Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma16g01211 | ATGTTTACATGCATAGCATGTACGAAACAGACAGACGACGGGGGTGAGGATGGGGCTGCGCGTGGTAGTGGCACGCCTAGTACAAAGGAAGCCGTCAAAAGCCTGACAACACAGATTAAGGACATGGCGTTGAAATTCTCCGGTGCTTATAGACAGTGCAAACCCTGCACAGGCTCCAGTAGCTATAAGAAAGGACAGCGACCTTACCCAGATTTTGACACTGCTTCAGAAGGGGTTCCATACCCCTACATAGGAGGGGCAAGTGCAAGCTCAACCCCTGCCTGGGACTTCCCTCGTGTTAATCGCCATCCACATACCAGATCTGACTCTAGATTTAAAGGGGTCTTCCGAGGAGATCAGACTCCTGGAGCCGATTCCTCCATATCAGCATGTGATGTGGTGCTCGAGGATGACGATGAGTCGAAAGAGTGGATGGCACAGGTGGAGCCTGGTGTTCACATCACTTTTGTGTCCCTACCCAATGGAGGCAATGATTTAAAACGAATTCGTTTCAATCGAGAAATGTTTAACAAATGGCAAGCTCAGCGTTGGTGGGGCGAGAACTATGACAGAATAACGGAGCTCTATAATGTCCAGAGATTCAACCAGCAAGCTCTTCATACGCCACCAAGAACTGAGGACGGGAGGGATTCTTCTTACTCAAAGATGGGAAGGGATAGTCCGATGACTTCAGGGAACAAAGATTGGACGCCAAGAAACTATAAACCTTCTGGGAGTAAAGGATTTCCATCTGACCAGCATTTTGACCAAGGAAGCAGTCACCATTATGCAGGTTCAAGTGCCTATCCAGCAGGTAGCGCGAAAGGCGACATGTCGTCTATGGAAGCATCACGCACAACTACTTCTTCTAGAGACGAGCCTTCAATTTCCATTAGCAATGCAAGCGACATCGAGGCGGAGTGGGTCGAGGAAGATGATCCTGGGGTCTATATAACTATCAGGCAGCTTGTTGATGGCACTAGAGAGCTTCGTCGTGTCAGATTCAGCCGTGAAAAGTTCGGGGAAATGAACGCGAAGCAATGGTGGGATGAGAACAGGGAAAGGATCCAAGCTCAATACCTTTAA | 1086 | 48.8 | MFTCIACTKQTDDGGEDGAARGSGTPSTKEAVKSLTTQIKDMALKFSGAYRQCKPCTGSSSYKKGQRPYPDFDTASEGVPYPYIGGASASSTPAWDFPRVNRHPHTRSDSRFKGVFRGDQTPGADSSISACDVVLEDDDESKEWMAQVEPGVHITFVSLPNGGNDLKRIRFNREMFNKWQAQRWWGENYDRITELYNVQRFNQQALHTPPRTEDGRDSSYSKMGRDSPMTSGNKDWTPRNYKPSGSKGFPSDQHFDQGSSHHYAGSSAYPAGSAKGDMSSMEASRTTTSSRDEPSISISNASDIEAEWVEEDDPGVYITIRQLVDGTRELRRVRFSREKFGEMNAKQWWDENRERIQAQYL | 361 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 16 | 9181602 | 9187627 | + | CmaCh16G012110.1 | Cma16g01211 | 311809 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma16g01211 | 361 | MobiDBLite | consensus disorder prediction | 203 | 299 | - | - | |
| Cma16g01211 | 361 | Pfam | Transcription factor BRX N-terminal domain | 23 | 56 | IPR027988 | - | |
| Cma16g01211 | 361 | MobiDBLite | consensus disorder prediction | 11 | 30 | - | - | |
| Cma16g01211 | 361 | MobiDBLite | consensus disorder prediction | 223 | 266 | - | - | |
| Cma16g01211 | 361 | ProSiteProfiles | BRX domain profile. | 306 | 361 | IPR013591 | - | |
| Cma16g01211 | 361 | ProSiteProfiles | BRX domain profile. | 142 | 197 | IPR013591 | - | |
| Cma16g01211 | 361 | MobiDBLite | consensus disorder prediction | 279 | 299 | - | - | |
| Cma16g01211 | 361 | Pfam | Transcription factor regulating root and shoot growth via Pin3 | 142 | 196 | IPR013591 | - | |
| Cma16g01211 | 361 | Pfam | Transcription factor regulating root and shoot growth via Pin3 | 305 | 360 | IPR013591 | - | |
| Cma16g01211 | 361 | PANTHER | BREVIS RADIX-LIKE PROTEIN-RELATED | 1 | 361 | - | - | |
| Cma16g01211 | 361 | PANTHER | PROTEIN BREVIS RADIX-LIKE 1 | 1 | 361 | IPR044532 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cma06g00605 | Cma16g01211 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma16g01211 | Cma-Chr16:9181602 | Cma17g00699 | Cma-Chr17:5775424 | 7.75E-102 | dispersed | |
| Cma16g01211 | Cma-Chr16:9181602 | Cma06g00605 | Cma-Chr6:2928656 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma16g01211 | - | - | csv:101210860 | 715.301 |