Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g01201 ATGGCAACAATCTCTACAGCCAAGCCCCTAAACTACACAAATTCAGTCTTCTCTTCATCAAGAACAAGCTTAGGACGTCACCAAGAACAGGTAATTTTCTTCACAACAGGCAAACAAGCCAGCAAGAGAGGCAAAGCCAGCACAACCCCATGGCTGATAACCTGCTCAGCAGGCGACCAACAGACAGTTGTGATCGGTCTAGCAGCAGATTCAGGGTGTGGGAAGAGCACTTTCATGAGGAGGCTAACCAGTGTGTTTGGAGGTGCAGCAAAGCCACCAAGAGGTGGAAATCCAGACTCCAATACACTCATAAGTGACACTACAACTGTGATATGTTTAGATGATTACCATTCGTTGGATAGAACTGGAAGAAAAGAGAAGGGAGTTACTGCACTTGACCCAAGAGCCAATGATTTTGATCTCATGTATGAGCAAGTTAAGGCTCTCAAAGATGGAATTGCAGTTGAGAAGCCTATTTATAATCATGTCACTGGTCTTCTTGATCCACCTGAGCTTATTAAGCCCCCTAAGATCCTTGTCATTGAAGGCCTACACCCAATGTATGATTCACGAGTTAGGGATCTTTTAGACTTCAGCATTTACTTGGATATCAGCAACGAGGTCAAATTCGCTTGGAAGATTCAGAGAGACATGGCAGAGAGAGGTCACAGCCTCGAGAGTATCAAAGCAAGCATCGAAGCGCGAAAGCCAGATTTCGACGCGTATATCGATCCGCAGAAGCAATTCGCCGATGCGGTGATCGAAGTGCTGCCGACGCGATTGATTCCAAATGACTACGAAGGGAAAATTCTTAGGGTTAGATTGATAATGAGAGAAGGAATCGAGCATTTCAATCCAGTTTACCTGTTCGATGAAGGCTCTACGATCTCGTGGATTCCTTGTGGGAGAAAGCTTACATGTTCTTATCCTGGAATCAGACTATCCTGTGGCCCTGAAACTTACTTCGGTCATGAGGTAACTGTATTGGAGATGGATGGGCAATTTGATAAATTGGATGAGCTTATATATGTAGAGAGCCATCTAAGCAACATTTCCACCAAATTTTATGGTGAAATTACACAACAAATATTGGAGCATTCTGAATTTCCAGGAAGCAATAATGGAACAGGCCTTTTTCAGACCATCATTGGCTTGAAAATTAGAGACATTTATCACCAAATTATAGCCTCCAAACAACTATCTCAAACTCAATCAGCAAAGGCTTAA 1227 43.28 MATISTAKPLNYTNSVFSSSRTSLGRHQEQVIFFTTGKQASKRGKASTTPWLITCSAGDQQTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPRGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANDFDLMYEQVKALKDGIAVEKPIYNHVTGLLDPPELIKPPKILVIEGLHPMYDSRVRDLLDFSIYLDISNEVKFAWKIQRDMAERGHSLESIKASIEARKPDFDAYIDPQKQFADAVIEVLPTRLIPNDYEGKILRVRLIMREGIEHFNPVYLFDEGSTISWIPCGRKLTCSYPGIRLSCGPETYFGHEVTVLEMDGQFDKLDELIYVESHLSNISTKFYGEITQQILEHSEFPGSNNGTGLFQTIIGLKIRDIYHQIIASKQLSQTQSAKA 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 9129085 9132389 + CmaCh16G012010.1 Cma16g01201 311799

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g01201 408 PANTHER PHOSPHORIBULOKINASE 6 408 - -
Cma16g01201 408 PANTHER URIDINE KINASE 6 408 - -
Cma16g01201 408 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 61 333 IPR027417 -
Cma16g01201 408 Pfam Phosphoribulokinase / Uridine kinase family 64 262 IPR006083 GO:0005524|GO:0016301
Cma16g01201 408 PRINTS Phosphoribulokinase family signature 69 86 IPR006082 GO:0005524|GO:0005975|GO:0008974
Cma16g01201 408 PRINTS Phosphoribulokinase family signature 178 196 IPR006082 GO:0005524|GO:0005975|GO:0008974
Cma16g01201 408 PRINTS Phosphoribulokinase family signature 213 230 IPR006082 GO:0005524|GO:0005975|GO:0008974
Cma16g01201 408 PRINTS Phosphoribulokinase family signature 231 254 IPR006082 GO:0005524|GO:0005975|GO:0008974
Cma16g01201 408 Gene3D - 59 285 IPR027417 -
Cma16g01201 408 CDD PRK 64 353 - -
Cma16g01201 408 ProSitePatterns Phosphoribulokinase signature. 213 226 IPR006082 GO:0005524|GO:0005975|GO:0008974
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g01201 K00855 PRK, prkB; phosphoribulokinase [EC:2.7.1.19] - csv:101208330 750.74
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma02g01644 Cma16g01201 CCT
Cma02g01644 Cma16g01201 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g01201 Cma-Chr16:9129085 Cma11g01493 Cma-Chr11:9822021 4.79E-14 dispersed
Cma16g01201 Cma-Chr16:9129085 Cma19g00207 Cma-Chr19:1366651 0 wgd
Cma16g01201 Cma-Chr16:9129085 Cma02g01644 Cma-Chr2:9321347 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g779 . . . . . . Bma07g00905 . . Cmo16g01248 Cma02g01644 . Car02g01402 . . . Cpe05g00149 . . . . . . . . . . . . . . . . . . Lsi07g01150 . . Cme06g02430 Blo03g00891 . Bda07g00068 . . Bpe11g00307 . . Sed01g4150 Cmo02g01690 Cmo19g00223 . Cma16g01201 . Car16g01131 . Cpe15g00181 Bhi05g00425 Tan07g2037 Cmetu06g0105 Lac11g2460 Hepe06g0978 . Lcy12g1984 . . . . . . . . Csa03g00122 Chy06g02183 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002153 2 2 2 2 2 2 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 2 2 2 2 2 64
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g01201 Cma_Chr16 FPKM 0.139127 0.0 34.330467 32.035774 66.824181 71.658569 67.616447 3.544302 3.564616 2.887616