Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g01228 ATGTCGATTTGTTACGTCGACAACAGGTTACCTAAGCTACTTGTGTCACTCATTCATGGCGGAGTAATTCGGCATTTTCTCTTTGGACTTTCAGTTTCGTTCTTGACGGATCTTCAATCTGCTGGTTTTCCGGAACCTCGCTTCAATCCTGCCCTTCCTGTTCGACACTTCACCATGTCGCCGATTCCCGAGGAACCTAATAATTTGCAGAACGGAATCGAAATCGAACCACACATTTCGGTAGAATCAAATCAAATTGGTGAATCCAAATCAGAGCCGGAATCCACAGCAGATGTGGTTCCCACAGCTGAATTACAACAAGAACGCGAATCGGAATCAGTTAATGGAGTAGCCGACTTGGAGCCTCAATTGGAGATGGTAATTCCCACAGCTGAATTACAACAAGAGCGCGAATCGGAATCAGTCAATGGAGTAGCAGACTCGGAGCCTCAATCGGAGCTGGATTCTCCCAGGAAACAGTTATCGGAGTCCATCGAATTACAGGTAGTGACGGATGTTACAGATCCGAGGTTTGAAGAGCCTAAAGGAACCTCGATCTCATCCAACGGCGCCGAGAACTCGCAACCCGCGCTGCGTAAAGACGAAGGAAGCCGAACATTTACAATGAGAGAGTTGCTGAATGGATTGAAAGTTGAAGATGGTAACGACAGCCTTAACGAATCTGAAGGCGAGAAGCCGGAGGCGAACTCCGGTTACAGTCTTAATCAAGATAGTCCACATCAGCCTTATTCTGAACAGAGCAGAGCTGCCATGGAGTTGATCAACAGTGTTACAGGTGTTGATGAAGAGGGCCGTTCTCGCCAAAGGATTCTCACATTTGCTGCTAGGAGGTATGCGAGTGCAATTGAGAGAAATGGTCAAGATTATGATGCTCTATACAATTGGGCTTTGGTCCTCCAGGAGAGTGCAGACAATGTTAGTCCAGATTCCACTTCACCTTCTAAAGATGCGTTGCTTGAAGAGGCTTGTAAAAAGTACGATGAGGCTACCCGTCTTTGCCCAACACTTCATGATGCTTTTTATAATTGGGCTATTGCAATCTCTGATCGTGCCAAAATGCGTGGTCGTACAAAGGAGGCTGAAGAACTGTGGAAGCAGGCTACCAGAAATTATGAAAAAGCTGTACAACTCAACTGGAATAGTCCCCAGGCGCTAAATAATTGGGGGCTTGCTCTACAGGAACTCAGTGCGATTGTGCCAGCACGAGAAAAGCCGACAATTGTAAAAACAGCTATCAGTAAGTTCCGTGCTGCTATACAGTTGCAATTTGATTTTCATCGAGCAATCTACAACCTTGGTACTGTTCTGTATGGACTAGCTGAGGACACATTGCGGACTGGTGGCACAGGAACTGTTAAGGATGTTTCCCCTAATGAGTTGTACAGCCAATCTGCAATTTATATTGCAGCTGCGCATGCTCTAAAACCAAGTTACTCTGTTTACAGCAGTGCCTTGCGGTTGGTTCGTTCAATGCTGCCGTTACCCTATCTAAAAGTTGGATACCTGACTGCACCTCCGGTTGGGAGACCATTTGCTCCTCACGGTGATTGGAAACGTTCACAATTTTTTCTAAATCATGATGTATTGCAAAAGCTTAACATAGGCGGGGAACAAATACAAACATCCCCTACTCTTTTGGGAAGATCTGGAAGTACTTTGAATGGCGACAGGACAATGAAAGTAGAAATTCCAGATATTGTCTCTGTTTCAGCATGTGCAGATCTAACTTTACCACCTGGTGCCGGGCTCTGCATCGACACAATCCATGGACAAATTTTCTTGGTTGCTGACTCGTGGGACGCGCTCGATGGATGGCTTGATGCAATTAGATTAGTTTACACGATCTATGCCCGAGGGAAGAACGAGGTTATGGGCAGTATGGGGGGAAGGCAAAGAACTTACAGCGCCAATTCGACTGATTATAAGCTTCTTGAAGAGATTGGTTATGGTGCTAGTGCCACTGTTTTTAGAGCGATCTATACTCCGTCTAATGAAGTTGTCGCCATCAAATGTTTGGATCTTGATCGCTGCAATAGTAATTTTGATGATATACGTAGGGAGGCTCAAACAATGAGTTTGATAGATCATCCTAACATTGTAAGGGCTTATTGTTCATTTGTTGTTGAACGAGACCTTTGGGTTGTCATGCCATTCATGGCAGAGGGTTCTTGTTTGCACCTAATGAAGACAGCGTACTCAGATGGCTTTGAAGAGGTTGCTATTTGTTCTATCCTGAAAGAGACTCTTAAAGCTTTGGAGTACCTTCATCGCCAGGGACACATACATCGAGATGTGAAGGCTGGAAATATACTACTTGATAGTAATGGGGCTGTGAAGCTTGCTGATTTTGGTGTTTCAGCTTGCATGTTTGAAACAGGCGATAGACAGCGCGCCAGAAATACCTTCACGGGAACCCCATGCTGGATGGCGCCGGAGGTATTTCAACCAGGAACGGGTTATGATTCCAAGGCTGATATCTGGTCCTTTGGTATTACAGCATTGGAGTTGGCTCATGGTCATGCACCATTTTCAAAATATCCTCCAATGAAGGTGCTTCTTATGACCATACAAAATGCCCCTCCTGGGCTGGATTATGATAGAGATAAAAGGTTCTCTAAGTCTTTTAAAGAAATGGTTGCAATGTGCCTGGTGAAAGATCAAACGAAGAGGCCAACAGCTGAAAAACTTTTAAAGCACTCATTTTTCAAGCATGCAAAGCCTCCAGAGCTTTCTTTGAAGAAACTATTCGCTAACTTGCCTCCACTTTCACATCGTGTAAAGGACCTCCAGCTTAAAGATGCTGCCCAGCTAGCCTTAAAAAAAATGCCTTCATCAGAGCAAGAAGCATTATCACAGAGTGAGTACCAGCGAGGAGTTAGTGCATGGAACTTTGATGTTGAGGATTTGAAAGCCCAAGCTTCCCTGGTGAATAATGATATGGCAGAGATGAAGGAAGAGGAGGAGAGTATAAATTCTTGTAGTGTTAAGGATGCTTTTTGCCCTCAATCTAGTTTGAGGAATTTCAATTCATGTAATGAATCATCTCAGGATGAACATGGAGCAGGGGCAAGTGGTCAGGGATTGCCACAAGTGGAGTGCTTGAGCAAAAAGGGAAACTTTATGGAAAATGATATGCTGAAAGGTGGGTTGCAAGAAAAAACTGGATGGAATAGAAATGGAACGAGCACTGAAGCAGAAGCATCTACCTCTGGCCAAGACATTGTACAAGGCAAGCCCAAAACTCAAATGCCAAAAGGTCGTCAAACTCAAAGTGGTCCAATTCTGCCCGGTATTGTGCTCAGTCATTCTTTGTCAGAAAGAGTGCGAGGCTCTGAGAGGTTTGATTCTGAAATTCAACCATCTACTGAAAAAAATCGTCGTGAGGCACGGCAAGCTCCAAGCTTCAGTGGTCCACTAATGCTGCCAAACCGTGCTTCTGCAAACAGCCTATCAGCTCCCATAAAATCTTCTGGAGGGTTTAGAGATTCAATGGATGAAAAATCCAAAGCTAATCTTGTGCAAATTAAGGGACGTTTTTCAGTGACATCAGAGAACCTAGATCTCGTAAAGGATATTCCATTGAGCACAGTTTCACGTCGGTCTTCACAGGTTCTTTACCATTCTTTTCTAATGACCATATCTGGGTTAGTTGATGCTCATTTGCTGAGTTCTGTTACTTTGATGTGTGTTCAGAACTCGCCTCTACGAAAGTCGGCTAGTGTCGGTGATTGGATATTTGATTCCAAGCAGTCTGTCAGCCAACCCCCTAAGGAGTCTTGCAACACCAACTTGACCACATCAATTCTTTTGCCTCATCTTCAGAATCTTTTCCATCAGACCTCAATTCAACAGGATCTTATAGTGAACTTATTGAATTGCTTGCAAACAGCAGACGTGGTTGATGCTACTCAAAATGGAAAGTTGCCTCCTTTGCCTCGAAACTCAGAGAACAATGGAATTGCTGAAACAGCAGCTGTTGAGAGAGAGCGTTTACTGATGCGGAAAGTCTCTGAACTTCAAGCTAGAATGACGCATTTGACCTATGAATTGACCGCTGAAAAGTTGAAATACATTCAATTACAAGAGCAGTTCAACTCGACATCTGGTCAGGAAGAAAATGAGACCAAGAGGGAAGAAAATGTCTGA 4167 44.2 MSICYVDNRLPKLLVSLIHGGVIRHFLFGLSVSFLTDLQSAGFPEPRFNPALPVRHFTMSPIPEEPNNLQNGIEIEPHISVESNQIGESKSEPESTADVVPTAELQQERESESVNGVADLEPQLEMVIPTAELQQERESESVNGVADSEPQSELDSPRKQLSESIELQVVTDVTDPRFEEPKGTSISSNGAENSQPALRKDEGSRTFTMRELLNGLKVEDGNDSLNESEGEKPEANSGYSLNQDSPHQPYSEQSRAAMELINSVTGVDEEGRSRQRILTFAARRYASAIERNGQDYDALYNWALVLQESADNVSPDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATRNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKPTIVKTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTGTVKDVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLVRSMLPLPYLKVGYLTAPPVGRPFAPHGDWKRSQFFLNHDVLQKLNIGGEQIQTSPTLLGRSGSTLNGDRTMKVEIPDIVSVSACADLTLPPGAGLCIDTIHGQIFLVADSWDALDGWLDAIRLVYTIYARGKNEVMGSMGGRQRTYSANSTDYKLLEEIGYGASATVFRAIYTPSNEVVAIKCLDLDRCNSNFDDIRREAQTMSLIDHPNIVRAYCSFVVERDLWVVMPFMAEGSCLHLMKTAYSDGFEEVAICSILKETLKALEYLHRQGHIHRDVKAGNILLDSNGAVKLADFGVSACMFETGDRQRARNTFTGTPCWMAPEVFQPGTGYDSKADIWSFGITALELAHGHAPFSKYPPMKVLLMTIQNAPPGLDYDRDKRFSKSFKEMVAMCLVKDQTKRPTAEKLLKHSFFKHAKPPELSLKKLFANLPPLSHRVKDLQLKDAAQLALKKMPSSEQEALSQSEYQRGVSAWNFDVEDLKAQASLVNNDMAEMKEEEESINSCSVKDAFCPQSSLRNFNSCNESSQDEHGAGASGQGLPQVECLSKKGNFMENDMLKGGLQEKTGWNRNGTSTEAEASTSGQDIVQGKPKTQMPKGRQTQSGPILPGIVLSHSLSERVRGSERFDSEIQPSTEKNRREARQAPSFSGPLMLPNRASANSLSAPIKSSGGFRDSMDEKSKANLVQIKGRFSVTSENLDLVKDIPLSTVSRRSSQVLYHSFLMTISGLVDAHLLSSVTLMCVQNSPLRKSASVGDWIFDSKQSVSQPPKESCNTNLTTSILLPHLQNLFHQTSIQQDLIVNLLNCLQTADVVDATQNGKLPPLPRNSENNGIAETAAVERERLLMRKVSELQARMTHLTYELTAEKLKYIQLQEQFNSTSGQEENETKREENV 1388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 9292258 9318370 - CmaCh16G012280.1 Cma16g01228 311826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g01228 1388 Gene3D Phosphorylase Kinase; domain 1 637 725 - -
Cma16g01228 1388 MobiDBLite consensus disorder prediction 134 151 - -
Cma16g01228 1388 SUPERFAMILY Protein kinase-like (PK-like) 647 965 IPR011009 -
Cma16g01228 1388 MobiDBLite consensus disorder prediction 84 253 - -
Cma16g01228 1388 Coils Coil 973 993 - -
Cma16g01228 1388 SUPERFAMILY TPR-like 281 403 IPR011990 GO:0005515
Cma16g01228 1388 SMART serkin_6 648 909 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma16g01228 1388 MobiDBLite consensus disorder prediction 231 253 - -
Cma16g01228 1388 MobiDBLite consensus disorder prediction 84 113 - -
Cma16g01228 1388 MobiDBLite consensus disorder prediction 1055 1150 - -
Cma16g01228 1388 ProSiteProfiles Protein kinase domain profile. 648 909 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma16g01228 1388 CDD STKc_OSR1_SPAK 647 909 - -
Cma16g01228 1388 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 634 1380 - -
Cma16g01228 1388 MobiDBLite consensus disorder prediction 1061 1096 - -
Cma16g01228 1388 MobiDBLite consensus disorder prediction 1113 1137 - -
Cma16g01228 1388 MobiDBLite consensus disorder prediction 181 195 - -
Cma16g01228 1388 Gene3D Transferase(Phosphotransferase) domain 1 729 960 - -
Cma16g01228 1388 Pfam Protein kinase domain 648 909 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma16g01228 1388 Gene3D Tetratricopeptide repeat domain 267 386 IPR011990 GO:0005515
Cma16g01228 1388 Gene3D Tetratricopeptide repeat domain 387 501 IPR011990 GO:0005515
Cma16g01228 1388 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 634 1380 - -
Cma16g01228 1388 ProSitePatterns Protein kinases ATP-binding region signature. 654 677 IPR017441 GO:0005524
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g00589 Cma16g01228 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma15g00341 Cma-Chr15:1575235 Cma16g01228 Cma-Chr16:9292258 3.89E-168 dispersed
Cma16g01228 Cma-Chr16:9292258 Cma18g01102 Cma-Chr18:9013246 2.92E-57 dispersed
Cma03g00470 Cma-Chr3:4760968 Cma16g01228 Cma-Chr16:9292258 1.79E-08 transposed
Cma06g00589 Cma-Chr6:2831850 Cma16g01228 Cma-Chr16:9292258 0 transposed
Cma16g01228 Cma-Chr16:9292258 Cma06g00588 Cma-Chr6:2820082 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69211 PF00069 Pkinase 5.60E-60 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g01228 - - csv:101213683 1328.92