Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g01232 ATGGATGATTTTTCTATTTCTTCTTCTTCTTCACCAAATTCATCTGCTCATACCATTCAGCAGAGGCTTCAATTCATCCTCCATAATCTCCCTCAATGGTTTGCTTATTCAATCTTTTGGTTGGCTTCTAAAGATTCCGCTAGCAATCTTATTTTCTCTTGGAGTGATGGCTATTTCCGTGGCACTAGGAGTGGCGGTGGCGGCGGCAGCCAACTCATTAGTTTCGGGTTCGATGAAGTTGCGGTGGATCGAGCGGAAGCTGGAGATTTCTCCGACTTGGAAGGGTACTATACGGTATCTATTTCCCAGATGTATGGTGGGGTGGATAATGTGGTCGGTCAAGTATTCGACTCGAGCGCGTACATTTGGTTGACGATAGACGAGAGTCTACATTTGTACGAATGCGATCGAGTTAAAGAAGCGCGTTTACGAGGGATTCAGACGTTGGTTTTCGTTTCGACATCTGATGGGGTTCTTGAATTGGGTTCTTCTGAGTTGATTAAAGAAGATTGGAGCTTAGCTCACTTTGCAAAATCACTTTTTGGAACTTTTTCAGCAAGTTCTACACAATTTAAACAAAAAGATCATGTGGGTGTTGGTGGTGGAGGGATAATTCAACTACAAGCCCCACCGTGCTCCGGTATAGTCAAGAGAGAGATGAACGGTGGCCGTGGCGGAGGAGGGTCGTCCTCCGATTCCCTCTCTGATAACTCCGATGGGAATTTCTTATCAACGGTAGACAATAATAACGTTGGTAACAAGAAGGGGAAGAGACAGGCGAAGAATAAAGTAGAGTCCACAATGCCAGTAAACCATGTGGAAGCGGAAAGGCAACGACGGCAGAAGCTAAACCACAGATTCTACGCGCTCCGATCAGTGGTACCGAACGTATCAAAAATGGACAAAGCGTCGTTACTCGCCGACGCGATAGTATATATCAATGAGCTCAAGGCCAAGGTTCAAAAAATGGAGTCAAAGCTAAAACAATCACAACACCAAGCTAGTAGTAGCTTGAGCAATGCATTTGATCAAAAATGGAGCGGGATCTCAACGATCGAGCAGACGGTGAGCTCAACGAGCTATGCAATGAACAACGGTTACAACAATAATACCGTCGAGGTGCAGCTTGTGGGGGCAGAAGCTATAGTGAGAGTTCATTGTAGAGATGAAAATTATCCATCAGCAAGGCTTATGAATGTCCTTAAAGATTTGGGACTTCAAGTTCGTCAAGCAAGCTTGTCAAGTGTAAATGATCTAATGTTGCAAGATGTTGTTATCAGAGTTCCTCAAGGGGTAACCTTGAGAGAAAAGACCTTAAGAACTGCCATACTTCAAAGACTTGAATAA 1347 44.25 MDDFSISSSSSPNSSAHTIQQRLQFILHNLPQWFAYSIFWLASKDSASNLIFSWSDGYFRGTRSGGGGGSQLISFGFDEVAVDRAEAGDFSDLEGYYTVSISQMYGGVDNVVGQVFDSSAYIWLTIDESLHLYECDRVKEARLRGIQTLVFVSTSDGVLELGSSELIKEDWSLAHFAKSLFGTFSASSTQFKQKDHVGVGGGGIIQLQAPPCSGIVKREMNGGRGGGGSSSDSLSDNSDGNFLSTVDNNNVGNKKGKRQAKNKVESTMPVNHVEAERQRRQKLNHRFYALRSVVPNVSKMDKASLLADAIVYINELKAKVQKMESKLKQSQHQASSSLSNAFDQKWSGISTIEQTVSSTSYAMNNGYNNNTVEVQLVGAEAIVRVHCRDENYPSARLMNVLKDLGLQVRQASLSSVNDLMLQDVVIRVPQGVTLREKTLRTAILQRLE 448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 9341338 9343774 + CmaCh16G012320.1 Cma16g01232 311830

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g01232 448 SMART finulus 273 322 IPR011598 GO:0046983
Cma16g01232 448 Coils Coil 306 333 - -
Cma16g01232 448 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 267 316 IPR011598 GO:0046983
Cma16g01232 448 MobiDBLite consensus disorder prediction 226 255 - -
Cma16g01232 448 MobiDBLite consensus disorder prediction 218 279 - -
Cma16g01232 448 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 20 181 IPR025610 -
Cma16g01232 448 Gene3D - 270 345 IPR036638 GO:0046983
Cma16g01232 448 PANTHER MYC 12 447 IPR045084 GO:0003700|GO:0006355
Cma16g01232 448 CDD bHLH_AtAIB_like 269 341 - -
Cma16g01232 448 Pfam Helix-loop-helix DNA-binding domain 271 316 IPR011598 GO:0046983
Cma16g01232 448 PANTHER TRANSCRIPTION FACTOR MYC2-LIKE 12 447 - -
Cma16g01232 448 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 268 334 IPR036638 GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g01232 - - K13422 bhj:120069011 572.778
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g00583 Cma16g01232 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01614 Cma-Chr2:9172765 Cma16g01232 Cma-Chr16:9341338 1.10E-16 dispersed
Cma16g01232 Cma-Chr16:9341338 Cma17g00504 Cma-Chr17:3297860 7.18E-75 dispersed
Cma16g01232 Cma-Chr16:9341338 Cma06g00583 Cma-Chr6:2802550 2.29E-165 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g242 . . . . . Bpe07g00211 Bma07g01022 . Cmo06g00587 Cmo16g01278 . . . . . Cpe14g01018 . . . . . . . . Cla10g00083 Cam10g0080 Cec10g0083 Cco10g0087 Clacu10g0081 Cmu10g0928 Cre10g0343 . . . . Lsi07g01109 . . Cme06g02389 Blo03g00803 . . . Bpe08g00900 . . . . . . Cma06g00583 Cma16g01232 Car06g00517 Car16g01160 Cpe08g00916 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013416 0 0 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 1 1 0 27
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36609 PF14215 bHLH-MYC_N 4.10E-31 CL0161 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g01232 Cma_Chr16 FPKM 0.209756 0.290481 2.116014 1.688021 0.802911 1.116511 0.987404 6.122151 4.820636 5.682431