Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g01211 ATGTTTACATGCATAGCATGTACGAAACAGACAGACGACGGGGGTGAGGATGGGGCTGCGCGTGGTAGTGGCACGCCTAGTACAAAGGAAGCCGTCAAAAGCCTGACAACACAGATTAAGGACATGGCGTTGAAATTCTCCGGTGCTTATAGACAGTGCAAACCCTGCACAGGCTCCAGTAGCTATAAGAAAGGACAGCGACCTTACCCAGATTTTGACACTGCTTCAGAAGGGGTTCCATACCCCTACATAGGAGGGGCAAGTGCAAGCTCAACCCCTGCCTGGGACTTCCCTCGTGTTAATCGCCATCCACATACCAGATCTGACTCTAGATTTAAAGGGGTCTTCCGAGGAGATCAGACTCCTGGAGCCGATTCCTCCATATCAGCATGTGATGTGGTGCTCGAGGATGACGATGAGTCGAAAGAGTGGATGGCACAGGTGGAGCCTGGTGTTCACATCACTTTTGTGTCCCTACCCAATGGAGGCAATGATTTAAAACGAATTCGTTTCAATCGAGAAATGTTTAACAAATGGCAAGCTCAGCGTTGGTGGGGCGAGAACTATGACAGAATAACGGAGCTCTATAATGTCCAGAGATTCAACCAGCAAGCTCTTCATACGCCACCAAGAACTGAGGACGGGAGGGATTCTTCTTACTCAAAGATGGGAAGGGATAGTCCGATGACTTCAGGGAACAAAGATTGGACGCCAAGAAACTATAAACCTTCTGGGAGTAAAGGATTTCCATCTGACCAGCATTTTGACCAAGGAAGCAGTCACCATTATGCAGGTTCAAGTGCCTATCCAGCAGGTAGCGCGAAAGGCGACATGTCGTCTATGGAAGCATCACGCACAACTACTTCTTCTAGAGACGAGCCTTCAATTTCCATTAGCAATGCAAGCGACATCGAGGCGGAGTGGGTCGAGGAAGATGATCCTGGGGTCTATATAACTATCAGGCAGCTTGTTGATGGCACTAGAGAGCTTCGTCGTGTCAGATTCAGCCGTGAAAAGTTCGGGGAAATGAACGCGAAGCAATGGTGGGATGAGAACAGGGAAAGGATCCAAGCTCAATACCTTTAA 1086 48.8 MFTCIACTKQTDDGGEDGAARGSGTPSTKEAVKSLTTQIKDMALKFSGAYRQCKPCTGSSSYKKGQRPYPDFDTASEGVPYPYIGGASASSTPAWDFPRVNRHPHTRSDSRFKGVFRGDQTPGADSSISACDVVLEDDDESKEWMAQVEPGVHITFVSLPNGGNDLKRIRFNREMFNKWQAQRWWGENYDRITELYNVQRFNQQALHTPPRTEDGRDSSYSKMGRDSPMTSGNKDWTPRNYKPSGSKGFPSDQHFDQGSSHHYAGSSAYPAGSAKGDMSSMEASRTTTSSRDEPSISISNASDIEAEWVEEDDPGVYITIRQLVDGTRELRRVRFSREKFGEMNAKQWWDENRERIQAQYL 361
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
16 9181602 9187627 + CmaCh16G012110.1 Cma16g01211 311809
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cma16g01211 361 MobiDBLite consensus disorder prediction 203 299 - -
Cma16g01211 361 Pfam Transcription factor BRX N-terminal domain 23 56 IPR027988 -
Cma16g01211 361 MobiDBLite consensus disorder prediction 11 30 - -
Cma16g01211 361 MobiDBLite consensus disorder prediction 223 266 - -
Cma16g01211 361 ProSiteProfiles BRX domain profile. 306 361 IPR013591 -
Cma16g01211 361 ProSiteProfiles BRX domain profile. 142 197 IPR013591 -
Cma16g01211 361 MobiDBLite consensus disorder prediction 279 299 - -
Cma16g01211 361 Pfam Transcription factor regulating root and shoot growth via Pin3 142 196 IPR013591 -
Cma16g01211 361 Pfam Transcription factor regulating root and shoot growth via Pin3 305 360 IPR013591 -
Cma16g01211 361 PANTHER BREVIS RADIX-LIKE PROTEIN-RELATED 1 361 - -
Cma16g01211 361 PANTHER PROTEIN BREVIS RADIX-LIKE 1 1 361 IPR044532 -
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Cma06g00605 Cma16g01211 CST
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g01211 Cma-Chr16:9181602 Cma17g00699 Cma-Chr17:5775424 7.75E-102 dispersed
Cma16g01211 Cma-Chr16:9181602 Cma06g00605 Cma-Chr6:2928656 0 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g01211 - - csv:101210860 715.301