Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g01245 ATGGCGGAAATCCAGAATTCGGAAGCGCCAAAAATTCTCACAATGAACCAAGGAATCGGCGACCAAAGCTACGCCACAAACTCAATCTCACAGAGTAAATACCAGTCCGGATCCCGGCCTCTGCTCCGCCGCGCCATTGCTGCCTTATGCGCAGCCGATTTGCCGCCCGCCATTGCCGTTGCCGACCTCGGCTGCTCTTCAGGACCGAACGCGCTCTTCGCGATCTCCGAGATCGTCGGCGTGATCCGCGGCTGTTGCGGCGGTGAAGCGCCGGAGTTGACTGTGTTTTTGAACGATCTGGCGGAGAACGATTTCAACTCTGTTTTCAGAGGATTGTCGAACAAGAAGAACGGCGGATCGTCGGCTATGGATGAGTGTTTTGTCGCTGGAGTTCCAGGATCTTTCTATGGAAGATTGTTTGCTTCTAACAGTCTTCATTTTGTGCATTCTTCTTCCAGTCTCCATTGGCTTTCTCAGGTACCTCAAGAGCTGAGTGAGAAAGGGAAGGGAATAAGGAACAAAGGGAAGATTTTCATATCAAAGACAAGCCCAAGTGAAGTAATAGAAGCATATTATGGTCAGTTCAAGAAGGATTTCAGTTGTTTTTTGAAGTCAAGATCAAAAGAAGTGGTGTGTGGAGGGAGAATGGTTTTAACTTTCAGAGGAAGAAGGCAGCCAGATCCATGCCCCGATGAAACTTGCCTTCTTTGGGATTACTTGGGGCTAGCCTTCCAAGCTTTGGTCCATGAGGGGCTTATTGAGGAGGAGAAAGTAGATAGCTACAACACTCCTTATTATGAACCGTATGTGGAGGATGTGAGAAGGGAGATAGAGGAAGAAGGGTCCTTCAAAATAGAGAATTTGGAGATAATTGCTTTGGCATGGGATGGTGTGAATAGAGATGGGGAAAGCTATGAACGATCAAAGACAACCCAACAAATGGCGAAGGCCATTCAAGCTGTGAATGAATGTATGATAAGAGCCCATTTTGGAGGAGATATTATAGAGTCATTGTTTAAGAGATTTGAAGAAATCATGGTGGCTGATACTAGAGAGGTGGAGCATGTTAGTTTGGTTCTTTCTTTGCTTAGAAAATAA 1098 46.36 MAEIQNSEAPKILTMNQGIGDQSYATNSISQSKYQSGSRPLLRRAIAALCAADLPPAIAVADLGCSSGPNALFAISEIVGVIRGCCGGEAPELTVFLNDLAENDFNSVFRGLSNKKNGGSSAMDECFVAGVPGSFYGRLFASNSLHFVHSSSSLHWLSQVPQELSEKGKGIRNKGKIFISKTSPSEVIEAYYGQFKKDFSCFLKSRSKEVVCGGRMVLTFRGRRQPDPCPDETCLLWDYLGLAFQALVHEGLIEEEKVDSYNTPYYEPYVEDVRREIEEEGSFKIENLEIIALAWDGVNRDGESYERSKTTQQMAKAIQAVNECMIRAHFGGDIIESLFKRFEEIMVADTREVEHVSLVLSLLRK 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 9410986 9413514 + CmaCh16G012450.1 Cma16g01245 311843

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g01245 365 Gene3D Vaccinia Virus protein VP39 27 294 IPR029063 -
Cma16g01245 365 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 11 365 IPR029063 -
Cma16g01245 365 Pfam SAM dependent carboxyl methyltransferase 46 363 IPR005299 GO:0008168
Cma16g01245 365 Gene3D - 13 350 IPR042086 -
Cma16g01245 365 PANTHER S-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN 11 363 IPR005299 GO:0008168
Cma16g01245 365 PANTHER JASMONATE O-METHYLTRANSFERASE-LIKE 11 363 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g01245 K08241 E2.1.1.141; jasmonate O-methyltransferase [EC:2.1.1.141] K21483 csv:101211109 554.673
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01923 Cma-Chr1:12515046 Cma16g01245 Cma-Chr16:9410986 1.10E-93 dispersed
Cma16g00627 Cma-Chr16:3233193 Cma16g01245 Cma-Chr16:9410986 5.00E-75 dispersed
Cma16g01245 Cma-Chr16:9410986 Cma07g00473 Cma-Chr7:2067016 8.07E-100 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1151 . . . . Bpe15g00481 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma16g01245 . . . . . . . . . . . . . . . . . . . Lsi07g01092 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013465 1 0 0 2 1 1 0 1 1 1 1 1 1 1 1 1 1 0 0 1 1 1 1 0 0 1 1 1 1 3 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g01245 Cma_Chr16 FPKM 7.448375 9.460895 0.0 0.0 0.326816 0.0 0.248345 0.0 0.156995 0.276212