Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g01216 ATGGCAGCATCAATGGCGCCTTTTAAGCTGACGGAAGGAGCAGTGATGGTGATATGCAAGCGAGAATCGTCGGAAGAGACGTTCCAGCCGGTTGTACAAGTAATTGACTTAAAATTTGTTAACACTACGCAACAATCGGGCAGCGAGAGGTACAGATTGTTGCTTTCTGATGGAACTCATTACCAGCAAGGAATGCTGGGCACTCAGCTCAATGGATTGGTTAAGTCCGGGAAGTTACAGAAAGGTTCCATCGTTCAATTGCGGCAGTATGTTTGTAATCCCGTTCAAGAACGCCTAATTATAATCGTCATTGAGTTGGATGTGATAAAGGAAATGTGTGACTTTATTGGCGAGCCTGTTCCAGCAACAAGATCAGTATCAGCCGCATTTAGTGGAAACCCTCAATCCTCTGTGGGGGCTTCATCCGGCAGCGGAATAGTTGGTAATGTGAATGTATCTGGTGCGTCTTTTGAACAGCCTAAAGTGAATCAATCACAAGTACCGCATGTGGGATTTCATTTTAATACTCCTAATTCTGGAACAAGGTTTAATGGTTCATCTCCTGTAACTGGGTCATATGGTGATCAGAAGATGGCATACCACAACAATGGATCGGATATTCCCAGGTCACCTCTAAATGCTTATGCTTATGCCCCTCCTCAGCCAATACATCAGCAGCCACCTTCAATGTACAGTAATAGGGGAGGACCGGTAGCAAAAAATGAAGCTCCCCCAAGGATAATGCCTATTACTGCTCTGAACCCTTACCAAGGAAGGTGGACAATAAAGGCTCGAGTTACTTCGAAAGGAGAACTTAGAGACTACAATAATCCTCGTGGAGATGGGAAAGTGTTTTCATTTGATCTACTTGATGCATACGGTGGAGAAATACGAGCAACATGCTTCGATATGGTAGCTGATCAGTTTTACAACCAGATTGAATCGGGTAACGTATACTTCATTTCTAAAGGAAGCTTGAAACCTGCACAGAAGAACTATAACCATCTCAATAATGACTTTGAAATATTTCTTGAAAACACATCAACAATCCAACCTTGCTTTGAGGATGACCAATCAATCCCCCATCAGCAGTTTCATTTCCATCACATTAGTGAGATTGAGGGCATGGACAGCAACAGTGTTGTAGATGTAATTGGTGTTGTTTCTTCCATTAATCCTGCAACGTCTCTCATGAGAAAAAATGGTACTGAGACTCAGAAGAGATCCCTTCAGTTGAAAGATATGTCTGGCCGAAGTGTTGAATTGACTCTTTGGGGAAACTTTTGTCAAGCAGAAGGGCAAAAATTGCAAAACATGTGCGACTCGGGGTTGTTCCCAGTTTTGGCTGTGAAATCTGGTAGAGTGAGCAACTTCAATGGGAAGGCGGTGGGAACCATTTCAACAAGTCAGCTTTTCGTAGAGCCAGATTTCCCCGAGGCTCGTACATTAAGAGGGTGGTTCGAAAAGGAAGGAAGGAGCACTCCTTCTGTCTCCATATCCAGGGAAGTTGCTACCGTGGGTAGGACAGATGCCCGTCAGACCATATCTCAAATAAAAGATGAGAGGTTAGGAACCTCTGAGAAGCCAGATTGGATCACTGTTAGTGCAACTGTTTCATTCATTAAGGTTGATAATTTCTGTTACACAGCATGTCCTATCATGATCGGGGATCGTCAATGCAGCAAAAAGGTTACAAATAACGGAGATGGAAAATGGAGATGCGACCGGTGTGATCAGTCTGTCGACGAATGTGACTACAGGTACATATTGCAGCTGCAAATACAGGATCATACTGGCTTAACTTGGGTGACAGCATTTCAAGAAGGCGGTGAGGAGATCATGGGCATACCTGCAAAAAGATTGTACTATTTGAAATACGAAGAACAAGATGATGAAAAATTTGCAGAAATCATCCGTAAAGTTCTTTTTACAAAATTTATTATGAAGTTGAAAGTAAAGGAAGAGACTTTTAGTGATGAACAGAGTGAAATCAACGGTCATGAAAGCAGAAAGCATTAA 2019 42.69 MAASMAPFKLTEGAVMVICKRESSEETFQPVVQVIDLKFVNTTQQSGSERYRLLLSDGTHYQQGMLGTQLNGLVKSGKLQKGSIVQLRQYVCNPVQERLIIIVIELDVIKEMCDFIGEPVPATRSVSAAFSGNPQSSVGASSGSGIVGNVNVSGASFEQPKVNQSQVPHVGFHFNTPNSGTRFNGSSPVTGSYGDQKMAYHNNGSDIPRSPLNAYAYAPPQPIHQQPPSMYSNRGGPVAKNEAPPRIMPITALNPYQGRWTIKARVTSKGELRDYNNPRGDGKVFSFDLLDAYGGEIRATCFDMVADQFYNQIESGNVYFISKGSLKPAQKNYNHLNNDFEIFLENTSTIQPCFEDDQSIPHQQFHFHHISEIEGMDSNSVVDVIGVVSSINPATSLMRKNGTETQKRSLQLKDMSGRSVELTLWGNFCQAEGQKLQNMCDSGLFPVLAVKSGRVSNFNGKAVGTISTSQLFVEPDFPEARTLRGWFEKEGRSTPSVSISREVATVGRTDARQTISQIKDERLGTSEKPDWITVSATVSFIKVDNFCYTACPIMIGDRQCSKKVTNNGDGKWRCDRCDQSVDECDYRYILQLQIQDHTGLTWVTAFQEGGEEIMGIPAKRLYYLKYEEQDDEKFAEIIRKVLFTKFIMKLKVKEETFSDEQSEINGHESRKH 672
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 9204013 9206444 - CmaCh16G012160.1 Cma16g01216 311814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g01216 672 Gene3D - 246 355 IPR012340 -
Cma16g01216 672 Gene3D - 8 123 IPR012340 -
Cma16g01216 672 SUPERFAMILY Nucleic acid-binding proteins 246 359 IPR012340 -
Cma16g01216 672 PANTHER REPLICATION FACTOR A 1, RFA1 6 665 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Cma16g01216 672 Pfam Replication factor-A C terminal domain 531 661 IPR013955 -
Cma16g01216 672 Gene3D - 359 497 IPR012340 -
Cma16g01216 672 CDD RPA1_DBD_A 249 352 - -
Cma16g01216 672 Pfam Replication protein A OB domain 370 473 IPR031657 -
Cma16g01216 672 SUPERFAMILY Nucleic acid-binding proteins 365 493 IPR012340 -
Cma16g01216 672 PANTHER REPLICATION PROTEIN A SUBUNIT 6 665 - -
Cma16g01216 672 Pfam OB-fold nucleic acid binding domain 260 341 IPR004365 GO:0003676
Cma16g01216 672 Gene3D - 498 667 IPR012340 -
Cma16g01216 672 CDD RPA1_DBD_B 381 488 - -
Cma16g01216 672 CDD RPA1_DBD_C 515 661 IPR013955 -
Cma16g01216 672 SUPERFAMILY Nucleic acid-binding proteins 8 117 IPR012340 -
Cma16g01216 672 SUPERFAMILY Nucleic acid-binding proteins 512 661 IPR012340 -
Cma16g01216 672 Pfam Replication factor-A protein 1, N-terminal domain 10 111 IPR007199 GO:0003677|GO:0005634|GO:0006260
Cma16g01216 672 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 236 661 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Cma16g01216 672 CDD RPA1N 13 110 IPR007199 GO:0003677|GO:0005634|GO:0006260
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g00602 Cma16g01216 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g01409 Cma-Chr5:10498054 Cma16g01216 Cma-Chr16:9204013 0 dispersed
Cma11g00209 Cma-Chr11:1047706 Cma16g01216 Cma-Chr16:9204013 1.53E-78 dispersed
Cma16g01216 Cma-Chr16:9204013 Cma06g00602 Cma-Chr6:2913219 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g01216 K07466 - csv:101211358 1150.96