Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g01193 ATGAGTGGCAGTGAGATGGAGAAACCACCAAAAGACAAGGAGACGAAGACACCGCCTCCTACTACCCAGGAGCAGACTTCAACCACAAGCGCCGGCGCAGTTAATCCTGATTGGTCAGGTTTTCAGGCATATTCTCCTATTCCTCCTCATGGTTTCTTGGCATCAAGCCCTCAAGCCCACCCATATATGTGGGGAGTTCAGTTGAGTGCTGTAATGGTTCATGCCATTTCTGATAACTGTTTTTATCTACAGCATATTATGCCTCCTTATGGCACGCCTCCACATCCATATGTTGCAATGTATCCACCTGGTGGCATATACGCTCATCCGTCCATTCCCCCGGGATCATATCCTTTTAGCCCATTTGCAATGCCTTCTCCAAATGGCATCACTGAGGCCTCTGGTAATACCGCAGGCAGTTTGGAGGGAGACGTTAAGCTACCTGAAGTGAAGGAAAAGCTGCCAATTAAAAGATCAAAAGGAAGTTTGGGCAGTTTGAACATGATTACAGGGAAGAATAATGAGCTCGGTAAAACATCTGGAACATCTGCCAATGGAGCATACTCTAAGAGTGCTGAGAGTGCCAGCGAAGGTTCAAGTGAAGGAAGCGATGCCAATTCTCAAAATGAATCACAACCTAAGTTAGGTTCCAGGAAAGACACTTCGGAAGTTGAAGCATCTCAGAATGGTAACTCTATGCATGGTACTCAAAACGGAGGATCTAATACTCAGGCAATGGCTGCCATCCCATTGGCAACTGCTGGGGCCCCGGGTGTCGTTCCTGGTCCCCCAACCAACTTAAATATTGGAATGGACTATTGGGGTGCACCATCCACTATCCCTGCAATGCGTGGAAAGGTTCAATCCGCTCCAGTTGCTGGAGGACTAGTTACCACTGGATCTCGGGATGGCATGCAGTCACAACTTTGGTTGCAGGATGAGAGAGAGATTAAACGACAGAGAAGAAAGCAATCAAATAGAGAATCTGCACGACGTTCCCGGTTACGTAAGCAGGCAGAATGTGACGAATTAGCACACCGAGCTGAAGCATTACAAGAAGAGAATGCCAGTCTTAGGTCTGAAGTGAACCGGATAAGGAGTGAATATGAACAACTACTTTCAGAGAATGCTTCTCTGAAGGAACGACTCAGGGAAGTTCCAGGAAATGAAGAACTAAGGACCAGCAGGAACGGCCAGCACTCGAGTAACGAAACCACTCAACTTACAGAGTCAGCGGTCGTGCAAGTCGGTAACAAGAATTGA 1263 47.35 MSGSEMEKPPKDKETKTPPPTTQEQTSTTSAGAVNPDWSGFQAYSPIPPHGFLASSPQAHPYMWGVQLSAVMVHAISDNCFYLQHIMPPYGTPPHPYVAMYPPGGIYAHPSIPPGSYPFSPFAMPSPNGITEASGNTAGSLEGDVKLPEVKEKLPIKRSKGSLGSLNMITGKNNELGKTSGTSANGAYSKSAESASEGSSEGSDANSQNESQPKLGSRKDTSEVEASQNGNSMHGTQNGGSNTQAMAAIPLATAGAPGVVPGPPTNLNIGMDYWGAPSTIPAMRGKVQSAPVAGGLVTTGSRDGMQSQLWLQDEREIKRQRRKQSNRESARRSRLRKQAECDELAHRAEALQEENASLRSEVNRIRSEYEQLLSENASLKERLREVPGNEELRTSRNGQHSSNETTQLTESAVVQVGNKN 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 9100070 9104393 - CmaCh16G011930.1 Cma16g01193 311791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g01193 420 MobiDBLite consensus disorder prediction 163 215 - -
Cma16g01193 420 MobiDBLite consensus disorder prediction 1 35 - -
Cma16g01193 420 SMART brlzneu 314 378 IPR004827 GO:0003700|GO:0006355
Cma16g01193 420 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 415 IPR044827 GO:0003700|GO:0006355|GO:0043565
Cma16g01193 420 MobiDBLite consensus disorder prediction 19 35 - -
Cma16g01193 420 MobiDBLite consensus disorder prediction 380 420 - -
Cma16g01193 420 Pfam G-box binding protein MFMR 84 113 IPR012900 -
Cma16g01193 420 Pfam G-box binding protein MFMR 2 67 IPR012900 -
Cma16g01193 420 PANTHER BZIP TRANSCRIPTION FACTOR FAMILY PROTEIN 1 415 - -
Cma16g01193 420 MobiDBLite consensus disorder prediction 1 18 - -
Cma16g01193 420 Coils Coil 334 382 - -
Cma16g01193 420 MobiDBLite consensus disorder prediction 317 339 - -
Cma16g01193 420 CDD bZIP_plant_GBF1 319 369 IPR045314 GO:0003700|GO:0006355
Cma16g01193 420 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 321 336 IPR004827 GO:0003700|GO:0006355
Cma16g01193 420 Pfam bZIP transcription factor 314 376 IPR004827 GO:0003700|GO:0006355
Cma16g01193 420 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 316 379 IPR004827 GO:0003700|GO:0006355
Cma16g01193 420 MobiDBLite consensus disorder prediction 156 242 - -
Cma16g01193 420 Pfam Disordered region downstream of MFMR 152 279 - -
Cma16g01193 420 MobiDBLite consensus disorder prediction 392 420 - -
Cma16g01193 420 MobiDBLite consensus disorder prediction 222 242 - -
Cma16g01193 420 Gene3D - 317 371 - -
Cma16g01193 420 SUPERFAMILY Leucine zipper domain 317 373 IPR046347 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g01640 Cma16g01193 CCT
Cma06g00624 Cma16g01193 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01036 Cma-Chr6:6977880 Cma16g01193 Cma-Chr16:9100070 5.67E-07 dispersed
Cma16g01193 Cma-Chr16:9100070 Cma03g00768 Cma-Chr3:5987278 3.43E-57 dispersed
Cma16g01193 Cma-Chr16:9100070 Cma02g01640 Cma-Chr2:9295412 4.98E-171 wgd
Cma16g01193 Cma-Chr16:9100070 Cma06g00624 Cma-Chr6:3042042 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36608 PF16596 MFMR_assoc 2.80E-49 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g01193 K09060 - csv:101206627 681.019