Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g01196 ATGTCGGTCGAAACCGACAGAAGGGGGGGAAAAAACTGGAAGGAACTGGTGAAGAAGATGCTCCCACCTGGAGCATCTCTCCCTGAAAGTGCTAGCGATCTAGATTACTCTATAGCTATGGAGTACGAGGGTCCACCAGTAGTCCATGACGTTCCAAGAATCGAACCGCTTGACGTAAATTCTCGTTCAATTCCAGTTGCTGAACCTCTTTCTGAATCCCAAAGGTCCATTGCAAAGGACGGTCCTCCAACGATTGAACCAATTCCTTTGCCTGTCTCTCGTATTGTTGGCGTCACAAGTTCGCCTACTCAGAGCCCAAGGGCATCAGGAAGTTCAGAGTCTGTAGTATCTGTCTTGCAAAACCATGATTTTTCTTCAGCTTCACCTTCTGTCTCCCCAGCATCAGTTCACAACCCACCTAGCAATCAACCTAAACAAGTAGTTATTGATGCAAGAAGAGCACCTGTTGTCACTTTTAATACTGTTGATCACTCCCATCGAAAAGAACTTGGTGTCGAGAAGCAAGTGTATCCCGAGTACGTAGGAGTTTCGAAAGAGAAAAAGAAAAAAAAAAGTCGGGTATGTTATAGGTGTGGGAAAGGAAAGTGGGAAACAAAAGAGTCATGTCTTGTCTGTGATGCCAAGTATTGCGGCAACTGTGTGCTTAGAGCCATGGGATCGATGCCTGAAGGGCGTAAATGTGTCACTTGCATTGGTGATCCTATAGACGAGTCGAAGAGGTCGAAATTGGGCAAGCATTCGAGGGTCTTATCTCGACTACTTAGTCCTTTGGAAGTGAAGCAGATTATGAAAGCAGAGAAAGAATGTCCTGCTAATCAACTTCGCCCCGAACAGCTGATTGTAAATGGATCACCCCTACGATCTGAAGAGATGGCAGAATTACTTGGATGCCCTCTGCCTCCACAGAAACTGAAACCCGGAAGATATTGGTACGACAAAGAATCTGGTCTCTGGGGAAAGGAAGGAGAAAAACCAGATAAAATCATTAGTTCGAACTTAAGTTTCACCGGCAAACTTAGCCCGCACGCAAGCAATGGGAACACTGAAGTTTACATCAATGGTCGAGAAATCACGAGACTCGAATTAAGGGTGCTTAAGTTGGCAAACGTACAATGCCCACGTGACACCCATTTTTGGGTCTACGACGACGGTCGCTACGAGGAAGAAGGTCAGAACAATATCAGAGGAAATATTTGGGAGAAGGCTTCAACACGCTTTGTATGTGCTTTGTTCTCATTGCCCGTGCCACATGGTCAGCCACCCCATGGAGTGAGAGAAGAGGCTAGCAATTACACAACAGTTCCCAACTACTTTGAGCAACAAAAGAGGATTCAGAAACTTCTTCTCATTGGGATTGAAGGCTCCGGAACTAGCACAATATTTAAGCAGGGAAAATTTTTGTATGGGAACAGATTTACTGAAGAAGAACTTCAAGACATCAAACTTATGATCCAGAGTAATATGTACAAGTATCTTAGCATCTTGCTTGATGGTCGAGAACGCTTCGAGGAGGAATTCATGAACCGAAAAAAGGTTCGAAGTTCCCAAGGAGGTCGAGCTCTCGAAACTGATGGAGAGAGGGAAGCTAGTGAATGTATTTACTCCATCAACCCAAGGTTGAAACATTTTTCCGATTGGCTCCTCGATATCATTGCTACCGGAGATTTGGACGCGTTCTTCCCTGCTGCAACTCGTGAGTACGCTCCATTAGTTGAAGAGCTATGGAAGGATCCTGCAATCCAGGAAACATACAAGAGAAAAGACGAGTTACACTTCCTTCCCGACGTTGCCGAGTACTTCTTAAGCAGGGCAGTGGAGGTTTCAAGCAATGAATATGAACCTTCTGATAGAGATATCCTGTATGCAGAAGGGGTAACCCAAGGGAATGGATTGGCTTTCATGGAATTTTCACTTGATGATCGGAGTCCAATGTCTGAGACCTACACTGATAATCTTGAAGCTCCGCCCCCACCTCTTACTAGATACCAACTTATAAGGGTAAGTGCCAAGGGGATGAATGAAGGGTGCAAATGGGTAGAGATGTTTGAAGATGTTCGAGTTGTCGTCTTCTGCGTTGCGCTTAGTGATTTCGATCAATTGTCTCGTGCCCCAGAAGATAACAGCAGCGGAAACCTATTACAAAACAAGATGATGCAGAGTAAGGAGCTTTTCGAGACAATGGTCCGACACCCTTGCTTCAAAAATACCCCATTCGTGTTGATACTCAACAAATACGATCTCTTTGAAGAGAAAGTAAATCGAGCATCGTTGAATGTCTGCGAATGGTTTAACGATTTCAGCCCTGTGCGACCGTTACATAGCAACCAGTCACTATCTCATCAAGCTTACTACTATATAGCTATGAAATTCAAAGACCTTTATCAATCCATCACAGGTCGTAAGCTTTTCGTGTGGCAAGCTAGAGCAAGGGACCGAGTGACGATTGATGAGGCATTCAAGTATATAAGAGAAGTCGTGAAGTGGGATGAGGAGAAAGAGGGGCCCTACTATGGTGGACCTGAGGATTCCTTCTATAGCACAGATGTGAGCTCATCTCCATTTGTTAGACAACAATGA 2598 44.8 MSVETDRRGGKNWKELVKKMLPPGASLPESASDLDYSIAMEYEGPPVVHDVPRIEPLDVNSRSIPVAEPLSESQRSIAKDGPPTIEPIPLPVSRIVGVTSSPTQSPRASGSSESVVSVLQNHDFSSASPSVSPASVHNPPSNQPKQVVIDARRAPVVTFNTVDHSHRKELGVEKQVYPEYVGVSKEKKKKKSRVCYRCGKGKWETKESCLVCDAKYCGNCVLRAMGSMPEGRKCVTCIGDPIDESKRSKLGKHSRVLSRLLSPLEVKQIMKAEKECPANQLRPEQLIVNGSPLRSEEMAELLGCPLPPQKLKPGRYWYDKESGLWGKEGEKPDKIISSNLSFTGKLSPHASNGNTEVYINGREITRLELRVLKLANVQCPRDTHFWVYDDGRYEEEGQNNIRGNIWEKASTRFVCALFSLPVPHGQPPHGVREEASNYTTVPNYFEQQKRIQKLLLIGIEGSGTSTIFKQGKFLYGNRFTEEELQDIKLMIQSNMYKYLSILLDGRERFEEEFMNRKKVRSSQGGRALETDGEREASECIYSINPRLKHFSDWLLDIIATGDLDAFFPAATREYAPLVEELWKDPAIQETYKRKDELHFLPDVAEYFLSRAVEVSSNEYEPSDRDILYAEGVTQGNGLAFMEFSLDDRSPMSETYTDNLEAPPPPLTRYQLIRVSAKGMNEGCKWVEMFEDVRVVVFCVALSDFDQLSRAPEDNSSGNLLQNKMMQSKELFETMVRHPCFKNTPFVLILNKYDLFEEKVNRASLNVCEWFNDFSPVRPLHSNQSLSHQAYYYIAMKFKDLYQSITGRKLFVWQARARDRVTIDEAFKYIREVVKWDEEKEGPYYGGPEDSFYSTDVSSSPFVRQQ 865
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 9109705 9116390 + CmaCh16G011960.1 Cma16g01196 311794

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g01196 865 SUPERFAMILY Transducin (alpha subunit), insertion domain 479 629 IPR011025 GO:0007165
Cma16g01196 865 PANTHER GTP-BINDING PROTEIN ALPHA SUBUNIT 26 861 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cma16g01196 865 CDD G-alpha 452 836 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cma16g01196 865 MobiDBLite consensus disorder prediction 841 865 - -
Cma16g01196 865 Gene3D - 480 630 IPR011025 GO:0007165
Cma16g01196 865 Gene3D - 647 841 IPR027417 -
Cma16g01196 865 PANTHER EXTRA-LARGE GUANINE NUCLEOTIDE-BINDING PROTEIN 3 26 861 - -
Cma16g01196 865 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 450 835 IPR027417 -
Cma16g01196 865 PRINTS Alpha G protein (transducin) signature 453 468 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cma16g01196 865 PRINTS Alpha G protein (transducin) signature 619 641 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cma16g01196 865 PRINTS Alpha G protein (transducin) signature 692 720 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cma16g01196 865 PRINTS Alpha G protein (transducin) signature 745 754 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cma16g01196 865 SUPERFAMILY FYVE/PHD zinc finger 178 237 IPR011011 -
Cma16g01196 865 MobiDBLite consensus disorder prediction 851 865 - -
Cma16g01196 865 ProSiteProfiles G-alpha domain profile. 450 844 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cma16g01196 865 MobiDBLite consensus disorder prediction 96 145 - -
Cma16g01196 865 SMART galpha_1 446 833 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cma16g01196 865 MobiDBLite consensus disorder prediction 65 145 - -
Cma16g01196 865 Pfam G-protein alpha subunit 448 833 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g01196 - - - csv:101207353 1624.37
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g00618 Cma16g01196 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00371 Cma-Chr9:1539595 Cma16g01196 Cma-Chr16:9109705 1.91E-60 dispersed
Cma16g00555 Cma-Chr16:2852400 Cma16g01196 Cma-Chr16:9109705 1.26E-07 dispersed
Cma16g01196 Cma-Chr16:9109705 Cma20g00879 Cma-Chr20:4206037 0 dispersed
Cma01g00733 Cma-Chr1:3851351 Cma16g01196 Cma-Chr16:9109705 7.43E-07 transposed
Cma01g00746 Cma-Chr1:3993910 Cma16g01196 Cma-Chr16:9109705 0 transposed
Cma16g01196 Cma-Chr16:9109705 Cma06g00618 Cma-Chr6:3013035 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g752 . . Bda06g01242 . . Bpe07g00239 . . Cmo06g00625 Cmo16g01243 . . . . . Cpe14g00990 . . . . . . . . Cla10g00122 Cam10g0120 Cec10g0129 Cco10g0129 Clacu10g0126 Cmu10g0973 Cre10g0383 Cone8ag0500 Cone12ag0501 . . Lsi07g01155 . . Cme06g02435 . . . . . . . Bma12g00240 . . . Cma06g00618 Cma16g01196 Car06g00551 Car16g01126 . . . . . . . . . . . . . . . . . Csa03g00126 Chy06g02179 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002284 3 3 2 2 2 1 3 1 1 2 1 1 3 2 2 3 1 3 3 1 2 2 2 2 2 2 2 4 2 2 62
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g01196 Cma_Chr16 FPKM 22.954796 25.781851 16.605263 16.602751 22.873672 22.824766 23.03055 11.786438 11.315737 11.840708