Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g01228 ATGTCGATTTGTTACGTCGACAACAGGTTACCTAAGCTACTTGTGTCACTCATTCATGGCGGAGTAATTCGGCATTTTCTCTTTGGACTTTCAGTTTCGTTCTTGACGGATCTTCAATCTGCTGGTTTTCCGGAACCTCGCTTCAATCCTGCCCTTCCTGTTCGACACTTCACCATGTCGCCGATTCCCGAGGAACCTAATAATTTGCAGAACGGAATCGAAATCGAACCACACATTTCGGTAGAATCAAATCAAATTGGTGAATCCAAATCAGAGCCGGAATCCACAGCAGATGTGGTTCCCACAGCTGAATTACAACAAGAACGCGAATCGGAATCAGTTAATGGAGTAGCCGACTTGGAGCCTCAATTGGAGATGGTAATTCCCACAGCTGAATTACAACAAGAGCGCGAATCGGAATCAGTCAATGGAGTAGCAGACTCGGAGCCTCAATCGGAGCTGGATTCTCCCAGGAAACAGTTATCGGAGTCCATCGAATTACAGGTAGTGACGGATGTTACAGATCCGAGGTTTGAAGAGCCTAAAGGAACCTCGATCTCATCCAACGGCGCCGAGAACTCGCAACCCGCGCTGCGTAAAGACGAAGGAAGCCGAACATTTACAATGAGAGAGTTGCTGAATGGATTGAAAGTTGAAGATGGTAACGACAGCCTTAACGAATCTGAAGGCGAGAAGCCGGAGGCGAACTCCGGTTACAGTCTTAATCAAGATAGTCCACATCAGCCTTATTCTGAACAGAGCAGAGCTGCCATGGAGTTGATCAACAGTGTTACAGGTGTTGATGAAGAGGGCCGTTCTCGCCAAAGGATTCTCACATTTGCTGCTAGGAGGTATGCGAGTGCAATTGAGAGAAATGGTCAAGATTATGATGCTCTATACAATTGGGCTTTGGTCCTCCAGGAGAGTGCAGACAATGTTAGTCCAGATTCCACTTCACCTTCTAAAGATGCGTTGCTTGAAGAGGCTTGTAAAAAGTACGATGAGGCTACCCGTCTTTGCCCAACACTTCATGATGCTTTTTATAATTGGGCTATTGCAATCTCTGATCGTGCCAAAATGCGTGGTCGTACAAAGGAGGCTGAAGAACTGTGGAAGCAGGCTACCAGAAATTATGAAAAAGCTGTACAACTCAACTGGAATAGTCCCCAGGCGCTAAATAATTGGGGGCTTGCTCTACAGGAACTCAGTGCGATTGTGCCAGCACGAGAAAAGCCGACAATTGTAAAAACAGCTATCAGTAAGTTCCGTGCTGCTATACAGTTGCAATTTGATTTTCATCGAGCAATCTACAACCTTGGTACTGTTCTGTATGGACTAGCTGAGGACACATTGCGGACTGGTGGCACAGGAACTGTTAAGGATGTTTCCCCTAATGAGTTGTACAGCCAATCTGCAATTTATATTGCAGCTGCGCATGCTCTAAAACCAAGTTACTCTGTTTACAGCAGTGCCTTGCGGTTGGTTCGTTCAATGCTGCCGTTACCCTATCTAAAAGTTGGATACCTGACTGCACCTCCGGTTGGGAGACCATTTGCTCCTCACGGTGATTGGAAACGTTCACAATTTTTTCTAAATCATGATGTATTGCAAAAGCTTAACATAGGCGGGGAACAAATACAAACATCCCCTACTCTTTTGGGAAGATCTGGAAGTACTTTGAATGGCGACAGGACAATGAAAGTAGAAATTCCAGATATTGTCTCTGTTTCAGCATGTGCAGATCTAACTTTACCACCTGGTGCCGGGCTCTGCATCGACACAATCCATGGACAAATTTTCTTGGTTGCTGACTCGTGGGACGCGCTCGATGGATGGCTTGATGCAATTAGATTAGTTTACACGATCTATGCCCGAGGGAAGAACGAGGTTATGGGCAGTATGGGGGGAAGGCAAAGAACTTACAGCGCCAATTCGACTGATTATAAGCTTCTTGAAGAGATTGGTTATGGTGCTAGTGCCACTGTTTTTAGAGCGATCTATACTCCGTCTAATGAAGTTGTCGCCATCAAATGTTTGGATCTTGATCGCTGCAATAGTAATTTTGATGATATACGTAGGGAGGCTCAAACAATGAGTTTGATAGATCATCCTAACATTGTAAGGGCTTATTGTTCATTTGTTGTTGAACGAGACCTTTGGGTTGTCATGCCATTCATGGCAGAGGGTTCTTGTTTGCACCTAATGAAGACAGCGTACTCAGATGGCTTTGAAGAGGTTGCTATTTGTTCTATCCTGAAAGAGACTCTTAAAGCTTTGGAGTACCTTCATCGCCAGGGACACATACATCGAGATGTGAAGGCTGGAAATATACTACTTGATAGTAATGGGGCTGTGAAGCTTGCTGATTTTGGTGTTTCAGCTTGCATGTTTGAAACAGGCGATAGACAGCGCGCCAGAAATACCTTCACGGGAACCCCATGCTGGATGGCGCCGGAGGTATTTCAACCAGGAACGGGTTATGATTCCAAGGCTGATATCTGGTCCTTTGGTATTACAGCATTGGAGTTGGCTCATGGTCATGCACCATTTTCAAAATATCCTCCAATGAAGGTGCTTCTTATGACCATACAAAATGCCCCTCCTGGGCTGGATTATGATAGAGATAAAAGGTTCTCTAAGTCTTTTAAAGAAATGGTTGCAATGTGCCTGGTGAAAGATCAAACGAAGAGGCCAACAGCTGAAAAACTTTTAAAGCACTCATTTTTCAAGCATGCAAAGCCTCCAGAGCTTTCTTTGAAGAAACTATTCGCTAACTTGCCTCCACTTTCACATCGTGTAAAGGACCTCCAGCTTAAAGATGCTGCCCAGCTAGCCTTAAAAAAAATGCCTTCATCAGAGCAAGAAGCATTATCACAGAGTGAGTACCAGCGAGGAGTTAGTGCATGGAACTTTGATGTTGAGGATTTGAAAGCCCAAGCTTCCCTGGTGAATAATGATATGGCAGAGATGAAGGAAGAGGAGGAGAGTATAAATTCTTGTAGTGTTAAGGATGCTTTTTGCCCTCAATCTAGTTTGAGGAATTTCAATTCATGTAATGAATCATCTCAGGATGAACATGGAGCAGGGGCAAGTGGTCAGGGATTGCCACAAGTGGAGTGCTTGAGCAAAAAGGGAAACTTTATGGAAAATGATATGCTGAAAGGTGGGTTGCAAGAAAAAACTGGATGGAATAGAAATGGAACGAGCACTGAAGCAGAAGCATCTACCTCTGGCCAAGACATTGTACAAGGCAAGCCCAAAACTCAAATGCCAAAAGGTCGTCAAACTCAAAGTGGTCCAATTCTGCCCGGTATTGTGCTCAGTCATTCTTTGTCAGAAAGAGTGCGAGGCTCTGAGAGGTTTGATTCTGAAATTCAACCATCTACTGAAAAAAATCGTCGTGAGGCACGGCAAGCTCCAAGCTTCAGTGGTCCACTAATGCTGCCAAACCGTGCTTCTGCAAACAGCCTATCAGCTCCCATAAAATCTTCTGGAGGGTTTAGAGATTCAATGGATGAAAAATCCAAAGCTAATCTTGTGCAAATTAAGGGACGTTTTTCAGTGACATCAGAGAACCTAGATCTCGTAAAGGATATTCCATTGAGCACAGTTTCACGTCGGTCTTCACAGGTTCTTTACCATTCTTTTCTAATGACCATATCTGGGTTAGTTGATGCTCATTTGCTGAGTTCTGTTACTTTGATGTGTGTTCAGAACTCGCCTCTACGAAAGTCGGCTAGTGTCGGTGATTGGATATTTGATTCCAAGCAGTCTGTCAGCCAACCCCCTAAGGAGTCTTGCAACACCAACTTGACCACATCAATTCTTTTGCCTCATCTTCAGAATCTTTTCCATCAGACCTCAATTCAACAGGATCTTATAGTGAACTTATTGAATTGCTTGCAAACAGCAGACGTGGTTGATGCTACTCAAAATGGAAAGTTGCCTCCTTTGCCTCGAAACTCAGAGAACAATGGAATTGCTGAAACAGCAGCTGTTGAGAGAGAGCGTTTACTGATGCGGAAAGTCTCTGAACTTCAAGCTAGAATGACGCATTTGACCTATGAATTGACCGCTGAAAAGTTGAAATACATTCAATTACAAGAGCAGTTCAACTCGACATCTGGTCAGGAAGAAAATGAGACCAAGAGGGAAGAAAATGTCTGA 4167 44.2 MSICYVDNRLPKLLVSLIHGGVIRHFLFGLSVSFLTDLQSAGFPEPRFNPALPVRHFTMSPIPEEPNNLQNGIEIEPHISVESNQIGESKSEPESTADVVPTAELQQERESESVNGVADLEPQLEMVIPTAELQQERESESVNGVADSEPQSELDSPRKQLSESIELQVVTDVTDPRFEEPKGTSISSNGAENSQPALRKDEGSRTFTMRELLNGLKVEDGNDSLNESEGEKPEANSGYSLNQDSPHQPYSEQSRAAMELINSVTGVDEEGRSRQRILTFAARRYASAIERNGQDYDALYNWALVLQESADNVSPDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATRNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKPTIVKTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTGTVKDVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLVRSMLPLPYLKVGYLTAPPVGRPFAPHGDWKRSQFFLNHDVLQKLNIGGEQIQTSPTLLGRSGSTLNGDRTMKVEIPDIVSVSACADLTLPPGAGLCIDTIHGQIFLVADSWDALDGWLDAIRLVYTIYARGKNEVMGSMGGRQRTYSANSTDYKLLEEIGYGASATVFRAIYTPSNEVVAIKCLDLDRCNSNFDDIRREAQTMSLIDHPNIVRAYCSFVVERDLWVVMPFMAEGSCLHLMKTAYSDGFEEVAICSILKETLKALEYLHRQGHIHRDVKAGNILLDSNGAVKLADFGVSACMFETGDRQRARNTFTGTPCWMAPEVFQPGTGYDSKADIWSFGITALELAHGHAPFSKYPPMKVLLMTIQNAPPGLDYDRDKRFSKSFKEMVAMCLVKDQTKRPTAEKLLKHSFFKHAKPPELSLKKLFANLPPLSHRVKDLQLKDAAQLALKKMPSSEQEALSQSEYQRGVSAWNFDVEDLKAQASLVNNDMAEMKEEEESINSCSVKDAFCPQSSLRNFNSCNESSQDEHGAGASGQGLPQVECLSKKGNFMENDMLKGGLQEKTGWNRNGTSTEAEASTSGQDIVQGKPKTQMPKGRQTQSGPILPGIVLSHSLSERVRGSERFDSEIQPSTEKNRREARQAPSFSGPLMLPNRASANSLSAPIKSSGGFRDSMDEKSKANLVQIKGRFSVTSENLDLVKDIPLSTVSRRSSQVLYHSFLMTISGLVDAHLLSSVTLMCVQNSPLRKSASVGDWIFDSKQSVSQPPKESCNTNLTTSILLPHLQNLFHQTSIQQDLIVNLLNCLQTADVVDATQNGKLPPLPRNSENNGIAETAAVERERLLMRKVSELQARMTHLTYELTAEKLKYIQLQEQFNSTSGQEENETKREENV 1388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 9292258 9318370 - CmaCh16G012280.1 Cma16g01228 311826

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g01228 1388 Gene3D Phosphorylase Kinase; domain 1 637 725 - -
Cma16g01228 1388 MobiDBLite consensus disorder prediction 134 151 - -
Cma16g01228 1388 SUPERFAMILY Protein kinase-like (PK-like) 647 965 IPR011009 -
Cma16g01228 1388 MobiDBLite consensus disorder prediction 84 253 - -
Cma16g01228 1388 Coils Coil 973 993 - -
Cma16g01228 1388 SUPERFAMILY TPR-like 281 403 IPR011990 GO:0005515
Cma16g01228 1388 SMART serkin_6 648 909 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma16g01228 1388 MobiDBLite consensus disorder prediction 231 253 - -
Cma16g01228 1388 MobiDBLite consensus disorder prediction 84 113 - -
Cma16g01228 1388 MobiDBLite consensus disorder prediction 1055 1150 - -
Cma16g01228 1388 ProSiteProfiles Protein kinase domain profile. 648 909 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma16g01228 1388 CDD STKc_OSR1_SPAK 647 909 - -
Cma16g01228 1388 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 634 1380 - -
Cma16g01228 1388 MobiDBLite consensus disorder prediction 1061 1096 - -
Cma16g01228 1388 MobiDBLite consensus disorder prediction 1113 1137 - -
Cma16g01228 1388 MobiDBLite consensus disorder prediction 181 195 - -
Cma16g01228 1388 Gene3D Transferase(Phosphotransferase) domain 1 729 960 - -
Cma16g01228 1388 Pfam Protein kinase domain 648 909 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma16g01228 1388 Gene3D Tetratricopeptide repeat domain 267 386 IPR011990 GO:0005515
Cma16g01228 1388 Gene3D Tetratricopeptide repeat domain 387 501 IPR011990 GO:0005515
Cma16g01228 1388 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 634 1380 - -
Cma16g01228 1388 ProSitePatterns Protein kinases ATP-binding region signature. 654 677 IPR017441 GO:0005524
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g01228 - - - csv:101213683 1328.92
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g00589 Cma16g01228 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma15g00341 Cma-Chr15:1575235 Cma16g01228 Cma-Chr16:9292258 3.89E-168 dispersed
Cma16g01228 Cma-Chr16:9292258 Cma18g01102 Cma-Chr18:9013246 2.92E-57 dispersed
Cma03g00470 Cma-Chr3:4760968 Cma16g01228 Cma-Chr16:9292258 1.79E-08 transposed
Cma06g00589 Cma-Chr6:2831850 Cma16g01228 Cma-Chr16:9292258 0 transposed
Cma16g01228 Cma-Chr16:9292258 Cma06g00588 Cma-Chr6:2820082 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g230 . . . . . . . . Cmo06g00592 Cmo16g01271 . . . . . Cpe14g01014 . . . . . . . . . . . . . . . Cone8ag0549 Cone12ag0550 . . Lsi07g01113 . . Cme06g02394 . . . . . . . Bma12g00255 . . . Cma06g00589 Cma16g01228 Car06g00521 Car16g01156 Cpe08g00913 . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma01g01216 CST 1 691 MAP Kinase Kinase Kinase Kinase AT1G53165 61.2 4.1e-217 751.9
Cma09g00851 CST 1 692 MAP Kinase Kinase Kinase Kinase AT1G53165 60.4 1.7e-215 746.5
Cma18g01102 . 268 533 MAP Kinase Kinase Kinase Kinase AT1G53165 51.7 1.2e-67 255.4
Cma01g01216 CST 1 690 MAP Kinase Kinase Kinase Kinase AT3G15220 63.9 5.1e-228 788.1
Cma09g00851 CST 1 691 MAP Kinase Kinase Kinase Kinase AT3G15220 62.7 3.1e-225 778.9
Cma18g01102 . 268 533 MAP Kinase Kinase Kinase Kinase AT3G15220 50.9 1.6e-67 255.0
Cma18g01102 . 4 843 MAP Kinase Kinase Kinase Kinase AT1G69220 58.8 4.7e-241 831.6
Cma01g01216 CST 23 268 MAP Kinase Kinase Kinase Kinase AT1G69220 52.2 8.2e-68 256.1
Cma09g00851 CST 23 268 MAP Kinase Kinase Kinase Kinase AT1G69220 52.2 9.1e-67 252.7
Cma04g02707 CST 29 692 MAP Kinase Kinase Kinase Kinase AT5G14720 65.1 1.5e-248 856.3
Cma15g00341 CST 1 699 MAP Kinase Kinase Kinase Kinase AT5G14720 63.9 4.3e-248 854.7
Cma06g00589 CST 7 720 MAP Kinase Kinase Kinase Kinase AT4G24100 64.9 1.8e-244 842.8
Cma16g01228 CST 637 1378 MAP Kinase Kinase Kinase Kinase AT4G24100 61.4 1.2e-240 830.1
Cma16g01228 CST 641 1379 MAP Kinase Kinase Kinase Kinase AT4G10730 61.9 1.6e-242 836.3
Cma06g00589 CST 11 721 MAP Kinase Kinase Kinase Kinase AT4G10730 64.2 3.1e-241 832.0
Cma01g00193 . 4 492 MAP Kinase Kinase Kinase Kinase AT1G70430 51.0 1.9e-133 473.8
Cma16g01228 CST 635 983 MAP Kinase Kinase Kinase Kinase AT1G70430 58.5 5.4e-117 419.1
Cma06g00589 CST 5 364 MAP Kinase Kinase Kinase Kinase AT1G70430 57.5 3.5e-116 416.4
Cma01g00193 . 1 677 MAP Kinase Kinase Kinase Kinase AT1G79640 59.4 1.8e-217 753.1
Cma15g00341 CST 1 327 MAP Kinase Kinase Kinase Kinase AT1G23700 59.4 1.2e-103 374.4
Cma04g02707 CST 25 352 MAP Kinase Kinase Kinase Kinase AT1G23700 59.5 1.2e-101 367.9
Cma01g00193 . 6 324 MAP Kinase Kinase Kinase Kinase AT1G23700 52.5 7.3e-88 322.0
Cma06g00589 CST 17 306 MAP Kinase Kinase Kinase Kinase AT1G23700 50.9 1.0e-73 275.0
Cma14g01789 . 401 877 MAP Kinase Kinase Kinase Kinase AT4G14480 57.0 4.2e-144 508.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005064 3 0 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 2 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69211 PF00069 Pkinase 5.60E-60 CL0016 Cma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g01228 Cma_Chr16 FPKM 26.864708 31.057167 27.01992 29.083916 22.178854 19.863293 20.536461 34.282078 30.461872 30.289482