Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g01243 ATGAGGAATAGAACCCACCACCTGCTTTGCCACTTTGTAGCTGATAGGTATGCCTCATGCCTTGAAAAAGTGGGAGATGACAATGGGAGCAGTATATTTAAAAACCTCCACCCATTTGCACACATTCTCTTCTTGATTTACAACAAAACCAGACCCTTTCTTCAAAAAAATGTATATTTCTGTAAAGTTTCAGTATTAATGGCAGAAGAGGATACCTCCTCTGAACCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCGTCGTCGTCGTCTTCTTCAGCTCTCACCTCTACAATGTCCACTCCATTGCGGAAGGTGTTCTGTAGAATTTCAGGCCTTGCAACTTCTCTGAGAAGAAACACAGCCCCTCACAGCAGAAGAATCTTTCACAGAGATGTTGAACAACAAGAGTTTCAATATGCAAGCTCTCATTGCCTTTCTTCTTATTACAGTGTCTTTGTTGCTCGCCTTGCCATAATGGTGATGCTAGCTATTTTGATTGGGATGCTGACAATACTCACATGGCACTTCACGAAGAGCTACACGGCACAGTCGCTCGACAGCTTAGCGTATGGTCTTCGTCATGAACTGCTGCAGCGCCCGATCTTACGGATGTGGAGTGTCTTGAATTCCACAGCTGAAATAACCACAGCTCAGGTTAAGCTTTCAGAATATGTAATGAGGAAGTACAGCAAGCCAGTGAATCAAGCAGAGCAAGTTGAGTTGTATGAAGCAATGAGAGACGTTACGTGGGCGATGTTTGCAAGTCGAAAAGCTCTTAATGCCATAACAATCAATTACAAGAATGGTTTTGTCCAAGCGTTCCATCGAGATCATAGAAGCAACAATACGTTTTATATTTACTCGGATCTTGCAAACTATTCCATCACTGCCACTCAATCATATAATATAAATCGACTTTCATCGGGTGAAGGGTGGTCGGAACCACCCATACATGGCAATGTTTCTGCAAAATGGTACCGGGAACCACTTGATCCGATCAGCGGTGAGAAGATGGGGAAAGCAAGGCAAATCCCACCAGAGGACTTGATTAACATTCCTGGCATTTCACAGGTAGCTGATGGTGTTGCCTCATGGCATGTTACTGTCAGCAAGTACATGGATACACCATTGCTTTCAGCAGCCCTGCCTGTTTCAGATGCTTCAAACGAAAGCATAGTTGCGGTGGTCGGTGTCACGACCGCACTTTCGAGTGTCGGTCAACTTATGAAGGAGCTTGTTGAGTTCCATAGTGGACATATTTATCTAACCTCTCAAGAGGGCTACTTGCTTGCTACTTCAGCCAATGCTCCCTTGTTAAGAAATACATCGACCGGTCGGAAGCTTATGATGGCTGTCGATTCCCAAGATGACGTGATTCGATTAGGAGCCGAATGGCTACACAAAACCTATGGAAACAACTTTCCTCCTGGTCATGAGGTCCATGAAGAGAACGTCAAGCTTGGTGGTCAGCAATATTACATCGACTCATTTTTTCTTAATCTAAAGAAGCTTCCCATTGTGGGGGTTGTTATCATTCCTAGGCAATACATAATGGGAAAGGTAGATGAAAGAGCTTACAAAACATTGGTTATACTCATTTCTGCCTCTTTGTGCATCTTAGTTGTTGGATGTCTATTCATTTTGATTCTGACAAAAGGAGTATCTAAGGAAATGAAACTAAGAGCTGAACTAATAAGCCATCTTGATGCAAGAAGAAGAGCAGAGGCATCTAGTAATTACAAGAGTCAATTTCTCGCGAATATGAGTCATGAGCTGAGGACACCGATGGCTGCGGTAATTGGACTGCTCGACATTCTAATGTGCGATGATTGTCTTAATAACGAACAGTTTTCGACAGTCACTCAGATTCGAAAATGCTCGACAGCTCTACTCCGACTTCTTAACAACATTCTAGATCTAAGCAAGGTTGAATCTGGAAAGCTAGTTTTGGAAGATGCAGAGTTTGATCTGGGACGAGAACTCGAAGGGCTTGTTGATATGTTTTCCGTGCAATGCATTGATCATAATGTGGAAACTGTATTGGATCTCTCTGATGATATGCCGAGATTAGTTCGAGGAGACTCCGGTCGGGTTGTTCAAATATTCACGAACTTGATTAGCAACTCTATCAAATTCACAACTACTGGTCACATCATTCTTCGAGGGTGGTGCGAGACGTCAAATACGCTCAAAGAAATGGGAAAGTCTTGTATGGATCAAAAGAAATCACGGTTTCCAAATCGGACGAAGATGAAACAACAGGGAGACCACGCGAAGAACGCGTTCAAGAAAGATAACAAAATGACCTTATGGTTTGAACTTGATGACACTGGCTGTGGGATCGATCCTAGCAAATGGGAGTCTGTTTTTGAAAGCTTTGAGCAAGCAGATCCCTCGACAACCCGAACGCACGGTGGCACTGGTCTTGGACTATGCATTGTACGTACCTTGGTTAACAAGATGGGTGGTGAAATCAAGGTTGTAAAGAAAAACGGCCCGGGAACTCTAATGCGACTTTATTTGGTTCTCAGCACACCTGTAGACTCCATAGATCATCAATGTCAATTTGATTTTGCAAAACATAATGCAGTGGTACTGCTCGCACTCCGTGGCAGCACGAGTCGATTAATCACATCGCAGTGGCTTTGTAAGATCGGACTGTTCACTTTAGAGGCTTCAGAATGGAATGAACTAACTCTAATCCTTCAAGAACTCTTTCAAGCCAGAAAGTTTGAAAACAAAAAGGGATTTAGTCCACAGGATTCCCTCGGTGAACCCTTACGAGCCGAGTTAACGAGAATTAAGGACATGAAAAGCCAAACGTTCATCGTCGTTGCCGATATCGGGATACTGGACTTGAGCACGGATATTTGGAAGGATCAACTTTACTTCCTTGACAAGTACTCTGGAAAAGTGAAGTTTGCGTGGATGTTAAACCACGATACGTCCAACGCCATGAAGACGGAGCTTCGGGGAAAAGGACACTTTATAGTGAACAATAAGCCGCTGTATAGAGCAAAAATGATTCATATTTTGGAAGCTGTTATGAAGGACAGAAGTCTTGAGATTCAGAGGAAAAATGGTTTAAGAAATGCATCAAAAGAAGGGGATTATCATGAATGCCTTGAAATTGATTCAACTCAGTTTGAAACTGCTAGCTCTGATGATTCTGATTTAGCTGAACTTGACAAGTCCAAGTCTCAGTGTGCAACATTTCAAGAAGAAACAATGCCAAAACCTTGTCAGCCGCCATTTTTGTCCCTTAACGATAGCTTAGTTGAGTTAACTCGTGTACGTTCGACTGCGAGTAACGCAAGGACCGGTGGTTCATGTGACATGAGACAAGACTCATCCAATGGACTGAACTTTGGAGGAAACTATCCCAAAAGCCAAGAAGAATCAGATTCTAATAATGTTCATGGTAAGAAATCTCTTGAAGGGCTACGCATTTTGCTTGCAGAAGATACACCGGTTCTTCAAAGAGTAACGACGATAATGCTCGAAAGAATGGGAGCCACGGTGATCCCTGTCGGAGATGGGCTGCTGGCTGTTGAAGCTCTGACTGCAATGCTTAGTGCTGAAGAGCAAAGAAGAGAATGCCCCACAAGATATGATTTGGTCTTGATGGATTGCCAAATGCCAAAGATGGACGGCTACGAAGCAACAAAAGCGATTAGAAAGCTAGAATTGGGAACAAGCCTTCACATACCGATCGTAGCATTGACAGCTCACGCAATGTCGTCGGATGAAGCCAAATGCTTGGAGAAAAGTCTAAGAAACGTTGCTTACGATTCTCGAGCTACACTACGTGCTAATATTTTCGGTTTTGCAAATCAAAATGGTCACTTTTTAACCGAACAAAAAGGAGACGAGAAGGCATTTAAGGGTCGGAACGGGGCATATATTCAAGAGACGGGTTTAATGCTGAAGAGTGTAAATTTGCTGCCATAA 3951 43.05 MRNRTHHLLCHFVADRYASCLEKVGDDNGSSIFKNLHPFAHILFLIYNKTRPFLQKNVYFCKVSVLMAEEDTSSEPSSSSSSSSSSSSSSSSALTSTMSTPLRKVFCRISGLATSLRRNTAPHSRRIFHRDVEQQEFQYASSHCLSSYYSVFVARLAIMVMLAILIGMLTILTWHFTKSYTAQSLDSLAYGLRHELLQRPILRMWSVLNSTAEITTAQVKLSEYVMRKYSKPVNQAEQVELYEAMRDVTWAMFASRKALNAITINYKNGFVQAFHRDHRSNNTFYIYSDLANYSITATQSYNINRLSSGEGWSEPPIHGNVSAKWYREPLDPISGEKMGKARQIPPEDLINIPGISQVADGVASWHVTVSKYMDTPLLSAALPVSDASNESIVAVVGVTTALSSVGQLMKELVEFHSGHIYLTSQEGYLLATSANAPLLRNTSTGRKLMMAVDSQDDVIRLGAEWLHKTYGNNFPPGHEVHEENVKLGGQQYYIDSFFLNLKKLPIVGVVIIPRQYIMGKVDERAYKTLVILISASLCILVVGCLFILILTKGVSKEMKLRAELISHLDARRRAEASSNYKSQFLANMSHELRTPMAAVIGLLDILMCDDCLNNEQFSTVTQIRKCSTALLRLLNNILDLSKVESGKLVLEDAEFDLGRELEGLVDMFSVQCIDHNVETVLDLSDDMPRLVRGDSGRVVQIFTNLISNSIKFTTTGHIILRGWCETSNTLKEMGKSCMDQKKSRFPNRTKMKQQGDHAKNAFKKDNKMTLWFELDDTGCGIDPSKWESVFESFEQADPSTTRTHGGTGLGLCIVRTLVNKMGGEIKVVKKNGPGTLMRLYLVLSTPVDSIDHQCQFDFAKHNAVVLLALRGSTSRLITSQWLCKIGLFTLEASEWNELTLILQELFQARKFENKKGFSPQDSLGEPLRAELTRIKDMKSQTFIVVADIGILDLSTDIWKDQLYFLDKYSGKVKFAWMLNHDTSNAMKTELRGKGHFIVNNKPLYRAKMIHILEAVMKDRSLEIQRKNGLRNASKEGDYHECLEIDSTQFETASSDDSDLAELDKSKSQCATFQEETMPKPCQPPFLSLNDSLVELTRVRSTASNARTGGSCDMRQDSSNGLNFGGNYPKSQEESDSNNVHGKKSLEGLRILLAEDTPVLQRVTTIMLERMGATVIPVGDGLLAVEALTAMLSAEEQRRECPTRYDLVLMDCQMPKMDGYEATKAIRKLELGTSLHIPIVALTAHAMSSDEAKCLEKSLRNVAYDSRATLRANIFGFANQNGHFLTEQKGDEKAFKGRNGAYIQETGLMLKSVNLLP 1316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 9398969 9404815 + CmaCh16G012430.1 Cma16g01243 311841

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g01243 1316 CDD HisKA 581 642 IPR003661 GO:0000155|GO:0007165
Cma16g01243 1316 Pfam Response regulator receiver domain 1150 1256 IPR001789 GO:0000160
Cma16g01243 1316 Gene3D - 568 647 - -
Cma16g01243 1316 Gene3D - 648 846 IPR036890 -
Cma16g01243 1316 MobiDBLite consensus disorder prediction 72 96 - -
Cma16g01243 1316 Pfam His Kinase A (phospho-acceptor) domain 581 646 IPR003661 GO:0000155|GO:0007165
Cma16g01243 1316 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 635 841 IPR036890 -
Cma16g01243 1316 MobiDBLite consensus disorder prediction 1104 1139 - -
Cma16g01243 1316 ProSiteProfiles Response regulatory domain profile. 1149 1281 IPR001789 GO:0000160
Cma16g01243 1316 MobiDBLite consensus disorder prediction 1104 1134 - -
Cma16g01243 1316 SMART HisKA_10 580 646 IPR003661 GO:0000155|GO:0007165
Cma16g01243 1316 PANTHER TWO-COMPONENT HISTIDINE KINASE 98 1257 - -
Cma16g01243 1316 CDD REC_hyHK_CKI1_RcsC-like 1150 1255 - -
Cma16g01243 1316 ProSiteProfiles Histidine kinase domain profile. 587 845 IPR005467 -
Cma16g01243 1316 PANTHER OSMOSENSOR HISTIDINE KINASE 98 1257 - -
Cma16g01243 1316 SMART REC_2 1148 1273 IPR001789 GO:0000160
Cma16g01243 1316 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 693 843 IPR003594 -
Cma16g01243 1316 PRINTS Bacterial sensor protein C-terminal signature 805 823 IPR004358 GO:0016310|GO:0016772
Cma16g01243 1316 PRINTS Bacterial sensor protein C-terminal signature 788 798 IPR004358 GO:0016310|GO:0016772
Cma16g01243 1316 PRINTS Bacterial sensor protein C-terminal signature 770 784 IPR004358 GO:0016310|GO:0016772
Cma16g01243 1316 MobiDBLite consensus disorder prediction 738 757 - -
Cma16g01243 1316 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 568 647 IPR036097 GO:0000155|GO:0007165
Cma16g01243 1316 Gene3D - 1126 1261 - -
Cma16g01243 1316 SUPERFAMILY CheY-like 1146 1256 IPR011006 -
Cma16g01243 1316 SMART HKATPase_4 693 845 IPR003594 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g01243 - - - cmo:103490686 2155.56
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g01027 Cma-Chr12:8166633 Cma16g01243 Cma-Chr16:9398969 7.51E-09 dispersed
Cma16g01243 Cma-Chr16:9398969 Cma04g00016 Cma-Chr4:74939 3.73E-07 dispersed
Cma16g01243 Cma-Chr16:9398969 Cma06g00120 Cma-Chr6:631204 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1138 Blo04g00878 Blo16g00087 . . Bpe15g00478 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0858 Cone12ag0821 . . . . . . . . . . . . Bma03g00954 . . . . Cma16g01243 . . . . . . . . . . . . . . . . . . . Lsi07g01094 . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma06g00120 . 5 1218 Histidine Kinase Gene Family AT2G17820 63.3 0.0e+00 1425.2
Cma16g01243 . 102 1255 Histidine Kinase Gene Family AT2G17820 64.9 0.0e+00 1414.8
Cma04g00016 . 28 1012 Histidine Kinase Gene Family AT2G01830 70.5 0.0e+00 1325.8
Cma15g00887 CST 20 979 Histidine Kinase Gene Family AT2G01830 72.0 0.0e+00 1303.5
Cma04g02142 CST 23 992 Histidine Kinase Gene Family AT2G01830 69.8 0.0e+00 1276.9
Cma17g01443 . 102 1060 Histidine Kinase Gene Family AT2G01830 52.7 7.7e-276 947.6
Cma11g01285 . 280 1223 Histidine Kinase Gene Family AT2G01830 53.8 1.9e-274 943.0
Cma20g00673 . 302 1245 Histidine Kinase Gene Family AT2G01830 52.9 7.7e-268 921.0
Cma08g00179 . 51 983 Histidine Kinase Gene Family AT2G01830 52.5 3.8e-267 918.7
Cma02g00221 . 329 1267 Histidine Kinase Gene Family AT2G01830 50.7 7.8e-260 894.4
Cma01g01683 CCT 1 992 Histidine Kinase Gene Family AT5G10720 57.2 4.8e-290 994.6
Cma09g00387 CCT 1 996 Histidine Kinase Gene Family AT5G10720 56.2 2.0e-288 989.2
Cma05g00948 . 1 1120 Histidine Kinase Gene Family AT1G09570 79.4 0.0e+00 1817.7
Cma12g00705 . 1 1114 Histidine Kinase Gene Family AT1G09570 71.0 0.0e+00 1617.8
Cma19g00854 . 18 1087 Histidine Kinase Gene Family AT1G09570 53.8 0.0e+00 1171.0
Cma14g01590 CST 35 1078 Histidine Kinase Gene Family AT1G09570 53.6 0.0e+00 1155.2
Cma06g01564 CST 29 1123 Histidine Kinase Gene Family AT1G09570 52.5 0.0e+00 1155.2
Cma14g01590 CST 13 1041 Histidine Kinase Gene Family AT2G18790 77.1 0.0e+00 1620.1
Cma06g01564 CST 28 1064 Histidine Kinase Gene Family AT2G18790 77.2 0.0e+00 1610.9
Cma13g00567 CST 3 1047 Histidine Kinase Gene Family AT2G18790 59.2 0.0e+00 1227.6
Cma18g00452 CST 31 1051 Histidine Kinase Gene Family AT2G18790 59.3 0.0e+00 1224.5
Cma05g00948 . 21 1054 Histidine Kinase Gene Family AT2G18790 53.4 0.0e+00 1087.0
Cma19g00854 . 26 1068 Histidine Kinase Gene Family AT2G18790 51.9 1.4e-313 1073.2
Cma12g00705 . 18 1048 Histidine Kinase Gene Family AT2G18790 50.8 6.5e-305 1044.3
Cma19g00854 . 12 1087 Histidine Kinase Gene Family AT5G35840 61.2 0.0e+00 1334.7
Cma06g01564 CST 29 1125 Histidine Kinase Gene Family AT5G35840 51.7 0.0e+00 1120.1
Cma05g00948 . 9 1114 Histidine Kinase Gene Family AT5G35840 51.8 0.0e+00 1111.7
Cma14g01590 CST 21 1080 Histidine Kinase Gene Family AT5G35840 50.8 0.0e+00 1092.8
Cma12g00705 . 9 1105 Histidine Kinase Gene Family AT5G35840 50.6 0.0e+00 1080.9
Cma06g01564 CST 32 1125 Histidine Kinase Gene Family AT4G16250 74.3 0.0e+00 1649.0
Cma14g01590 CST 30 1080 Histidine Kinase Gene Family AT4G16250 74.2 0.0e+00 1616.3
Cma13g00567 CST 29 1109 Histidine Kinase Gene Family AT4G16250 57.6 0.0e+00 1261.9
Cma18g00452 CST 38 1113 Histidine Kinase Gene Family AT4G16250 57.6 0.0e+00 1257.7
Cma05g00948 . 8 1115 Histidine Kinase Gene Family AT4G16250 53.1 0.0e+00 1137.1
Cma12g00705 . 11 1109 Histidine Kinase Gene Family AT4G16250 50.5 0.0e+00 1082.8
Cma19g00854 . 26 1087 Histidine Kinase Gene Family AT4G16250 51.5 1.9e-312 1069.3
Cma13g00567 CST 12 1110 Histidine Kinase Gene Family AT4G18130 62.9 0.0e+00 1367.8
Cma18g00452 CST 15 1130 Histidine Kinase Gene Family AT4G18130 61.5 0.0e+00 1356.3
Cma06g01564 CST 40 1123 Histidine Kinase Gene Family AT4G18130 57.2 0.0e+00 1244.6
Cma14g01590 CST 38 1078 Histidine Kinase Gene Family AT4G18130 57.3 0.0e+00 1215.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005785 2 0 2 1 2 1 2 1 1 1 1 1 2 1 0 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36611 PF02518 HATPase_c 8.10E-23 CL0025 Cma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g01243 Cma_Chr16 FPKM 26.011263 29.404284 23.303692 25.166815 4.365169 4.6586 3.740453 37.060036 32.325996 32.159538