Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g01237 ATGGAAGGCCGCTTAACTTCCACTCTCACCGATCTTGCCGATGAGCCAACTTTGCAGCCCGATTTCATCCGCGACGAGGATGAGCGTTCCAAAGTTCCTTACAACCATTTCAGCAATGAAGTCCCGATCATCTCCATCGCCGGAATCGACGACGTTGAAGGCGGCGGCAGGGCCGAGATCTGCCGGAAGATCATTGACGCTTGCGAGGACTGGGGGATCTTCCAGATCGTCGACCATGGCGTCGATTCGGAAATTGTTTCCGATATGGCTCGTCTCGCTCGAGAGTTCTTTGCACTTCCGTCCGAGGAGAAACTCCGTTACGATATGTCTGGCGGTAAGAAGGGCGGATTCATCGTCTCCAGCCATCTCAAGGGAGAAGTTGTTAAAGATTGGCGTGAGATAGTGACCTACTTTTCGTACCCGATTAGAAACAGAGACTATTCGCTGTGGCCAGACAAGCCAGAGGGGTGGGCGGCGAAGACGGCGGAGTACAGCGAGAAGATGATGGGATTGGGGCGTAAGATGTTGGTGGTTTTATCAGAAGCCATGGGGCTGGAGAAGGAGGCCATAGTAAAGGCCTGTGTGGACATGGACCAGAAGATTGTGGTGAATTTCTATCCCAAATGCCCTCAGCCGGACCTCACTTTGGGGCTGAAGCGCCACACTGACCCTGGAACCATAACGCTGCTGCTGCAGGACCAGGTCGGTGGGCTTCAGGCCACCAAGGACGGTGGCCGGACGTGGATCACTGTCCAGCCCGTCCAAGGCGCTTTCATCGTCAACTTGGGAGACCATAGCCATTATCTAAGCAATGGGAGGTTCAAGAATGCAGAGCACAGAGCAGTAGTGAACTCAAACTCAAGCAGGCTATCAATAGCGACATTTCAAAACCCTGCGCCGGAGGCTATTGTGTATCCACTGAAGATCAGAGAAGGGGAGAAGCCTATTCTTGAGAAGCCCATCACCTTCAGTGAGATGTACCAGACCAAGATGAACAGGGACATTGAGCTTGCAAAGCTTAAGAAGCAGGCCCAACAACAACAACAACAAGCCCAAAAGCTTGTTGGATAA 1071 52.57 MEGRLTSTLTDLADEPTLQPDFIRDEDERSKVPYNHFSNEVPIISIAGIDDVEGGGRAEICRKIIDACEDWGIFQIVDHGVDSEIVSDMARLAREFFALPSEEKLRYDMSGGKKGGFIVSSHLKGEVVKDWREIVTYFSYPIRNRDYSLWPDKPEGWAAKTAEYSEKMMGLGRKMLVVLSEAMGLEKEAIVKACVDMDQKIVVNFYPKCPQPDLTLGLKRHTDPGTITLLLQDQVGGLQATKDGGRTWITVQPVQGAFIVNLGDHSHYLSNGRFKNAEHRAVVNSNSSRLSIATFQNPAPEAIVYPLKIREGEKPILEKPITFSEMYQTKMNRDIELAKLKKQAQQQQQQAQKLVG 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 9362199 9365013 + CmaCh16G012370.1 Cma16g01237 311835

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g01237 356 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 194 298 IPR005123 -
Cma16g01237 356 Coils Coil 330 356 - -
Cma16g01237 356 SUPERFAMILY Clavaminate synthase-like 14 333 - -
Cma16g01237 356 PANTHER NARINGENIN,2-OXOGLUTARATE 3-DIOXYGENASE 11 347 - -
Cma16g01237 356 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 11 347 - -
Cma16g01237 356 Gene3D - 8 337 IPR027443 -
Cma16g01237 356 Pfam non-haem dioxygenase in morphine synthesis N-terminal 41 152 IPR026992 -
Cma16g01237 356 Pfam 2OG-Fe(II) oxygenase superfamily 199 297 IPR044861 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g01237 K00475 F3H; naringenin 3-dioxygenase [EC:1.14.11.9] - ming:122073763 566.614
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma15g01333 Cma16g01237 CCT
Cma15g01333 Cma16g01237 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g01237 Cma-Chr16:9362199 Cma16g00015 Cma-Chr16:87066 4.35E-60 dispersed
Cma16g01237 Cma-Chr16:9362199 Cma06g00579 Cma-Chr6:2787699 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g274 . . Bda06g01126 . . . . . . Cmo16g01283 . Cma15g01333 . Car15g01198 . . . . . . . . . . . . . . . . . . . . . Lsi07g01105 . . . Blo03g00789 . . . . Bpe11g00380 . . . . Cmo15g01395 . Cma16g01237 . . . . . . . . . . . . . . . . . . . . . .
Vvi4g1112 Blo04g00885 Blo16g00079 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma03g00961 . . . . Cma16g01237 . . . . . . . . . . . . . . . . . . . Lsi07g01105 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002095 5 1 3 3 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 1 1 3 3 1 3 5 1 2 64
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g01237 Cma_Chr16 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0