Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g01202 ATGGCGACTCTCGCGGATATTGGAGTTTCCGCCTTAATCAATATCATCACTGCGTTTGTGTTCCTTCTTGCTTTTGCGATTCTGCGGATTCAACCGATCAACGACAGAGTTTATTTTCCGAAATGGTACATCAATGGCGGACGAAATAGCCCTCGCGGCTCCGGAAGTTCTGTGCGGAAATATGTTAATCTCAACATTTGGACTTACTTCACTTTCTTGAAATGGATGCCGGCGGCTTTGAAGATGAGCGAAGATGAGATTATTAGCCATGCTGGATTTGATTCTGCTGTTTTTCTCAGGATTTATACTCTCGGGTTGAAGATATTCTTCCCAATAGCTATTGTTGCGCTACTTGTTCTCATCCCAGTCAATGTGTCTAGTGGGACACTCTCCTTCCTGCGGAAAGAATTGGTTGTAAGCAACATTGATAAGCTTTCAATCTCCAATGTTCGTCCTCATTCTATAAGGTTTTTTGCTCATATAGGATTGGAGTATTTGTTTACCCTATGGATTTGTTTCATGCTTTACAAAGAATATGACAATGTAGCACGAATGAGATTGAATTTCTTGGCGTCGCAACGTAGATGTGCTGATCAATTTACTGTGTTGGTTAGAAACGTACCACGTTCATCGGGTCGCTCGAACTCAGATATAGTTGATCAGTACTTCCACAAAAATCATCCCCAACACTATCTTTCTCATCAGGCTGTATATAATGCCAACAAGCTTGCTAAACTTGCAAAAAAGAGAGCAAGGCTCCAGAACTGGTTGGACTACAATCTCTTGAAGTTCGAACGGCACCCCGATCAGAGACCAACTCGAAGGGCAGGATGGTTTGGACTTTGCGGTAAACGAGTCGACTCGATCGAGTATTACAAACGACAAATGAAGGATCTCGATGCCCGAATGGCATTGGAGAGGCCGAAAATTGTCAAAGATCCGAAAGCAATATTGCCTGTTTCTTTTGTTTCGTTTAAGTCTCGATGGGGTGCTGCCGTTTGTGCACAGACTCAGCAGAGTAAGAATCCCACGTTATGGCTCACTAATTGGGCTCCTGAGCCTCATGATGTTTATTGGCAGAATTTGGCTATACCATTTGTTTCTGTTAGCATCAGAAAACTACTCATATCGTTGTCGGTTTTCGCTCTCGTGTTCTTCTATATGATACCGATTGCGTTCGTACAATCACTTGCCAATTTGGAAGGTCTCGAACGAGTGGCTCCTTTCCTAAGACCCGTCATAGAATTGAAGCTCGTAAAATCGTTTCTACAGGGCTTCCTTCCTGGTTTGGCTCTCAAAATCTTTCTATTTATACTGCCAAAAGTTCTAATGATCATGTCCAAAATTGAGGGGCATGTAGCAGTTTCTATGCTGGAAAGAAGGGCAGCGGCTAAGTACTATTACTTCATGCTGGTAAATGTGTTCTTGGGAAGTATTGTGACTGGTACAGCTTTTGAGCAACTGGATGCCTTCATTCACCAATCTCCTACACAAATTCCTCGGACAATCGGAGTTTCCATACCGATGAAGGCGACGTTCTTCATTACGTACATAATGGTCGATGGATGGGCCGGAATGGCGAGCGAGATTCTTCGATTGAAACCGTTGGTCATCTTTCATCTCAAGAATCTCTTTTTGGTGAAAACTGATAGAGATAGAGAGAAGGCAATGAACCCAAAAGGTGTGGATTTTCCTGAAACTTTACCAACCTTACAATTGTACTTTCTACTCGGAATTGTCTACGCCGTCGTCACCCCGATTCTTCTCCCGTTTATACTCGTCTTCTTCGCGTTTGCATACTTGGTTTACCGACATCAGATCATCAATGTATATAATCAGCAATATGAGAGTGTTGGTGCCTTTTGGCCCCATGTCCATGGCCGCATCATAGCAAGCTTGTTGATATCTCAGTTACTTTTATTGGGCTTGCTCAGTACAAAAAAGGCAGCCAATTCTACTCCCTTGCTCGTCGCCTTACCGATATTGACATTTTTCTTCCACAAGTACTGCAAGAACCGGTTCGAACCCGCCTTTCGTAAATACCCTCTCGAGGAAGCAATGGCCAAAGATACAATGGAGCGGAGCACGGAACCTGACCTCGACGTAAAAGCATTCTTATCAGATGCATACTTGCATCCAATTTTCAGGTCTGTAGAGGAAGAAGAATTAGCCGAGATTAAAGTTGAGAAACAAAAATCTCCAATACAAGAAGCAACTTGTTCATGA 2226 43.13 MATLADIGVSALINIITAFVFLLAFAILRIQPINDRVYFPKWYINGGRNSPRGSGSSVRKYVNLNIWTYFTFLKWMPAALKMSEDEIISHAGFDSAVFLRIYTLGLKIFFPIAIVALLVLIPVNVSSGTLSFLRKELVVSNIDKLSISNVRPHSIRFFAHIGLEYLFTLWICFMLYKEYDNVARMRLNFLASQRRCADQFTVLVRNVPRSSGRSNSDIVDQYFHKNHPQHYLSHQAVYNANKLAKLAKKRARLQNWLDYNLLKFERHPDQRPTRRAGWFGLCGKRVDSIEYYKRQMKDLDARMALERPKIVKDPKAILPVSFVSFKSRWGAAVCAQTQQSKNPTLWLTNWAPEPHDVYWQNLAIPFVSVSIRKLLISLSVFALVFFYMIPIAFVQSLANLEGLERVAPFLRPVIELKLVKSFLQGFLPGLALKIFLFILPKVLMIMSKIEGHVAVSMLERRAAAKYYYFMLVNVFLGSIVTGTAFEQLDAFIHQSPTQIPRTIGVSIPMKATFFITYIMVDGWAGMASEILRLKPLVIFHLKNLFLVKTDRDREKAMNPKGVDFPETLPTLQLYFLLGIVYAVVTPILLPFILVFFAFAYLVYRHQIINVYNQQYESVGAFWPHVHGRIIASLLISQLLLLGLLSTKKAANSTPLLVALPILTFFFHKYCKNRFEPAFRKYPLEEAMAKDTMERSTEPDLDVKAFLSDAYLHPIFRSVEEEELAEIKVEKQKSPIQEATCS 741
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 9131910 9139993 - CmaCh16G012020.1 Cma16g01202 311800

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g01202 741 PANTHER PROBABLE MEMBRANE PROTEIN DUF221-RELATED 2 734 IPR045122 GO:0005227
Cma16g01202 741 Pfam Cytosolic domain of 10TM putative phosphate transporter 199 361 IPR027815 -
Cma16g01202 741 Pfam Late exocytosis, associated with Golgi transport 7 178 IPR032880 -
Cma16g01202 741 Pfam Calcium-dependent channel, 7TM region, putative phosphate 372 644 IPR003864 GO:0016020
Cma16g01202 741 PANTHER TO DEHYDRATION PROTEIN, PUTATIVE, EXPRESSED-RELATED 2 734 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g01202 K21989 TMEM63, CSC1; calcium permeable stress-gated cation channel - csv:101207845 1280.0
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g00614 Cma16g01202 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00419 Cma-Chr13:4723968 Cma16g01202 Cma-Chr16:9131910 0 dispersed
Cma16g01202 Cma-Chr16:9131910 Cma18g00567 Cma-Chr18:3748442 0 dispersed
Cma03g00657 Cma-Chr3:5532074 Cma16g01202 Cma-Chr16:9131910 6.66E-15 transposed
Cma04g01679 Cma-Chr4:8450097 Cma16g01202 Cma-Chr16:9131910 7.41E-142 transposed
Cma16g01202 Cma-Chr16:9131910 Cma06g00614 Cma-Chr6:2993687 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g784 . . Bda06g01235 . . Bpe07g00244 Bma07g01005 . Cmo06g00621 Cmo16g01249 . . . . . Cpe14g00994 . . . . . . . . Cla10g00118 Cam10g0115 Cec10g0124 Cco10g0124 Clacu10g0121 Cmu10g0968 Cre10g0378 . . . . Lsi07g01149 . . Cme06g02425 . . . . . . . Bma12g00247 . . . Cma06g00614 Cma16g01202 Car06g00547 Car16g01132 . . . . . . . . . . . . . . . . . Csa03g00119 Chy06g02185 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008449 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 3 1 1 1 1 1 1 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g01202 Cma_Chr16 FPKM 1.246674 1.660139 1.176326 1.260513 2.072223 1.729708 1.864597 2.13517 2.685143 2.850347