Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g01217 ATGGATGTGAAGAATCCGAACGAGAAACCGCGTAATTCGCTCGTTGATCGAACAGGTCGGCTTCTTTCAGGTCAGAAACTCGAAAGGCCTTCTCTCCTGCAGCATACGCTAAATCATGAAAGCGCCATTTCAGCGGCTTCATATTTGATTATAGAGACAGTTGCTATTGGTCATTTTCATGTCGCCGTCACGATCTGGCTCTATCTCAATTTAGGCCTCTTTTTGTCTCGAAAAGATCCAAAGATTATCATAAAAATGGAAGGAAGGGGTGTATCAGAATTATATAGAAATGCAAGTGAGGAGCTATTTCTTAAATCTTGGGGGGAAAACTCAATCGGAATGTCAACACCAACCATGGAGATGATGGGATTTAAGAATCTTTCTCAGAGCTTCCGTACAGATAGTGAGGAACTTTTCAAAAGCTGGCTAACAAATGGAGAGAACGTCAACAACTCATCAGGTCCGGCTTATCGCATTCGACAAGCATCAAGAAGGATTTCCTCTGAGATTGTTGACCTGTCTAGTCCTCAGTATGTGGGAAAGCATCAAAAGAGAATAATTAATGATATTTTACGTCCACAAAGTGCCTCTGTGGCTGATGATGTCTCAGGAGTTAATCAACAAGTGTTCAGGAATATTGTTGAAGGTGAAGTGCAAGGTAGTAACCTATATCTTGCTAAGGCATGGTTCCATAGTTCTCAACCTATGACAAGAAGTCGATCATCTGAGCTAAGGAGGAGGTACGCTGCAATGCAAAGCAATCAAAGCTCATTTGGTATCCAGTCCATTTATGACTTGTCAGGGCATGCAATGAAACTAGATGTTGCATACTCGCAGGGTTTCAATGACCTTTCTACTTGTGAGGTTCCAAACCAGCCTGTAACATTTGCATCCCCATCCAATTCATCGGCATCGACATTCAATGCATCTAACATTTTCAATAGAAGCAGTAACAATTATTTACATCAAACACCAAACTATCTTCTGGAAGTCTCTCCTGTTCAAGTCAAGGATAATAGAATTTTGGAAACGGTTGGGCTATCAACAGATATTGATTTCAAAGCTTTTGTAAATCCTGTAAATCCTGTAAATCCCGTACAGTCAGGTAGAGTTTCTCAAGAGCCTTCTCAAAGTGAATCTTCTGCTGCAGCAGCAGTAGTTTCATCCGGGTTTGAGGCATATGATGGTCCTAGCAACTCAAATCAAACTCATAGCAACAGTGAGAGCTCAAGGAAACAAGTTGAAAATGGATCTCGATCAAAAGATTTCAGAGAAAGAATAATAGACAACTTGAAAGATGATAGAAAGAGGGGAAGTTTAGTCCGTAATGGGTCCGTAACATCAGCTGTTTCAGTGGACAAAGGGGATCCCACAAAAAAGCGTCGGGTGGAACGATCACGAAAAATGGCAGAGGCGAAAGAGAGAAATATGACACCAACTATTCCATCAGATATGCAATCAGTTCTGAAGCGGTGTGATACTCTTGAGAAGGAAGTGCGGTCACTGAAGCTCAATTTGTCCTTTATGAATAGGAAGGATTCTGAGCAGACTAAGCAGATAGAGGATCTTCAAAAGCAGAATGAGGACTTGGCAGATGAAAAGGAACGCCTGCTTGAAGAGATTGAAAGGATTCTCTCAGAAACTGGAAGAATGTAA 1656 41.43 MDVKNPNEKPRNSLVDRTGRLLSGQKLERPSLLQHTLNHESAISAASYLIIETVAIGHFHVAVTIWLYLNLGLFLSRKDPKIIIKMEGRGVSELYRNASEELFLKSWGENSIGMSTPTMEMMGFKNLSQSFRTDSEELFKSWLTNGENVNNSSGPAYRIRQASRRISSEIVDLSSPQYVGKHQKRIINDILRPQSASVADDVSGVNQQVFRNIVEGEVQGSNLYLAKAWFHSSQPMTRSRSSELRRRYAAMQSNQSSFGIQSIYDLSGHAMKLDVAYSQGFNDLSTCEVPNQPVTFASPSNSSASTFNASNIFNRSSNNYLHQTPNYLLEVSPVQVKDNRILETVGLSTDIDFKAFVNPVNPVNPVQSGRVSQEPSQSESSAAAAVVSSGFEAYDGPSNSNQTHSNSESSRKQVENGSRSKDFRERIIDNLKDDRKRGSLVRNGSVTSAVSVDKGDPTKKRRVERSRKMAEAKERNMTPTIPSDMQSVLKRCDTLEKEVRSLKLNLSFMNRKDSEQTKQIEDLQKQNEDLADEKERLLEEIERILSETGRM 551
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 9207691 9215810 - CmaCh16G012170.1 Cma16g01217 311815

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g01217 551 MobiDBLite consensus disorder prediction 363 385 - -
Cma16g01217 551 MobiDBLite consensus disorder prediction 414 440 - -
Cma16g01217 551 MobiDBLite consensus disorder prediction 393 413 - -
Cma16g01217 551 MobiDBLite consensus disorder prediction 363 474 - -
Cma16g01217 551 PANTHER PROTEIN CYCLOPS 85 312 IPR040036 GO:0005634|GO:0036377|GO:0043565
Cma16g01217 551 PANTHER PROTEIN CYCLOPS 312 551 IPR040036 GO:0005634|GO:0036377|GO:0043565
Cma16g01217 551 Coils Coil 485 547 - -
Cma16g01217 551 MobiDBLite consensus disorder prediction 454 474 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g01217 - - - cmos:111430970 980.319
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g00600 Cma16g01217 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g01217 Cma-Chr16:9207691 Cma06g00600 Cma-Chr6:2891334 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g888 . . . . . . . . Cmo06g00607 Cmo16g01261 . . . . . Cpe14g01004 . . . . . . . . Cla10g00105 Cam10g0101 Cec10g0108 Cco10g0110 Clacu10g0105 Cmu10g0953 Cre10g0364 Cone8ag0529 . . . Lsi07g01131 . . Cme06g02410 Blo03g00843 . Bda07g00136 . . . . . . . . Cma06g00600 Cma16g01217 Car06g00535 Car16g01143 . . . . . . . . . . . . . . . . . Csa03g00105 Chy06g02200 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011056 1 0 1 0 0 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g01217 Cma_Chr16 FPKM 1.407111 1.528311 0.504625 0.477494 0.4697 0.59942 0.420178 0.804134 1.043011 0.764029