNSRYKLYPSSTYKDSAESDAIDKYSRGSTIPISTMCQRFSKEKLNSNRQRVYELNNRRRERFQHEMGKPKRVLHPHPSMDTGSKRVKIRGPTPGRPD 980
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 9041681 9049228 + CmaCh16G011810.1 Cma16g01181 311779

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g01181 980 MobiDBLite consensus disorder prediction 942 966 - -
Cma16g01181 980 SMART JmjN_1 212 255 IPR003349 -
Cma16g01181 980 ProSiteProfiles JmjN domain profile. 213 254 IPR003349 -
Cma16g01181 980 Gene3D Cupin 213 576 - -
Cma16g01181 980 PANTHER LYSINE-SPECIFIC DEMETHYLASE 140 975 - -
Cma16g01181 980 Pfam jmjN domain 214 246 IPR003349 -
Cma16g01181 980 SMART cupin_9 360 530 IPR003347 -
Cma16g01181 980 MobiDBLite consensus disorder prediction 942 980 - -
Cma16g01181 980 Pfam C5HC2 zinc finger 610 661 IPR004198 -
Cma16g01181 980 MobiDBLite consensus disorder prediction 778 808 - -
Cma16g01181 980 ProSiteProfiles JmjC domain profile. 360 530 IPR003347 -
Cma16g01181 980 MobiDBLite consensus disorder prediction 867 886 - -
Cma16g01181 980 Pfam JmjC domain, hydroxylase 390 513 IPR003347 -
Cma16g01181 980 MobiDBLite consensus disorder prediction 856 886 - -
Cma16g01181 980 PANTHER TRANSCRIPTION FACTOR JUMONJI (JMJ) FAMILY PROTEIN / ZINC FINGER (C5HC2 TYPE) FAMILY PROTEIN 140 975 - -
Cma16g01181 980 SUPERFAMILY Clavaminate synthase-like 326 546 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g01181 - - - cmax:111465200 1775.37
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g01181 Cma-Chr16:9041681 Cma18g00207 Cma-Chr18:1129465 2.87E-77 dispersed
Cma16g01181 Cma-Chr16:9041681 Cma19g00217 Cma-Chr19:1475158 0 wgd
Cma16g01181 Cma-Chr16:9041681 Cma06g00632 Cma-Chr6:3109056 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g719 . . . . . . . . . Cmo16g01231 . . . . . Cpe14g00981 . . . . . . . . . . . . . . . Cone8ag0485 . . . Lsi07g01171 . . Cme06g02447 . Blo19g00246 . . Bpe08g00806 . . . . . . . Cma16g01181 . Car16g01115 . . . . . . . . . . . . . . . . . Csa03g00140 Chy06g02167 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001654 1 9 2 2 2 2 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 1 2 2 4 1 70
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36606 PF02373 JmjC 1.50E-39 CL0029 Cma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g01181 Cma_Chr16 FPKM 15.313966 16.102219 3.099979 2.742695 10.709538 8.477207 10.411032 0.495432 0.478445 0.399536