Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g01241 ATGGGAGAGGAGGGAAGATCCTTGGCCGTGACTCCGACATGGTCGTTTGCAACAGTGGTAACTATCATGGTTTCGCTTGGATTCTTCTTCCAAGGCACGTTGAGACGGATTAAAAAGTGGTTGGATAGGACGAAGAGGAAATCGTTGCTTGCTGCGTTGGAGAAGATTAAAGAAGAATTGATGCTCTTTGGACTTCTGTCGTTGTTGATGGGTCATTGGATTGTTTTTGTGGCAAGAATTTGTGTTAAGTCATCTGTGTTGAGCAGCCGTTTCTATCCATGTGCGTTGGATATTGATCTGAAACGAGTTAGACATGTTTCTATTGCAAGTGAAAATATGAACAGTTCTAATGCTGGGATACGAGAGTATTGCCCTGAGGGGCGTGAATCGTTCGCTTCATATGAAAGTTTAGAGCAGCTTCATCGATTAATATTTGTTCTTGGTATCACTCATGTTTCGTATAGCTTCATTGCCATTGCCCTGGCTATGATTAAGATATATGGCTGGAGAGCGTGGGAAAACGAAGCTAAGGCTTTGGCCATTGGGAATGCACAAGAAGAATCTGTACAAGCTTCGTCGACCAGGCCAAAAATAGGGCGACTGTCAACTTTTGTCTTTCACCATACTTCTCACCCATGGAGTCGGAATAGAGTTCTCGTTTGGCTGCTCTGTTTCAGCCGCCAGTTTTGGAGCTCTATCAATCGAGCTGATTACATGGCTTTGCGGTTGGGCTTCATCAGTACTCATCAGCTCCCTATATCATATGACTTCCATAATTATATGCTTCGAAGCATGGAGGATGAATTTCGTGATATGGTTGGTATAAGTGTTCCACTCTGGATATATGCCATTGCTTGCATCTTCCTCAACTTCCATGGAAGCAATATTTACTTTTGGGTTTCCTTCCTCCCTGCAATTTTGATTCTGCTAATCGGGACGAAACTGCACCGGGTAGTCGTAAAGTTGGCTGTAGAAGTTGTGGATACGTCTGCTCGGGGATGTTATCGTTTTAACTTAAGGGATGAGCTGTTTTGGTTTGGGAAGCCTAAGCTTCTTTTGTGGTTGATACAATTTATATCCTTCCAGAATGCTTTTGAGATGGCTACATTTATTTGGTCCCTGTGGGAAATTAGGGAGCCCTCTTGTTTCATGGAGAACCAAACATACGTTGGTATCCGCTTGGCCTTTGGGGTCATCACTCAGTTTTGCAGTAGCTTCATTACATTCCCACTCTATGTTATAGTAACTCAGATGGGGTCGAGGTTCAAGAAATCACTTGTGTCGGAGAACGTCCGAAACTCGCTTCAACAATGGAAAAAAAGAGTGAAGACAAGGTCGGGTTCTACTTCCTTGGTTGCAGTTGTGGGTGCAACATCGCATTCATCCTCTGTTTGTACAATGGACGACGATGACGACGACGACGATGATGACGACGATGATGGTGAGGTGAATGACGACTTTATCGCAAACTGCTCGGAAGGAAGCACGTCAAACGCTGCCCAATCCACACGTTCCTCTCAGGTCCTTCAGTATGCTTCGTCGGATGACACGGACATACGAATATCTGTTCGTTCTAGTCCTCCGAACGTTACATCCAACAACAACAGAGATGAAGAGAATGAGGATCATCGAGGGCATTCTTCAGTTCCAGACCTTCCGGCTTACGCTGCAAGAAACCTCAGCCTTCTGCCTTCTCTGCGATTCTCTCTTACTCCTTCGATTTCTCGGTGTTTTCAGTCTCTCAACATGGTGCTCGAGGCGACGATGATCTGCATCGATAATTCGGAATGGATGAGGAACGGCGATTATGCTCCTTCGAGATTCCAAGCTCAAGCGGATGCCGTCAATCTCATTTGCGGAGCTAAAACCCAGTCCAATCCGGAGAATACGGTAGGAGTTCTTACGATGGCCGGAAAAGGGGTTCGGGTTTTGGTTACTCCTACCAGTGATCTTGGCAAGATTCTAGCGTGCATGCATGGTTTAGAGTTGGGTGGAGAGACAAACTTGGCTGCAGGGATTCAGGTGGCACAGTTGGCTCTGAAGCATCGTCAAAATAAGAAACAGCAACAAAGAATTATTGTTTTTGCGGGAAGTCCTGCCAATCATGACAAAAAGTTGTTGGAGACAATAGGAAAGAAATTAAAGAAGAATAATGTGGCACTTGATATTATTGATTTTGGTGAAGAAGATGATGGTAAGCCAGAGAAGCTGGAAGCCCTTCTTTCGGCTGTAAATAGTAATGACTCCAGTCACATTGTTCATGTTCCCTCCGGTCCAAATGCACTATCCGATGTACTTATTAGTACTCCAATCTTCACCGGTGATGGGGAGGGAGGAAGTGGATTTGCAGCAGCTGCTGCTGCAGCTTCAGCTGGTGGGGCTGGTTTTGATTTTGGTGTGGATCCCAATCTAGACCCTGAACTGGCACTTGCATTACGAGTCTCAATGGAAGAGGAAAGGGCCAGACAGGAGACAGCTGCTAAGAAAGCTGCTGAGGAGACTTCAAAGCAGGAAAAAGGAGAGGCACAACCATCTGGCTCACAGGATACAACTATGAACGAACGTGCTAGTGCTGAAACTTCTGATGCTCAAAAGACAAGTGATCCAATGGACGATGATAATGCTCTGCTACAACAAGCTCTTGCAATGTCAATGGAAGATCCTGCCTCAAGTCATGACGTGCGGGATACAGAAATGTCAGATGCAGCTATAGATCCAGAGTTAGCTCTTGCACTTCAGTTGTCCGTGCAGGAGGATGCTAAAGACTCAACAAGCCAACCTGATATGAGTAAATTACTGGCAGACCAGTCATTCGTGTCGTCCATTCTTGCATCGCTTCCAGGGGTTGATCCAAATGATCCATCAGTTAAAGATTTACTGGCTTCCATGCAAAGTCAGTCAAAGCCAGAGGACAAGAAGAATGAAGAAAACCCGCCCAAGGAAGACGACAACAACAAATGA 2961 45.42 MGEEGRSLAVTPTWSFATVVTIMVSLGFFFQGTLRRIKKWLDRTKRKSLLAALEKIKEELMLFGLLSLLMGHWIVFVARICVKSSVLSSRFYPCALDIDLKRVRHVSIASENMNSSNAGIREYCPEGRESFASYESLEQLHRLIFVLGITHVSYSFIAIALAMIKIYGWRAWENEAKALAIGNAQEESVQASSTRPKIGRLSTFVFHHTSHPWSRNRVLVWLLCFSRQFWSSINRADYMALRLGFISTHQLPISYDFHNYMLRSMEDEFRDMVGISVPLWIYAIACIFLNFHGSNIYFWVSFLPAILILLIGTKLHRVVVKLAVEVVDTSARGCYRFNLRDELFWFGKPKLLLWLIQFISFQNAFEMATFIWSLWEIREPSCFMENQTYVGIRLAFGVITQFCSSFITFPLYVIVTQMGSRFKKSLVSENVRNSLQQWKKRVKTRSGSTSLVAVVGATSHSSSVCTMDDDDDDDDDDDDDGEVNDDFIANCSEGSTSNAAQSTRSSQVLQYASSDDTDIRISVRSSPPNVTSNNNRDEENEDHRGHSSVPDLPAYAARNLSLLPSLRFSLTPSISRCFQSLNMVLEATMICIDNSEWMRNGDYAPSRFQAQADAVNLICGAKTQSNPENTVGVLTMAGKGVRVLVTPTSDLGKILACMHGLELGGETNLAAGIQVAQLALKHRQNKKQQQRIIVFAGSPANHDKKLLETIGKKLKKNNVALDIIDFGEEDDGKPEKLEALLSAVNSNDSSHIVHVPSGPNALSDVLISTPIFTGDGEGGSGFAAAAAAASAGGAGFDFGVDPNLDPELALALRVSMEEERARQETAAKKAAEETSKQEKGEAQPSGSQDTTMNERASAETSDAQKTSDPMDDDNALLQQALAMSMEDPASSHDVRDTEMSDAAIDPELALALQLSVQEDAKDSTSQPDMSKLLADQSFVSSILASLPGVDPNDPSVKDLLASMQSQSKPEDKKNEENPPKEDDNNK 986
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 9376688 9388144 + CmaCh16G012410.1 Cma16g01241 311839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g01241 986 MobiDBLite consensus disorder prediction 467 486 - -
Cma16g01241 986 Coils Coil 813 833 - -
Cma16g01241 986 Pfam Mlo family 6 454 IPR004326 GO:0006952|GO:0016021
Cma16g01241 986 ProSiteProfiles VWFA domain profile. 587 771 IPR002035 -
Cma16g01241 986 MobiDBLite consensus disorder prediction 968 986 - -
Cma16g01241 986 CDD VWA_26S_proteasome_subunit 583 770 - -
Cma16g01241 986 MobiDBLite consensus disorder prediction 489 534 - -
Cma16g01241 986 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 872 891 IPR003903 -
Cma16g01241 986 Pfam von Willebrand factor type A domain 588 697 IPR002035 -
Cma16g01241 986 Pfam Ubiquitin interaction motif 872 887 IPR003903 -
Cma16g01241 986 Pfam Ubiquitin interaction motif 805 818 IPR003903 -
Cma16g01241 986 Pfam Ubiquitin interaction motif 905 918 IPR003903 -
Cma16g01241 986 PANTHER MLO-LIKE PROTEIN 3 510 - -
Cma16g01241 986 SMART VWA_4 584 757 IPR002035 -
Cma16g01241 986 MobiDBLite consensus disorder prediction 840 864 - -
Cma16g01241 986 MobiDBLite consensus disorder prediction 821 839 - -
Cma16g01241 986 MobiDBLite consensus disorder prediction 821 871 - -
Cma16g01241 986 SMART uim 872 891 IPR003903 -
Cma16g01241 986 SMART uim 803 822 IPR003903 -
Cma16g01241 986 SMART uim 905 922 IPR003903 -
Cma16g01241 986 Gene3D - 801 890 - -
Cma16g01241 986 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 803 822 IPR003903 -
Cma16g01241 986 SUPERFAMILY vWA-like 586 756 IPR036465 -
Cma16g01241 986 Gene3D von Willebrand factor, type A domain 585 768 IPR036465 -
Cma16g01241 986 MobiDBLite consensus disorder prediction 462 551 - -
Cma16g01241 986 PANTHER MLO-LIKE PROTEIN 1 3 510 IPR004326 GO:0006952|GO:0016021
Cma16g01241 986 MobiDBLite consensus disorder prediction 945 986 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00417 Cma-Chr7:1803391 Cma16g01241 Cma-Chr16:9376688 0 dispersed
Cma15g00316 Cma-Chr15:1463951 Cma16g01241 Cma-Chr16:9376688 4.54E-122 dispersed
Cma16g01241 Cma-Chr16:9376688 Cma01g01204 Cma-Chr1:8723068 8.14E-133 dispersed
Cma04g00535 Cma-Chr4:2720460 Cma16g01241 Cma-Chr16:9376688 2.30E-162 transposed
Cma16g01241 Cma-Chr16:9376688 Cma03g00677 Cma-Chr3:5608658 0 wgd
Cma16g01241 Cma-Chr16:9376688 Cma06g00118 Cma-Chr6:619785 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g01241 K08472 - csv:101217051 880.167