Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g01225 ATGGCTGAAACTGAGTTAGGTTCTGTTCTTAATCGCATTTGCAGCACTAACCACTGGTCCTATGGCGTTTTTTGGTGCTTTGATCGAAGAAACTCCATGGTGTTGACTTTGGAGGATATTTGGTATGAAGAGCAAGTGGGGCTGGTGGCTGCTAATATGCTTCAACAAGTTCACATGCTTGGTGAAGGAGCTATTGGCACGGCTGCTTTCACTGGGAAGCACCGGTGGATGTTTTCCGATGCTTCGTTTGGTGAATTGCATTCCTCTATGTTTGAGGATAATCTGGAGTTTCAACAACAATTTTCCTGTGGGATAAAGACCGTTGCAGTAATTCCTGTTCATCCACACGGAGTGATACAGCTTGGCTCTACCCATAAGATCTGGGAAAGTTTCGAGTTCTTGGCCGATGCAAAGAGATCATTATGTCAAGTGATTAATGGTGGCAGACGTGTACAAGAGAAAACTATGCCCATGTCTTCGAGCGCCGATATTTTTCACTTTAACGAGCTTTTCACGTCCTTCATCATGTCTTCGAATTCTGATGATTGGAGTCTCGGTGCCGTGCATAATAACAGCCGTACAGATTTTGCAGGGAAATCTTATGCTTCAATTGATAAACAACCAGCCGTGTTGGCTTCATCCGAGCCGATGCCAACGTCCAACATTAGAGAACAAGATGCTCAATATCCAAGCTATTCGGATGCTGATATGCTTGACTCGTGCAGAAACTTGGTCGAATATGGACACCATAGCTTGAGAATTGCAACAGTCTCAAGTGGAACGGGTTCTCTCTGTATGGATAATGTTCAGCAGTCGGCTCGGTTTCCCGTGATTGAAGGCGAACTCGTGGAAAGCATGACTAGCCGACCTGACTTCTGTGATGAGCATCTTTCTGAAGATTTTACAATGGATCTCCCGGACATCTCGCTCATTGACGATCTATTTCAATGGTTTGATTCTTCACCAGAAAACGGAACGAATGGAGCAACAACAGCAGTGAACGATAACCTTCCACAGTCCACAGGAATTTCGACATTGTCGTCTAATTTGGTTGAAGCTTGTAAGTTCGTTGACGGTTCGAGCAAAACCTCCGTTGTTTCTGCTCGAAGTTGTATAACTAATGCATCACAATCCAGCGAACAAGATAACAGAATCATAACACAGGGTGCAAAAGATAGGCTGTTTGATAGTTTGGGGTTAGGCACAGAAGCTCATGAGAGTTACTCAGGTGGGTGCAACAGTATGTCTACGTGCAGCTCGAAGTTAGCCATCGGGTCAACGGATCTTCCTCGAAAGAGATTATTTTGGGAGTTGGGAATCGAAGAGCTTTTAGATGGTCGAAGCAACACGAGCTCGACGACTAAATCAAGTGTTGAGAATCATCAATCAATTGCCTCAAGAAGGTCAAAGATGGAAAGATCGTTGTTCGAAACTAATCCGATCCAATTACTCGACCCTTGCACCAATGTGAATCCGACACAATCTTCGGGCACAGCTGATCATTTCCCATGTAAGAAAGAAGCTACATTGAAGTCACCGGTAAGTTCGTGGATTGATGACAGCTATAGCACCAATATTGGAGGCTCCATCCTAGAACTATCTCGTAAGAGCGAGGAGCCCGTGAAGACTTGTAAGAAGAGGGCAAGACCTGGAGAGAGTAACCGTCCCCGACCGAAGGATCGACAACAGATCCAAGATCGGCTCAAAGAGTTGAGAGGAATTATCCCTAGTGGTGCAAAGTGTAGCATCGACTCGTTGTTGGATCGGACTATCAAATACATGCTTTTCTTACAAAGTGTTACGAAATACGCAGACAAGCTTAAAGAAACTCACGAACCAAAGTTAATCGACCAAGATGATGGGGTGGCTGTAAATGACAAATGCACCACGGAGAGAGGTGGTGGCGGGGTTACTTGGGCGTATAAAGTGGGAACGACACCGATCGTTTGCCCGGTTATCGTCGAAGACCTTAGTTCACCTGGTCAAATGCTGATCGAGATGCTATGTGAGGAAAGAGGCTTCTTTCTCGAGATAGCCGACATGATTCGTGGCTATGGATTGACGATTTTGAAAGGCATGATGGAAGTCCGAGAGGACAAGATATGGGCACAGTTTGTTGTCGAGGTGAAGCTAAATACTAACCAGAGTATTACAAGGATAAATGTGTTCTTGTCCCTCATGGAGCTCCTACAACAAACAAACATTAGTGGAGCTGAATTAGCTAGTTAG 2229 45.0 MAETELGSVLNRICSTNHWSYGVFWCFDRRNSMVLTLEDIWYEEQVGLVAANMLQQVHMLGEGAIGTAAFTGKHRWMFSDASFGELHSSMFEDNLEFQQQFSCGIKTVAVIPVHPHGVIQLGSTHKIWESFEFLADAKRSLCQVINGGRRVQEKTMPMSSSADIFHFNELFTSFIMSSNSDDWSLGAVHNNSRTDFAGKSYASIDKQPAVLASSEPMPTSNIREQDAQYPSYSDADMLDSCRNLVEYGHHSLRIATVSSGTGSLCMDNVQQSARFPVIEGELVESMTSRPDFCDEHLSEDFTMDLPDISLIDDLFQWFDSSPENGTNGATTAVNDNLPQSTGISTLSSNLVEACKFVDGSSKTSVVSARSCITNASQSSEQDNRIITQGAKDRLFDSLGLGTEAHESYSGGCNSMSTCSSKLAIGSTDLPRKRLFWELGIEELLDGRSNTSSTTKSSVENHQSIASRRSKMERSLFETNPIQLLDPCTNVNPTQSSGTADHFPCKKEATLKSPVSSWIDDSYSTNIGGSILELSRKSEEPVKTCKKRARPGESNRPRPKDRQQIQDRLKELRGIIPSGAKCSIDSLLDRTIKYMLFLQSVTKYADKLKETHEPKLIDQDDGVAVNDKCTTERGGGGVTWAYKVGTTPIVCPVIVEDLSSPGQMLIEMLCEERGFFLEIADMIRGYGLTILKGMMEVREDKIWAQFVVEVKLNTNQSITRINVFLSLMELLQQTNISGAELAS 742
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 9273155 9278059 + CmaCh16G012250.1 Cma16g01225 311823

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g01225 742 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 561 604 IPR036638 GO:0046983
Cma16g01225 742 MobiDBLite consensus disorder prediction 447 470 - -
Cma16g01225 742 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK (WITH NO LYSINE)-LIKE PROTEIN-RELATED 4 737 - -
Cma16g01225 742 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 548 597 IPR011598 GO:0046983
Cma16g01225 742 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 4 737 IPR043561 GO:0003700|GO:0006355
Cma16g01225 742 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 53 139 IPR025610 -
Cma16g01225 742 MobiDBLite consensus disorder prediction 447 464 - -
Cma16g01225 742 MobiDBLite consensus disorder prediction 537 563 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g01225 - - - csv:101210125 1175.61
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00904 Cma-Chr11:4639120 Cma16g01225 Cma-Chr16:9273155 3.04E-19 dispersed
Cma16g01225 Cma-Chr16:9273155 Cma17g01223 Cma-Chr17:8426869 1.66E-19 dispersed
Cma16g01225 Cma-Chr16:9273155 Cma06g00592 Cma-Chr6:2847771 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g215 . . . . . Bpe07g00254 . . Cmo06g00596 Cmo16g01269 . . . . . Cpe14g01012 . . . . . . . . Cla10g00090 Cam10g0090 Cec10g0094 Cco10g0096 Clacu10g0091 Cmu10g0938 Cre10g0352 . . . . Lsi07g01119 . . Cme06g02399 . . . . . . . . . . . . Cma16g01225 Car06g00525 Car16g01153 Cpe08g00910 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011815 1 0 1 0 1 1 2 1 1 1 1 1 1 1 1 2 1 0 2 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g01225 Cma_Chr16 FPKM 1.487649 1.905616 1.840442 1.717242 4.03547 3.80269 4.742061 0.747626 0.760591 0.804298