Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g01246 ATGGATACCATCCCAAATTCTCTCTGTCTTTCTCCCGCCTCTGACCTCACTCTCAAATCCTCCGCCGTCCGCTGCTTTTTCCCGATCCGCAATCGCTATTCTGTCAATTTCCGTTCGTCTCCAACTCGGATTGAGTTGAATCGAAATGGATTTTCTGGTTTGAGTTTGAGGCCGATGAGAGGGAAGAGTTGGGCGAGATCTGCTCAGATTATGGATCAGTCAGCGAGTAAAACTGATTCCTCTGCTCCGACGATTGTTGAGGTGGATTTGGGTGACCGGAGCTATCCGATTTACATTGGATCCGGTCTTCTCGATCAGCCTGAGATTCTCCAGAGGCATGTTCATGGGAAGAGAGTGCTTATAGTCACGAATGATACTGTTGGACCATTGTATTTAGATAAAGTTGCTGAAGCTTTAACTGTTGGGAATCCTAATGTTTCAATTGAAAGTGTGATTTTACCAGATGGTGAGAAGTACAAGGATATGGACACACTCATGAAAGTATTTGACAAGGCTATCGAGTCGCGGCTTGATCGGCGATGTACATTTGTAGCCCTTGGAGGTGGTGTAATTGGCGATATGTGTGGTTATGCTGCTGCTTCTTTCCTCCGAGGGGTTAACTTCATTCAGATTCCCACGACTGTTATGGCACAAGTGGACTCTTCAGTTGGGGGAAAGACAGGGATAAATCACCGTCTGGGGAAGAACTTGATTGGTGCATTTTATCAACCTCAATGTGTCGTTGTAGATACCGACACATTAAACACACTACCTGAAAGGGAACTGGCTTCTGGTTTTGCGGAGGTCATCAAGTATGGACTTATTAGGGATGCCGAGTTTTTTGAATGGCAGGAGAAGAACATGCCTTCATTGATGGCAAGGTGCGCAATAGAAACTGGGTTCGGGTACGGCCAGTGGCTCCATGGAGAAGCTGTTGCAGTTGGCACGGTAATGGCAGTTGACATGTCATATCGTCTCGGATGGATTGATGATACAATTGTGAGCAGAGTTCTTGCCATTCTAAAACAGGCAAAGTTGCCTACTGCACCTCCCGACAGCATGACGGTGGAGATGTTTAAATCGATAATGGCAGTCGACAAGAAGGTTGCTGATGGGCTACTAAGGCTAATTCTCCTGAAAGGTCCTCTAGGAAACTGCGTTTTCACCGGCGATTATGACAGGAAGGCGTTGGACGAGACACTTCATTCATTTTGCAAAAGAGATCGTTCCGAGGTGTGCGTAAGTTCTGTACCATACGTTTATGATATTGCTCTGGCTCTCTGCTTCTTCCCTTTAGCCTTAAAATTGAACGTCTCGACTTCTTGGTCCAGAGTATATTTGAGAAAGTCGAGAGCTCCAATCAATAGGATTTTCTTAATCCTCCCTTCCCGAAAGCGAAAGGAAGAACGTTGCTCCAAACTGCTCAATCAAGAGAGAGAGAACCAAGGAAGGTTTGTTGGCGAAGATTGGTTTGGTGAAGGAACGCTTCATCGGCAATATTTCCCGGCGTCAAAGCTTTCTCTCTCATCCTTCTCTGCAACCATTCCCCCATTGATTCTCTATCAATTTCTTCCTTCGGTTTTCTCCAATTGCCCCTCTTCTCGTGTTTTCCCCCCACCTTTCACAACCGCCGGAGCACGGAGCAACTGGAGGAGATCAACCACGGCGTTTTTAGTTCACGATCTGAGGCCGGCCACCCCCTTTTTCTGGCTTCTCAACAATGAGCGCTTCAAGGTTCATCAAGTGCGTCACCGTTGGAGACGGAGCTGTTGGCAAGACTTGTCTCCTTATCTCCTATACCAGCAACACCTTCCCCACTGTCAGCCTCTCTCTCTCTCTCTCTCTTTTCTTCCATTTATGTTGCTGTTGGCTAGATTGTATGATGAGGATTATGTGCCTACAGTTTTTGACAATTTCAGTGCAAATGTGGTTGTAAATGGGAGCACTGTTAACCTAGGATTGTGGGATACTGCTGGACAGGAGGATTATAACCGGCTAAGACCTTTGAGTTATCGTGGGGCAGATGTTTTTATATTGGCATTCTCTCTCATTAGCAAGGCCAGTTATGAAAATGTTTCTAAAAAGTGGATCCCAGAGTTGAAGCATTATGCACCAGGAGTACCTATTGTTCTGGTTGGAACTAAGCTTGATCTTCGAGATGATAAGCAGTTCTTTATTGACCATCCTGGTGCAGTTCCTATTTCAACAGCTCAGGGAGAGGAGCTTCAAAAGCTGATTGGTGCTCCTGAATATATTGAATGCAGCTCAAAAACTCAGCAGCAATTAAGGTTGTACTTCAACCTCCAAAGCAGAAGAAAAAGAAGGCCAAAGGTCAGAGAGCGTGCTCGATATTATGAGCAAAGCTGTAGTTGTGGAAACATGACACCACCCTTTGTCTGCCTTGGCCTAAAAGTCCGATTTATTTTTCTGTCCCGGAATACACGCAATCTCTGTGAAGCATCGTCGGGTAGTTTGTTACCTCTGTCCCGGAATACACGCAAACTAGGAGACGACATGCTCCTCAGTCGTCACCTTATACTACTAGCCTTTGGTTCTAAATATGTACTGATAGAGATATGGATACTGGAATGTGAGGAGGATTATCAAAACCTTCCTCGCAAGCTTAATGCTTTTAAGATGACCAACGAAAAAACTCTATTTCAAGACAAATATGGATGGCATAGCTCATCAAAGACTAGTCAACTGCAAATGGAAAGGCAATCGAAACCGAAGCTTAGTTCAAAAATATGCACAAATGCCTTGACGGGTCGGACGAGCACGCCAAGTGTGTATCAGTCTCACATTACAGAATAG 2814 45.31 MDTIPNSLCLSPASDLTLKSSAVRCFFPIRNRYSVNFRSSPTRIELNRNGFSGLSLRPMRGKSWARSAQIMDQSASKTDSSAPTIVEVDLGDRSYPIYIGSGLLDQPEILQRHVHGKRVLIVTNDTVGPLYLDKVAEALTVGNPNVSIESVILPDGEKYKDMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASFLRGVNFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFYQPQCVVVDTDTLNTLPERELASGFAEVIKYGLIRDAEFFEWQEKNMPSLMARCAIETGFGYGQWLHGEAVAVGTVMAVDMSYRLGWIDDTIVSRVLAILKQAKLPTAPPDSMTVEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDETLHSFCKRDRSEVCVSSVPYVYDIALALCFFPLALKLNVSTSWSRVYLRKSRAPINRIFLILPSRKRKEERCSKLLNQERENQGRFVGEDWFGEGTLHRQYFPASKLSLSSFSATIPPLILYQFLPSVFSNCPSSRVFPPPFTTAGARSNWRRSTTAFLVHDLRPATPFFWLLNNERFKVHQVRHRWRRSCWQDLSPYLLYQQHLPHCQPLSLSLSFLPFMLLLARLYDEDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPISTAQGEELQKLIGAPEYIECSSKTQQQLRLYFNLQSRRKRRPKVRERARYYEQSCSCGNMTPPFVCLGLKVRFIFLSRNTRNLCEASSGSLLPLSRNTRKLGDDMLLSRHLILLAFGSKYVLIEIWILECEEDYQNLPRKLNAFKMTNEKTLFQDKYGWHSSSKTSQLQMERQSKPKLSSKICTNALTGRTSTPSVYQSHITE 937
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 9414446 9424673 + CmaCh16G012460.1 Cma16g01246 311844

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g01246 937 ProSiteProfiles small GTPase Ras family profile. 592 848 IPR001806 GO:0003924|GO:0005525
Cma16g01246 937 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 624 767 IPR027417 -
Cma16g01246 937 Gene3D - 619 783 IPR027417 -
Cma16g01246 937 Pfam Ras family 626 767 IPR001806 GO:0003924|GO:0005525
Cma16g01246 937 SMART rab_sub_5 622 775 - -
Cma16g01246 937 SMART rho_sub_3 629 776 IPR001806 GO:0003924|GO:0005525
Cma16g01246 937 CDD DHQS 94 401 - -
Cma16g01246 937 Hamap 3-dehydroquinate synthase [aroB]. 83 405 IPR016037 GO:0003856|GO:0005737|GO:0009073
Cma16g01246 937 Gene3D - 70 256 - -
Cma16g01246 937 Gene3D - 257 295 - -
Cma16g01246 937 SUPERFAMILY Dehydroquinate synthase-like 87 397 - -
Cma16g01246 937 SMART ras_sub_4 622 776 - -
Cma16g01246 937 Gene3D - 296 407 - -
Cma16g01246 937 ProSiteProfiles small GTPase Rab1 family profile. 587 832 - -
Cma16g01246 937 CDD Rop_like 630 779 - -
Cma16g01246 937 PANTHER 3-DEHYDROQUINATE SYNTHASE 82 294 - -
Cma16g01246 937 PANTHER 3-DEHYDROQUINATE SYNTHASE 296 406 - -
Cma16g01246 937 PRINTS Transforming protein P21 ras signature 643 665 - -
Cma16g01246 937 PRINTS Transforming protein P21 ras signature 751 773 - -
Cma16g01246 937 PRINTS Transforming protein P21 ras signature 626 642 - -
Cma16g01246 937 PRINTS Transforming protein P21 ras signature 705 718 - -
Cma16g01246 937 Pfam 3-dehydroquinate synthase 151 291 IPR030960 -
Cma16g01246 937 Pfam 3-dehydroquinate synthase 296 369 IPR030960 -
Cma16g01246 937 ProSiteProfiles small GTPase Rho family profile. 547 782 - -
Cma16g01246 937 TIGRFAM small_GTP: small GTP-binding protein domain 629 754 IPR005225 GO:0005525
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g01246 K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4] - csv:101218240 704.901
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g01246 Cma-Chr16:9414446 Cma06g00124 Cma-Chr6:645546 2.77E-85 dispersed
Cma06g00123 Cma-Chr6:643236 Cma16g01246 Cma-Chr16:9414446 7.26E-27 transposed
Cma16g01246 Cma-Chr16:9414446 Cma06g00121 Cma-Chr6:639843 1.96E-19 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1153 . . . . Bpe15g00482 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1695 Cone9ag1619 . . . . . . . Bda14g01069 . . . . . . . Cma16g01246 . . . . . . . . . . . . . . . . . . . Lsi07g01091 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009618 1 0 1 0 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g01246 Cma_Chr16 FPKM 30.542231 33.504807 28.058571 27.482082 31.911865 28.692486 30.387554 29.724434 31.027153 30.313305