Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g01197 ATGTTAGTTCTCTTTCTTCCTGTCTCCTTCCGAGAATCCATAGCCGGAGTAGCCATGGCCGCTTTGCTGTACCTCGATTCTCTTCGCAACTCGCATCCTGAGCTCGCTGAATGGTACAATACGCTAGCAGATCTGTACCAGAAGAAGCTTTGGCATCAGCTCACACTTAAGCTTGAGCAGTTCGTCGCTCTCACGGTCTTCCAGGCTGGTGATGCACTGATTCAGTTGTATCACAACTTCATCACTGATTTTGAGACCAAAATCAATCTTCTCAAGCTTGCACATTTTGCTGTGATTGTTTCTCGGCAATATGCAGAGAAAGAAGCTGCCATTAGTTATCTTGAAGGGATAATCGAGAAACTGAGGAGTACTAAAGAGCACCGCATAGAGGAGCCTATCCTTTATATTAAGATGCAAATAGCTATTTTTAAGCTTGAGCAAGGTGACCGAAAAGAGTGCAAGAAACTTTTGGAAGATGGAAAGAGCACTCTTGACAGCATGACTGACATCGATCCATCTGTTTATGCTAGCTATTATTGGGTTTCATCTCAATTTTACAAGTTCCGCCAAGAATTTGCTGAGTTCTATAAAAGTGCTCTTCTTTATCTCGCATATACTTCAGTGGAATCACTCTCAGACTCATTTAAATTGGATTTGGCCTTTGATTTGTCTCTTTCTGCACTTTTGGGAGATAACATCTACAACTTTGGAGAGCTTCTTGCACATCCTATTATCAAAAGTCTGTTGGGCACAAAGGTCGAGTGGCTTTACTACATTCTTCAGGCATTCAATTCTGGTGATTTAGTTCGCTATCAAGAATTATGCCAAGTCCACAATGCAGCTTTAAGGGCTCAACCGGCTTTAGTTGAAAATGAAAAGAAACTATTGGAGAAAATCAATATTCTCTGCCTCATGGAAATTATCTTCAGCCGGTCATCTGAAGATCGAACCATTCCATTGAAGGTTATAGCCGAACGAACAAAACTTTCTATCGAGGATGTTGAGCATCTACTAATGAAGAGCCTGTCTGTCCACCTTATAGAGGGTATCATCGATCAAGTCGAGGGAACGGTCCATGTTTCCTGGGTGCAACCAAGGGTTCTAGGCATTCCACAGATCAAATCCCTGCGAGACCGGCTGGACAGTTGGGTGGATAAAGTGCATTCAACTTTGCTTTCAGTCGAGGCCGAGACGCCTGATCTACTAGCCTCCAGCTTTCTTGAACTATTTTTTAGGAATCAGAAGCCTCTACGTCTTAGTTTTGAAAGTGAGCATGGATTGGAGGAGTTGAGAAACGGACTTAAAGAGTGGTTATTGGACTTCCCTTCTGTATTTGTTACTTTTGTTGCATACAATTGA 1359 42.46 MLVLFLPVSFRESIAGVAMAALLYLDSLRNSHPELAEWYNTLADLYQKKLWHQLTLKLEQFVALTVFQAGDALIQLYHNFITDFETKINLLKLAHFAVIVSRQYAEKEAAISYLEGIIEKLRSTKEHRIEEPILYIKMQIAIFKLEQGDRKECKKLLEDGKSTLDSMTDIDPSVYASYYWVSSQFYKFRQEFAEFYKSALLYLAYTSVESLSDSFKLDLAFDLSLSALLGDNIYNFGELLAHPIIKSLLGTKVEWLYYILQAFNSGDLVRYQELCQVHNAALRAQPALVENEKKLLEKINILCLMEIIFSRSSEDRTIPLKVIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIKSLRDRLDSWVDKVHSTLLSVEAETPDLLASSFLELFFRNQKPLRLSFESEHGLEELRNGLKEWLLDFPSVFVTFVAYN 452
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 9115028 9119018 - CmaCh16G011970.1 Cma16g01197 311795

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g01197 452 Gene3D - 240 361 - -
Cma16g01197 452 SMART PINT_4 290 383 IPR000717 -
Cma16g01197 452 ProSiteProfiles PCI domain profile. 192 365 IPR000717 -
Cma16g01197 452 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 13 HOMOLOG B 19 403 - -
Cma16g01197 452 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 13 19 403 IPR035298 -
Cma16g01197 452 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 290 383 - -
Cma16g01197 452 Pfam PCI domain 256 361 IPR000717 -
Cma16g01197 452 SUPERFAMILY Winged helix DNA-binding domain 292 366 IPR036390 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g01197 K03039 PSMD13, RPN9; 26S proteasome regulatory subunit N9 - csv:101208086 700.279
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02806 Cma-Chr4:18786488 Cma16g01197 Cma-Chr16:9115028 2.13E-06 dispersed
Cma15g00229 Cma-Chr15:1130082 Cma16g01197 Cma-Chr16:9115028 4.19E-06 dispersed
Cma16g01197 Cma-Chr16:9115028 Cma06g00617 Cma-Chr6:3009478 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g757 . . . . . Bpe07g00240 . . . Cmo16g01244 . . . . . Cpe14g00991 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma12g00241 . . . . Cma16g01197 . Car16g01127 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006085 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g01197 Cma_Chr16 FPKM 39.953712 46.451805 35.034252 40.377644 27.052877 27.785593 27.907019 74.008018 70.171028 82.497528