Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g01242 ATGGATTCACAGTACCCATATCGTAACTCTCTTTACCCTCAAGTGAATCATTCGAATCCCGATGCGCCTTCATCCTCCTTTGTGAATCCTAATCCATCGTCGAGTTCGAATCTTTACCCCACTCTCGATATGAAGGATTTGGTGGAGAATCTGTTTCCCGACGACGTGGATTACCGCCATCCTCCTTCGGCTCCTCCCCTTGCGGCGGAAGAGATTCTCATCAGAGTCCCAGGCGCCATTCTCAACTTGATTGATCAACAGTACAGTGTTGAGCTCGCTTGCGGCGATTTGACCATTGTCCTTATTCGCCAAGGGGAGAGTATTGTTACGGTGCTAGCGCGTGTTGCCGATGAGATTCAATGGCCATTGGCGAAGGATTTGGCTTCTGTGAAGCTCGATGATTCGCATTACTTCTTCTCTTTTCGGGCTCTTAAGGAACGTGGATCGGAGTCCGATTCGAGTGACGAGGAAGACCGGAAGAAGAATGGGTTGGATGATTATTTGAGTTACGGGTTGACGATTGTTTCGAAAGGCCAAGAGGGATTGTTGAAGAAACTGGATGTGATTTTGCAGAATTACAGTAGTTTTACAATGCAGAAGGTATCGGAGAGTGCCAAGAAAGTGGAGATTCTGGATGAATCTCTGGCCAAAGAGATGTCGCCGGCGGATTTGAAGACGGAGAAGAAGAAGAAAGAAGAAATGGAGGGGAAATGTGCGGCGTATTGGACAACATTGGCTCCTAATGTGGAAGATTACAATCGAACGGCTGCAAAGTTGATTGCAGCGGGATCAGGGCAATTGATTAAAGGGATTTTGTGGTGCGGTGATGTGACTGTAGAAAGGTTGAAACAGGGGAATGAGGTTATGCAGAAGAGGATGGGCCCCTGTTCTAACACAGAGATCAGCCCTGAAACCCTCGAGAGGATTAAAAGGGTCAAGAGGGTGACAAGGATGTCGGAGAAAGTAGCAACTGGAGTACTCTCTGGAGTTGTTAAAGTTTCTGGATTCCTTACAAGTTCAGTGGCTAATTCGAAAGTTGGCAAGAAGTTTTTTGGAATGCTTCCAGGAGAAATTGTAGTGGCTTCTCTTGATGGCTTTGGCAAAGTTTTTGATGCTGTTGAAGTTGCTGGAAAAAATGTCATGGCTACATCTTCCACTGTGACAACTGAACTTGTGACCACAAGGTACGGGGAGCAAGCTGCTAATGCAACCAATGAAGGCCTTGAGGCTGCTGGACACGCCTTTGGGACGGCATGGGCTGCTTTGAAGTTACGAAAAGCTCTGAATCCAAAAAGTGCTCTTAAGCCAACAGCTTTAGCAAAATCCGCTGTTAAAGCCGCAGCTGCAGAGGCGAAGGCTAAGAACTCCAAGTAA 1374 47.02 MDSQYPYRNSLYPQVNHSNPDAPSSSFVNPNPSSSSNLYPTLDMKDLVENLFPDDVDYRHPPSAPPLAAEEILIRVPGAILNLIDQQYSVELACGDLTIVLIRQGESIVTVLARVADEIQWPLAKDLASVKLDDSHYFFSFRALKERGSESDSSDEEDRKKNGLDDYLSYGLTIVSKGQEGLLKKLDVILQNYSSFTMQKVSESAKKVEILDESLAKEMSPADLKTEKKKKEEMEGKCAAYWTTLAPNVEDYNRTAAKLIAAGSGQLIKGILWCGDVTVERLKQGNEVMQKRMGPCSNTEISPETLERIKRVKRVTRMSEKVATGVLSGVVKVSGFLTSSVANSKVGKKFFGMLPGEIVVASLDGFGKVFDAVEVAGKNVMATSSTVTTELVTTRYGEQAANATNEGLEAAGHAFGTAWAALKLRKALNPKSALKPTALAKSAVKAAAAEAKAKNSK 457
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 9389659 9392716 + CmaCh16G012420.1 Cma16g01242 311840

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g01242 457 PANTHER SENESCENCE/DEHYDRATION-ASSOCIATED-LIKE PROTEIN 1 457 - -
Cma16g01242 457 MobiDBLite consensus disorder prediction 1 35 - -
Cma16g01242 457 Pfam Senescence domain 259 445 IPR009686 -
Cma16g01242 457 PANTHER SPARTIN 1 457 IPR045036 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g01242 K19366 SPG20; spartin - csv:101217525 707.983
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00252 Cma-Chr2:1127278 Cma16g01242 Cma-Chr16:9389659 1.14E-171 transposed
Cma10g00666 Cma-Chr10:3031364 Cma16g01242 Cma-Chr16:9389659 3.88E-57 transposed
Cma16g01242 Cma-Chr16:9389659 Cma06g00119 Cma-Chr6:623921 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1137 Blo04g00879 Blo16g00086 . . . Bpe13g00409 . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0857 Cone12ag0820 . . . . . . . . Bda11g01830 . . . . Bma06g00091 Sed02g0073 . . Cma16g01242 . . . . . Bhi10g01858 Tan05g1147 Cmetu11g2225 . Hepe08g0287 . . . . . . . . . Lsi07g01095 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002053 1 1 3 3 1 2 3 2 2 2 2 2 3 2 2 2 2 2 3 2 2 2 2 2 2 2 2 3 5 2 66
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g01242 Cma_Chr16 FPKM 15.422853 18.475094 10.973411 13.721268 13.708716 12.302224 13.436775 11.38589 11.735168 11.701877