Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g01224 ATGCTTGAAATGTTCAAGTACCTCGTCGGTTCCGCTGGAGCAAGCGGCTACGGCTCCAAATCCACCGCCGAAGAAGTCAGTGAATCTTGTATGAACTCCATCACCGCCATAGTCACAGGAGCGACGTCGGGAATCGGAGAGGAGACAGCGAGAGTCTTGGCCAAGCGCGGTGTAAGGATCATCATTCCGGCTCGAAATCTAAAAGCCGCTGAGGAAGCGAAGGCGAGAATCGTATCGGAATCGAATTGTTTTGATCGTTCACGAATCACGGTTATGGCTCTCGATCTTAGCTCTGTGAAATCCGTCGTGAACTTCGTCTCCAATTTCGAGTCCTTAAATTTGCCTCTTAATCTTCTCATAAATAACGCAGGCAGGTTCTGTTACGAACATGCGCTTTCTGAAGACGGAATTGAGATGACTTTCGCTACAAATTATCTTGGTCATTTTCTCTTGACGAAACTTCTATTGAATAGGATGATAGAAACCGCCAAATCGACAGGAGTCCAAGGCCGAATAGTGAATGTGACGTCCAACATCCATAGCTGGTTTTCGGGCGACATATTCGAATATCTCGGCCAGATAAGCCAGAAAAACAGCAGAGTGTACGATTCGACACGGGCTTACGCATTCTCCAAGCTCGCAAATGTCTTGCACACTGTTCAACTCGCACACAAACTCCAGGAAATGAAGGCGAATGTTACGGTAAACTGTGTTCATCCAGGCGTTGTGAAAACCAATTTGAACAGAGAACGTGAAGGCTTCGTCACAGATTTGATTTTCTACATGGCGTCCAAATCAAGGTTGTTGAAGATAATTCCTGAAGGTGCAGCAACAAGTTGTTACGTAGCCACGAATCGGAACGTGGAAAATGTGAACGGAAAATACTTCGCGGATTGCAACGACCAAGGAAGTTGCGAATGCAAAACGAAATCCGCGCATTTGGCTGAAGGCCTATGGTCTGCCTCTGAAACCATCGTCTCCACACTAACCGGTAAGCCTCAACCCTAA 1008 46.83 MLEMFKYLVGSAGASGYGSKSTAEEVSESCMNSITAIVTGATSGIGEETARVLAKRGVRIIIPARNLKAAEEAKARIVSESNCFDRSRITVMALDLSSVKSVVNFVSNFESLNLPLNLLINNAGRFCYEHALSEDGIEMTFATNYLGHFLLTKLLLNRMIETAKSTGVQGRIVNVTSNIHSWFSGDIFEYLGQISQKNSRVYDSTRAYAFSKLANVLHTVQLAHKLQEMKANVTVNCVHPGVVKTNLNREREGFVTDLIFYMASKSRLLKIIPEGAATSCYVATNRNVENVNGKYFADCNDQGSCECKTKSAHLAEGLWSASETIVSTLTGKPQP 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 9262820 9264333 - CmaCh16G012240.1 Cma16g01224 311822

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g01224 335 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 35 300 IPR036291 -
Cma16g01224 335 PRINTS Glucose/ribitol dehydrogenase family signature 35 52 IPR002347 -
Cma16g01224 335 PRINTS Glucose/ribitol dehydrogenase family signature 114 125 IPR002347 -
Cma16g01224 335 PRINTS Glucose/ribitol dehydrogenase family signature 164 180 IPR002347 -
Cma16g01224 335 PRINTS Glucose/ribitol dehydrogenase family signature 208 227 IPR002347 -
Cma16g01224 335 PRINTS Glucose/ribitol dehydrogenase family signature 231 248 IPR002347 -
Cma16g01224 335 PANTHER RETINOL DEHYDROGENASE 4 330 - -
Cma16g01224 335 Gene3D - 28 329 - -
Cma16g01224 335 Pfam short chain dehydrogenase 35 178 IPR002347 -
Cma16g01224 335 PANTHER MITOCHONDRIAL PYRUVATE CARRIER 4 330 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g01224 - - K11153 csv:101209877 536.569
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma02g00912 Cma16g01224 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00912 Cma-Chr2:5439191 Cma16g01224 Cma-Chr16:9262820 1.40E-133 dispersed
Cma15g01280 Cma-Chr15:8115488 Cma16g01224 Cma-Chr16:9262820 5.99E-149 dispersed
Cma16g00594 Cma-Chr16:3067069 Cma16g01224 Cma-Chr16:9262820 1.43E-56 dispersed
Cma16g01224 Cma-Chr16:9262820 Cma06g00593 Cma-Chr6:2868080 7.52E-42 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g203 . . . Bda08g00756 . Bpe07g00255 . . . Cmo16g01268 Cma02g00912 . Car02g00663 . . Cpe14g01011 . . . . . . . . Cla07g00789 Cam07g0852 Cec07g0905 Cco07g0887 Clacu07g0827 Cmu07g0830 Cre07g1188 . . . . Lsi07g01120 . . Cme07g01644 . . . . . . . Bma12g00444 . Cmo02g00919 . . Cma16g01224 . Car16g01152 Cpe08g00909 . . . . . . . . . . . . . . . . . Chy07g01228 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002525 1 2 2 1 2 2 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 1 2 2 2 2 1 3 1 60
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g01224 Cma_Chr16 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0