Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g01243 ATGAGGAATAGAACCCACCACCTGCTTTGCCACTTTGTAGCTGATAGGTATGCCTCATGCCTTGAAAAAGTGGGAGATGACAATGGGAGCAGTATATTTAAAAACCTCCACCCATTTGCACACATTCTCTTCTTGATTTACAACAAAACCAGACCCTTTCTTCAAAAAAATGTATATTTCTGTAAAGTTTCAGTATTAATGGCAGAAGAGGATACCTCCTCTGAACCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCGTCGTCGTCGTCTTCTTCAGCTCTCACCTCTACAATGTCCACTCCATTGCGGAAGGTGTTCTGTAGAATTTCAGGCCTTGCAACTTCTCTGAGAAGAAACACAGCCCCTCACAGCAGAAGAATCTTTCACAGAGATGTTGAACAACAAGAGTTTCAATATGCAAGCTCTCATTGCCTTTCTTCTTATTACAGTGTCTTTGTTGCTCGCCTTGCCATAATGGTGATGCTAGCTATTTTGATTGGGATGCTGACAATACTCACATGGCACTTCACGAAGAGCTACACGGCACAGTCGCTCGACAGCTTAGCGTATGGTCTTCGTCATGAACTGCTGCAGCGCCCGATCTTACGGATGTGGAGTGTCTTGAATTCCACAGCTGAAATAACCACAGCTCAGGTTAAGCTTTCAGAATATGTAATGAGGAAGTACAGCAAGCCAGTGAATCAAGCAGAGCAAGTTGAGTTGTATGAAGCAATGAGAGACGTTACGTGGGCGATGTTTGCAAGTCGAAAAGCTCTTAATGCCATAACAATCAATTACAAGAATGGTTTTGTCCAAGCGTTCCATCGAGATCATAGAAGCAACAATACGTTTTATATTTACTCGGATCTTGCAAACTATTCCATCACTGCCACTCAATCATATAATATAAATCGACTTTCATCGGGTGAAGGGTGGTCGGAACCACCCATACATGGCAATGTTTCTGCAAAATGGTACCGGGAACCACTTGATCCGATCAGCGGTGAGAAGATGGGGAAAGCAAGGCAAATCCCACCAGAGGACTTGATTAACATTCCTGGCATTTCACAGGTAGCTGATGGTGTTGCCTCATGGCATGTTACTGTCAGCAAGTACATGGATACACCATTGCTTTCAGCAGCCCTGCCTGTTTCAGATGCTTCAAACGAAAGCATAGTTGCGGTGGTCGGTGTCACGACCGCACTTTCGAGTGTCGGTCAACTTATGAAGGAGCTTGTTGAGTTCCATAGTGGACATATTTATCTAACCTCTCAAGAGGGCTACTTGCTTGCTACTTCAGCCAATGCTCCCTTGTTAAGAAATACATCGACCGGTCGGAAGCTTATGATGGCTGTCGATTCCCAAGATGACGTGATTCGATTAGGAGCCGAATGGCTACACAAAACCTATGGAAACAACTTTCCTCCTGGTCATGAGGTCCATGAAGAGAACGTCAAGCTTGGTGGTCAGCAATATTACATCGACTCATTTTTTCTTAATCTAAAGAAGCTTCCCATTGTGGGGGTTGTTATCATTCCTAGGCAATACATAATGGGAAAGGTAGATGAAAGAGCTTACAAAACATTGGTTATACTCATTTCTGCCTCTTTGTGCATCTTAGTTGTTGGATGTCTATTCATTTTGATTCTGACAAAAGGAGTATCTAAGGAAATGAAACTAAGAGCTGAACTAATAAGCCATCTTGATGCAAGAAGAAGAGCAGAGGCATCTAGTAATTACAAGAGTCAATTTCTCGCGAATATGAGTCATGAGCTGAGGACACCGATGGCTGCGGTAATTGGACTGCTCGACATTCTAATGTGCGATGATTGTCTTAATAACGAACAGTTTTCGACAGTCACTCAGATTCGAAAATGCTCGACAGCTCTACTCCGACTTCTTAACAACATTCTAGATCTAAGCAAGGTTGAATCTGGAAAGCTAGTTTTGGAAGATGCAGAGTTTGATCTGGGACGAGAACTCGAAGGGCTTGTTGATATGTTTTCCGTGCAATGCATTGATCATAATGTGGAAACTGTATTGGATCTCTCTGATGATATGCCGAGATTAGTTCGAGGAGACTCCGGTCGGGTTGTTCAAATATTCACGAACTTGATTAGCAACTCTATCAAATTCACAACTACTGGTCACATCATTCTTCGAGGGTGGTGCGAGACGTCAAATACGCTCAAAGAAATGGGAAAGTCTTGTATGGATCAAAAGAAATCACGGTTTCCAAATCGGACGAAGATGAAACAACAGGGAGACCACGCGAAGAACGCGTTCAAGAAAGATAACAAAATGACCTTATGGTTTGAACTTGATGACACTGGCTGTGGGATCGATCCTAGCAAATGGGAGTCTGTTTTTGAAAGCTTTGAGCAAGCAGATCCCTCGACAACCCGAACGCACGGTGGCACTGGTCTTGGACTATGCATTGTACGTACCTTGGTTAACAAGATGGGTGGTGAAATCAAGGTTGTAAAGAAAAACGGCCCGGGAACTCTAATGCGACTTTATTTGGTTCTCAGCACACCTGTAGACTCCATAGATCATCAATGTCAATTTGATTTTGCAAAACATAATGCAGTGGTACTGCTCGCACTCCGTGGCAGCACGAGTCGATTAATCACATCGCAGTGGCTTTGTAAGATCGGACTGTTCACTTTAGAGGCTTCAGAATGGAATGAACTAACTCTAATCCTTCAAGAACTCTTTCAAGCCAGAAAGTTTGAAAACAAAAAGGGATTTAGTCCACAGGATTCCCTCGGTGAACCCTTACGAGCCGAGTTAACGAGAATTAAGGACATGAAAAGCCAAACGTTCATCGTCGTTGCCGATATCGGGATACTGGACTTGAGCACGGATATTTGGAAGGATCAACTTTACTTCCTTGACAAGTACTCTGGAAAAGTGAAGTTTGCGTGGATGTTAAACCACGATACGTCCAACGCCATGAAGACGGAGCTTCGGGGAAAAGGACACTTTATAGTGAACAATAAGCCGCTGTATAGAGCAAAAATGATTCATATTTTGGAAGCTGTTATGAAGGACAGAAGTCTTGAGATTCAGAGGAAAAATGGTTTAAGAAATGCATCAAAAGAAGGGGATTATCATGAATGCCTTGAAATTGATTCAACTCAGTTTGAAACTGCTAGCTCTGATGATTCTGATTTAGCTGAACTTGACAAGTCCAAGTCTCAGTGTGCAACATTTCAAGAAGAAACAATGCCAAAACCTTGTCAGCCGCCATTTTTGTCCCTTAACGATAGCTTAGTTGAGTTAACTCGTGTACGTTCGACTGCGAGTAACGCAAGGACCGGTGGTTCATGTGACATGAGACAAGACTCATCCAATGGACTGAACTTTGGAGGAAACTATCCCAAAAGCCAAGAAGAATCAGATTCTAATAATGTTCATGGTAAGAAATCTCTTGAAGGGCTACGCATTTTGCTTGCAGAAGATACACCGGTTCTTCAAAGAGTAACGACGATAATGCTCGAAAGAATGGGAGCCACGGTGATCCCTGTCGGAGATGGGCTGCTGGCTGTTGAAGCTCTGACTGCAATGCTTAGTGCTGAAGAGCAAAGAAGAGAATGCCCCACAAGATATGATTTGGTCTTGATGGATTGCCAAATGCCAAAGATGGACGGCTACGAAGCAACAAAAGCGATTAGAAAGCTAGAATTGGGAACAAGCCTTCACATACCGATCGTAGCATTGACAGCTCACGCAATGTCGTCGGATGAAGCCAAATGCTTGGAGAAAAGTCTAAGAAACGTTGCTTACGATTCTCGAGCTACACTACGTGCTAATATTTTCGGTTTTGCAAATCAAAATGGTCACTTTTTAACCGAACAAAAAGGAGACGAGAAGGCATTTAAGGGTCGGAACGGGGCATATATTCAAGAGACGGGTTTAATGCTGAAGAGTGTAAATTTGCTGCCATAA 3951 43.05 MRNRTHHLLCHFVADRYASCLEKVGDDNGSSIFKNLHPFAHILFLIYNKTRPFLQKNVYFCKVSVLMAEEDTSSEPSSSSSSSSSSSSSSSSALTSTMSTPLRKVFCRISGLATSLRRNTAPHSRRIFHRDVEQQEFQYASSHCLSSYYSVFVARLAIMVMLAILIGMLTILTWHFTKSYTAQSLDSLAYGLRHELLQRPILRMWSVLNSTAEITTAQVKLSEYVMRKYSKPVNQAEQVELYEAMRDVTWAMFASRKALNAITINYKNGFVQAFHRDHRSNNTFYIYSDLANYSITATQSYNINRLSSGEGWSEPPIHGNVSAKWYREPLDPISGEKMGKARQIPPEDLINIPGISQVADGVASWHVTVSKYMDTPLLSAALPVSDASNESIVAVVGVTTALSSVGQLMKELVEFHSGHIYLTSQEGYLLATSANAPLLRNTSTGRKLMMAVDSQDDVIRLGAEWLHKTYGNNFPPGHEVHEENVKLGGQQYYIDSFFLNLKKLPIVGVVIIPRQYIMGKVDERAYKTLVILISASLCILVVGCLFILILTKGVSKEMKLRAELISHLDARRRAEASSNYKSQFLANMSHELRTPMAAVIGLLDILMCDDCLNNEQFSTVTQIRKCSTALLRLLNNILDLSKVESGKLVLEDAEFDLGRELEGLVDMFSVQCIDHNVETVLDLSDDMPRLVRGDSGRVVQIFTNLISNSIKFTTTGHIILRGWCETSNTLKEMGKSCMDQKKSRFPNRTKMKQQGDHAKNAFKKDNKMTLWFELDDTGCGIDPSKWESVFESFEQADPSTTRTHGGTGLGLCIVRTLVNKMGGEIKVVKKNGPGTLMRLYLVLSTPVDSIDHQCQFDFAKHNAVVLLALRGSTSRLITSQWLCKIGLFTLEASEWNELTLILQELFQARKFENKKGFSPQDSLGEPLRAELTRIKDMKSQTFIVVADIGILDLSTDIWKDQLYFLDKYSGKVKFAWMLNHDTSNAMKTELRGKGHFIVNNKPLYRAKMIHILEAVMKDRSLEIQRKNGLRNASKEGDYHECLEIDSTQFETASSDDSDLAELDKSKSQCATFQEETMPKPCQPPFLSLNDSLVELTRVRSTASNARTGGSCDMRQDSSNGLNFGGNYPKSQEESDSNNVHGKKSLEGLRILLAEDTPVLQRVTTIMLERMGATVIPVGDGLLAVEALTAMLSAEEQRRECPTRYDLVLMDCQMPKMDGYEATKAIRKLELGTSLHIPIVALTAHAMSSDEAKCLEKSLRNVAYDSRATLRANIFGFANQNGHFLTEQKGDEKAFKGRNGAYIQETGLMLKSVNLLP 1316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 9398969 9404815 + CmaCh16G012430.1 Cma16g01243 311841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g01243 1316 CDD HisKA 581 642 IPR003661 GO:0000155|GO:0007165
Cma16g01243 1316 Pfam Response regulator receiver domain 1150 1256 IPR001789 GO:0000160
Cma16g01243 1316 Gene3D - 568 647 - -
Cma16g01243 1316 Gene3D - 648 846 IPR036890 -
Cma16g01243 1316 MobiDBLite consensus disorder prediction 72 96 - -
Cma16g01243 1316 Pfam His Kinase A (phospho-acceptor) domain 581 646 IPR003661 GO:0000155|GO:0007165
Cma16g01243 1316 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 635 841 IPR036890 -
Cma16g01243 1316 MobiDBLite consensus disorder prediction 1104 1139 - -
Cma16g01243 1316 ProSiteProfiles Response regulatory domain profile. 1149 1281 IPR001789 GO:0000160
Cma16g01243 1316 MobiDBLite consensus disorder prediction 1104 1134 - -
Cma16g01243 1316 SMART HisKA_10 580 646 IPR003661 GO:0000155|GO:0007165
Cma16g01243 1316 PANTHER TWO-COMPONENT HISTIDINE KINASE 98 1257 - -
Cma16g01243 1316 CDD REC_hyHK_CKI1_RcsC-like 1150 1255 - -
Cma16g01243 1316 ProSiteProfiles Histidine kinase domain profile. 587 845 IPR005467 -
Cma16g01243 1316 PANTHER OSMOSENSOR HISTIDINE KINASE 98 1257 - -
Cma16g01243 1316 SMART REC_2 1148 1273 IPR001789 GO:0000160
Cma16g01243 1316 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 693 843 IPR003594 -
Cma16g01243 1316 PRINTS Bacterial sensor protein C-terminal signature 805 823 IPR004358 GO:0016310|GO:0016772
Cma16g01243 1316 PRINTS Bacterial sensor protein C-terminal signature 788 798 IPR004358 GO:0016310|GO:0016772
Cma16g01243 1316 PRINTS Bacterial sensor protein C-terminal signature 770 784 IPR004358 GO:0016310|GO:0016772
Cma16g01243 1316 MobiDBLite consensus disorder prediction 738 757 - -
Cma16g01243 1316 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 568 647 IPR036097 GO:0000155|GO:0007165
Cma16g01243 1316 Gene3D - 1126 1261 - -
Cma16g01243 1316 SUPERFAMILY CheY-like 1146 1256 IPR011006 -
Cma16g01243 1316 SMART HKATPase_4 693 845 IPR003594 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g01027 Cma-Chr12:8166633 Cma16g01243 Cma-Chr16:9398969 7.51E-09 dispersed
Cma16g01243 Cma-Chr16:9398969 Cma04g00016 Cma-Chr4:74939 3.73E-07 dispersed
Cma16g01243 Cma-Chr16:9398969 Cma06g00120 Cma-Chr6:631204 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36611 PF02518 HATPase_c 8.10E-23 CL0025 Cma TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g01243 - - cmo:103490686 2155.56