Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g01214 ATGGACTTTATATTCAGAGGAATGAATGATAAGTCATCCGAGTGCTACTCTAATAATGAAATGGACATTCAGAGATGCCCTTTCCTCAGGAATATCAATAAACCAACCTGCTTTTCCTTCTCCACCATGAATTTCACCTTCCCGGTTCGGGGAGCGAAAGGGCCAATTTTTGAGGATGGTCCTAATTTTGACACAGCGTTTAAGCTCTTTCATGGTAAAGATGGGGTTGTTCCACTATCTGAGAAATCCAGCTTTGAGACCTTATTGCCAGAACCAGAGACTGCTCCTCATTTCAACCCCCTGGCAGCAAAAGCTGCAACCATCAGTCTGTCGGCTTTCGGACCGGGAGGGCCATTCAGCTTTGGGAGCTTCTCTGAGAAATGGAAGAAACAAAAGTCTGAGGCTTCCAACAAGAAAGATCATTCGTCACAGAAAAAAGGAGGTTCATCGAAGCACGAGGCTCTGGGAAGTGAGTGGCTGGAAACAGGGAACTGCCCAATTGCCAAGTCTTTTAGAGCTGTTAGCGGAGTCCTCCCTCTTGTTGCAACAGCTTTTCAGCCACCCCCTGGTATGAAGCTTAAGTGCCCGCCTGCTATAGTCGCTGCCCGAGCTGCCCTTGCTCGTACAGCATTCGTGAAAAATCTGCGTCCTCAACCGCTTCCTTCAAAAATGCTCGTCATTGCGGCCTTAGGCATGGCAGCAAACGTTCCTCTTGGTATATGGAGGGAGCACACTAAGAAGTTTTCATTTTCATGGTTTGTGGCAATTCATGCAGCTGTACCCTTCATTGGCATGCTTCGGAAATGTGTCTTGATGCCAAAGACAGCCATGGCAATGACCATTGCAGCTTCTATACTAGGGCAGGTTATTGGTTCGAGGGCTGAACGTATGCGACTGAAAGCTATTGCCGAGAAGGGGAAGGCAACGACAGTTATACCAACGCTAGATACTACTCCAAGCTATGAGTTAACCCAGGTTGATGCCATTGTAGGTGGTCGTTGTGGTGTTGAAAGAAGGGTGTTCGATCCTCTCCAGAAGAATGGTAGGCAGACGTCAACCCCAGCAAATGTATGCTCTTAA 1080 47.59 MDFIFRGMNDKSSECYSNNEMDIQRCPFLRNINKPTCFSFSTMNFTFPVRGAKGPIFEDGPNFDTAFKLFHGKDGVVPLSEKSSFETLLPEPETAPHFNPLAAKAATISLSAFGPGGPFSFGSFSEKWKKQKSEASNKKDHSSQKKGGSSKHEALGSEWLETGNCPIAKSFRAVSGVLPLVATAFQPPPGMKLKCPPAIVAARAALARTAFVKNLRPQPLPSKMLVIAALGMAANVPLGIWREHTKKFSFSWFVAIHAAVPFIGMLRKCVLMPKTAMAMTIAASILGQVIGSRAERMRLKAIAEKGKATTVIPTLDTTPSYELTQVDAIVGGRCGVERRVFDPLQKNGRQTSTPANVCS 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 9197433 9201566 + CmaCh16G012140.1 Cma16g01214 311812

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g01214 359 MobiDBLite consensus disorder prediction 130 152 - -
Cma16g01214 359 PANTHER PROTEIN, PUTATIVE-RELATED 1 348 - -
Cma16g01214 359 MobiDBLite consensus disorder prediction 130 155 - -
Cma16g01214 359 PANTHER PROTEIN, PUTATIVE-RELATED 1 348 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g01214 - - - mcha:111014867 610.912
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02590 Cma-Chr4:17740961 Cma16g01214 Cma-Chr16:9197433 2.53E-138 dispersed
Cma16g01214 Cma-Chr16:9197433 Cma15g00445 Cma-Chr15:1978044 1.11E-135 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g885 . . . . . . . Bma14g00113 . Cmo16g01259 . . . . . Cpe14g01002 . . . . . . . . Cla10g00109 Cam10g0104 Cec10g0111 Cco10g0113 Clacu10g0108 Cmu10g0956 Cre10g0367 . . . . Lsi07g01138 . . Cme06g02414 Blo03g00842 . Bda07g00137 . . . . . . . . . Cma16g01214 . Car16g01141 . . . . . . . . . . . . . . . . . Csa03g00108 Chy06g02197 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011057 1 3 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 3 1 0 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g01214 Cma_Chr16 FPKM 23.4 28.98501 57.212215 57.966156 29.331354 27.319292 29.546507 59.256184 57.93029 55.022144