Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g01227 ATGTCTGCAACAATCAAGCACTCATTTCTTTCTCCTTCAAATCCAATTCATCTCTCCGCAATCTCTACAAACTTTCTCAAATCACACCCTTCCTCCATGATCATCTCGCACATACCTTTAAGTTTCTCAACACCGCGTCTCAAAATCGTGAAATGTAGCTCGGAATCGAACGATGAAGCTCAAAACAATGTCAATTTGAATAATGCTTTGTCCAGCATGGTCGGTGAGCAGATTGAGGAACTTTTGAACAAGGAAGAGAATAGGAGTTTGCTCGATGGCTTGGAGAAGGCGTCGATGAGAGTTGAAATCGCCAAAAGGCAGTTGGCTGAGATCGAGAAACAGGAACTTGAGCTCAAACGATTCAAGGATCATATTAACCAGCTCGAAAGTAGAGCATCGGAGATTGAAGAATGTCAAAAGGAGATATTGGAGGCAAGAGGGATGATCGAGGAGGCCGAGCGCTCTCTCTCACAAAGCGAGGGTGGAAATGCAAAAAGAGACGAGGAAGATGGAGGAATTGACAGAGATGAAGAGAGATTGGAATCTGTAAAAGCAGCGTCCATATCAGCCATTGTTGGCACACTTGCAGGGCTGCCTATCTTTCTTAATCAAGTGACCAGCATTTCTCAGCTTGCACTCCCTCTTGCAATCACCTTTATTAGCTGTGCCTTGTTTGGAGTTACATTCCGATACACAATAAGGAGAGACTTGGATAATATTCAGCTCAAGACTGGAACATCTGCCGCTTTCGGTTTCGTTAAAGGTCTTGCAACACTAGATGGTGGAGTACCTCTGGAATTTAATGCTGAGAGTTTCTCATCACACGTCACTGATGCTGCTGTGTATGTATCTGAAAACCTTTATATATTTATTTCTGCTGCTGTTGCACTGGAATTCTGTTTCAAGTTGAGGTTATTAAGCCCTTTTCCTATAAGAAAATCAGTATAA 948 42.72 MSATIKHSFLSPSNPIHLSAISTNFLKSHPSSMIISHIPLSFSTPRLKIVKCSSESNDEAQNNVNLNNALSSMVGEQIEELLNKEENRSLLDGLEKASMRVEIAKRQLAEIEKQELELKRFKDHINQLESRASEIEECQKEILEARGMIEEAERSLSQSEGGNAKRDEEDGGIDRDEERLESVKAASISAIVGTLAGLPIFLNQVTSISQLALPLAITFISCALFGVTFRYTIRRDLDNIQLKTGTSAAFGFVKGLATLDGGVPLEFNAESFSSHVTDAAVYVSENLYIFISAAVALEFCFKLRLLSPFPIRKSV 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 9288049 9290875 + CmaCh16G012270.1 Cma16g01227 311825

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g01227 315 MobiDBLite consensus disorder prediction 160 176 - -
Cma16g01227 315 PANTHER OS09G0529350 PROTEIN 34 314 - -
Cma16g01227 315 Coils Coil 94 155 - -
Cma16g01227 315 MobiDBLite consensus disorder prediction 153 176 - -
Cma16g01227 315 PANTHER OS09G0529350 PROTEIN 34 314 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g01227 - - - csv:101213449 501.13
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g227 . . . . . Bpe07g00253 . . . . . . . . . Cpe14g01013 . . . . . . . . Cla10g00087 Cam10g0086 Cec10g0090 Cco10g0092 Clacu10g0087 Cmu10g0934 Cre10g0348 . . . . Lsi07g01114 . . Cme06g02395 . . . . . . . . . . . . Cma16g01227 . Car16g01155 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012645 0 0 1 0 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 4 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g01227 Cma_Chr16 FPKM 0.490148 1.151883 7.088102 7.778064 27.713461 28.220154 30.036419 9.092707 9.574784 9.375028