Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma16g01193 | ATGAGTGGCAGTGAGATGGAGAAACCACCAAAAGACAAGGAGACGAAGACACCGCCTCCTACTACCCAGGAGCAGACTTCAACCACAAGCGCCGGCGCAGTTAATCCTGATTGGTCAGGTTTTCAGGCATATTCTCCTATTCCTCCTCATGGTTTCTTGGCATCAAGCCCTCAAGCCCACCCATATATGTGGGGAGTTCAGTTGAGTGCTGTAATGGTTCATGCCATTTCTGATAACTGTTTTTATCTACAGCATATTATGCCTCCTTATGGCACGCCTCCACATCCATATGTTGCAATGTATCCACCTGGTGGCATATACGCTCATCCGTCCATTCCCCCGGGATCATATCCTTTTAGCCCATTTGCAATGCCTTCTCCAAATGGCATCACTGAGGCCTCTGGTAATACCGCAGGCAGTTTGGAGGGAGACGTTAAGCTACCTGAAGTGAAGGAAAAGCTGCCAATTAAAAGATCAAAAGGAAGTTTGGGCAGTTTGAACATGATTACAGGGAAGAATAATGAGCTCGGTAAAACATCTGGAACATCTGCCAATGGAGCATACTCTAAGAGTGCTGAGAGTGCCAGCGAAGGTTCAAGTGAAGGAAGCGATGCCAATTCTCAAAATGAATCACAACCTAAGTTAGGTTCCAGGAAAGACACTTCGGAAGTTGAAGCATCTCAGAATGGTAACTCTATGCATGGTACTCAAAACGGAGGATCTAATACTCAGGCAATGGCTGCCATCCCATTGGCAACTGCTGGGGCCCCGGGTGTCGTTCCTGGTCCCCCAACCAACTTAAATATTGGAATGGACTATTGGGGTGCACCATCCACTATCCCTGCAATGCGTGGAAAGGTTCAATCCGCTCCAGTTGCTGGAGGACTAGTTACCACTGGATCTCGGGATGGCATGCAGTCACAACTTTGGTTGCAGGATGAGAGAGAGATTAAACGACAGAGAAGAAAGCAATCAAATAGAGAATCTGCACGACGTTCCCGGTTACGTAAGCAGGCAGAATGTGACGAATTAGCACACCGAGCTGAAGCATTACAAGAAGAGAATGCCAGTCTTAGGTCTGAAGTGAACCGGATAAGGAGTGAATATGAACAACTACTTTCAGAGAATGCTTCTCTGAAGGAACGACTCAGGGAAGTTCCAGGAAATGAAGAACTAAGGACCAGCAGGAACGGCCAGCACTCGAGTAACGAAACCACTCAACTTACAGAGTCAGCGGTCGTGCAAGTCGGTAACAAGAATTGA | 1263 | 47.35 | MSGSEMEKPPKDKETKTPPPTTQEQTSTTSAGAVNPDWSGFQAYSPIPPHGFLASSPQAHPYMWGVQLSAVMVHAISDNCFYLQHIMPPYGTPPHPYVAMYPPGGIYAHPSIPPGSYPFSPFAMPSPNGITEASGNTAGSLEGDVKLPEVKEKLPIKRSKGSLGSLNMITGKNNELGKTSGTSANGAYSKSAESASEGSSEGSDANSQNESQPKLGSRKDTSEVEASQNGNSMHGTQNGGSNTQAMAAIPLATAGAPGVVPGPPTNLNIGMDYWGAPSTIPAMRGKVQSAPVAGGLVTTGSRDGMQSQLWLQDEREIKRQRRKQSNRESARRSRLRKQAECDELAHRAEALQEENASLRSEVNRIRSEYEQLLSENASLKERLREVPGNEELRTSRNGQHSSNETTQLTESAVVQVGNKN | 420 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
16 | 9100070 | 9104393 | - | CmaCh16G011930.1 | Cma16g01193 | 311791 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma16g01193 | 420 | MobiDBLite | consensus disorder prediction | 163 | 215 | - | - | |
Cma16g01193 | 420 | MobiDBLite | consensus disorder prediction | 1 | 35 | - | - | |
Cma16g01193 | 420 | SMART | brlzneu | 314 | 378 | IPR004827 | GO:0003700|GO:0006355 | |
Cma16g01193 | 420 | PANTHER | G-BOX-BINDING FACTOR 3-RELATED | 1 | 415 | IPR044827 | GO:0003700|GO:0006355|GO:0043565 | |
Cma16g01193 | 420 | MobiDBLite | consensus disorder prediction | 19 | 35 | - | - | |
Cma16g01193 | 420 | MobiDBLite | consensus disorder prediction | 380 | 420 | - | - | |
Cma16g01193 | 420 | Pfam | G-box binding protein MFMR | 84 | 113 | IPR012900 | - | |
Cma16g01193 | 420 | Pfam | G-box binding protein MFMR | 2 | 67 | IPR012900 | - | |
Cma16g01193 | 420 | PANTHER | BZIP TRANSCRIPTION FACTOR FAMILY PROTEIN | 1 | 415 | - | - | |
Cma16g01193 | 420 | MobiDBLite | consensus disorder prediction | 1 | 18 | - | - | |
Cma16g01193 | 420 | Coils | Coil | 334 | 382 | - | - | |
Cma16g01193 | 420 | MobiDBLite | consensus disorder prediction | 317 | 339 | - | - | |
Cma16g01193 | 420 | CDD | bZIP_plant_GBF1 | 319 | 369 | IPR045314 | GO:0003700|GO:0006355 | |
Cma16g01193 | 420 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 321 | 336 | IPR004827 | GO:0003700|GO:0006355 | |
Cma16g01193 | 420 | Pfam | bZIP transcription factor | 314 | 376 | IPR004827 | GO:0003700|GO:0006355 | |
Cma16g01193 | 420 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 316 | 379 | IPR004827 | GO:0003700|GO:0006355 | |
Cma16g01193 | 420 | MobiDBLite | consensus disorder prediction | 156 | 242 | - | - | |
Cma16g01193 | 420 | Pfam | Disordered region downstream of MFMR | 152 | 279 | - | - | |
Cma16g01193 | 420 | MobiDBLite | consensus disorder prediction | 392 | 420 | - | - | |
Cma16g01193 | 420 | MobiDBLite | consensus disorder prediction | 222 | 242 | - | - | |
Cma16g01193 | 420 | Gene3D | - | 317 | 371 | - | - | |
Cma16g01193 | 420 | SUPERFAMILY | Leucine zipper domain | 317 | 373 | IPR046347 | GO:0003700|GO:0006355 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma02g01640 | Cma16g01193 | CCT | |
Cma06g00624 | Cma16g01193 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma06g01036 | Cma-Chr6:6977880 | Cma16g01193 | Cma-Chr16:9100070 | 5.67E-07 | dispersed | |
Cma16g01193 | Cma-Chr16:9100070 | Cma03g00768 | Cma-Chr3:5987278 | 3.43E-57 | dispersed | |
Cma16g01193 | Cma-Chr16:9100070 | Cma02g01640 | Cma-Chr2:9295412 | 4.98E-171 | wgd | |
Cma16g01193 | Cma-Chr16:9100070 | Cma06g00624 | Cma-Chr6:3042042 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
36608 | PF16596 | MFMR_assoc | 2.80E-49 | No_clan | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma16g01193 | K09060 | - | csv:101206627 | 681.019 |